protein

CDK5

Entity Detail — Knowledge Graph Node

Understanding Entity Pages

This page aggregates everything SciDEX knows about CDK5: its mechanistic relationships (Knowledge Graph edges), hypotheses targeting it, analyses mentioning it, and supporting scientific papers. The interactive graph below shows its immediate neighbors. All content is AI-synthesized from peer-reviewed literature.

766Connections
3Hypotheses
6Analyses
50Outgoing
50Incoming
0Experiments
7Debates

Summary

Cyclin-Dependent Kinase 5 (CDK5) is a unique member of the CDK family that lacks a role in cell cycle regulation and is not activated by cyclins. Instead, CDK5 is activated by neuron-specific partners p35 and p39, which are expressed primarily in post-mitotic neurons. CDK5 phosphorylates numerous substrates including tau, APP, presenilins, and NMDA receptors, making it a critical regulator of neuronal function. In Alzheimer's disease and other neurodegenerative conditions, dysregulation of CDK5 occurs due to calpain-mediated cleavage of p35 to p25, leading to hyperactivation of CDK5 and hyperphosphorylation of tau at multiple AD-relevant epitopes. CDK5-mediated tau phosphorylation contributes to neurofibrillary tangle formation and granulovacuolar degeneration, both hallmarks of AD pathology. CDK5 also plays roles in synaptic plasticity, learning and memory, and motor neuron survival. While CDK5 inhibitors have been explored therapeutically, their lack of specificity and neural toxicity have been significant obstacles.

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🔬 Protein Info
Gene SymbolCDK5
Protein FamilyCMGC kinase group, CDK family
Protein TypeSerine/Threonine Kinase
FunctionCdk5 knockout mice die at birth with severe cortical layering defects due to failed neuronal migration.
Primary ExpressionCytoplasm, nucleus, synapses, growth cones, perinuclear region
Amino Acids291 aa
PathwaysApoptosis, Autophagy, Checkpoint Inhibitor, Immune Checkpoint, Immune Response
GeneCardsCDK5
Human Protein AtlasCDK5
Associated DiseasesAging, Als, Alzheimer, Alzheimer's disease, Ataxia
Known Drugs/Compoundsmetformin, METFORMIN, N-ACETYLCYSTEINE, Protopanaxatriol, RESVERATROL
InteractionsABETA, ACHE, Actin, AD, AGING, AKT
SciDEX HypothesesCDK5 Inhibition at Presynaptic Terminals Prevents
KG Connections750 knowledge graph edges
DatabasesGeneCardsUniProtNCBI GeneHPASTRING

Wiki Pages (10)

Knowledge base pages for this entity

Canonical Page

Cdk5 (Cyclin-Dependent Kinase 5)

protein · 1722 words

CDK5 Protein

protein · 2216 words

CDK5R1 Gene

gene · 1903 words

Cyclin-Dependent Kinase 5 (CDK5)

mechanism · 1751 words

CDK5R1 (p35/p25, CDK5 Activator 1)

protein · 1245 words

CDK5 Inhibitors for Neurodegeneration

therapeutic · 1136 words

Pathway Diagram

graph TD
    CDK5["CDK5"] -.->|"inhibits"| BECN1["BECN1"]
    CDK5["CDK5"] -->|"interacts"| Ms["Ms"]
    CDK5["CDK5"] -->|"activates"| Als["Als"]
    CDK5["CDK5"] -->|"therapeutic target"| Alzheimer["Alzheimer"]
    CDK5["CDK5"] -.->|"inhibits"| Neurodegeneration["Neurodegeneration"]
    CDK5["CDK5"] -->|"activates"| Ms_1["Ms"]
    DCX["DCX"] -->|"interacts"| CDK5["CDK5"]
    PAFAH1B1["PAFAH1B1"] -->|"interacts"| CDK5["CDK5"]
    DAB1["DAB1"] -->|"interacts"| CDK5["CDK5"]
    LIS1["LIS1"] -->|"interacts"| CDK5["CDK5"]
    style CDK5 fill:#006494,stroke:#4fc3f7,stroke-width:2px,color:#e0e0e0

Outgoing (522)

TargetRelationTypeStr
benchmark_ot_ad_answer_key:CDK5data_indataset_row0.00
benchmark_ot_ad_answer_key:CDK5data_indataset_row0.00
ds-83b31ef18d49provides_data_fordataset1.00
Tau aggregationmediatesprocess0.90
NEURONAL MIGRATIONregulatesentity0.85

Incoming (244)

SourceRelationTypeStr
benchmark_ot_ad_answer_key:CDK5data_indataset_row0.00
benchmark_ot_ad_answer_key:CDK5data_indataset_row0.00
entities-overviewassociated_withwiki0.00
ds-83b31ef18d49data_indataset1.00
Protopanaxatriolinhibitscompound0.90

Targeting Hypotheses (3)

Hypotheses where this entity is a therapeutic target

HypothesisScoreDiseaseAnalysis
CDK5 Inhibition at Presynaptic Terminals Prevents Activity-D 0.640 neurodegeneration Investigate prion-like spreading of tau
Aβ42 oligomers drive TDP-43 phosphorylation at s409/410 thro 0.595 neurodegeneration What mechanisms drive TDP-43 pathology s
A post-trigger CDK5-dominant kinase feedback loop maintains 0.590 neurodegeneration Does tau dendritic missorting persist in

Mentioning Analyses (6)

Scientific analyses that reference this entity

Epigenetic reprogramming in aging neurons

neurodegeneration | 2026-04-04 | 9 hypotheses Top: 0.914

Investigate prion-like spreading of tau pathology through connected brain region

neurodegeneration | 2026-04-04 | 7 hypotheses Top: 0.640

Tau propagation mechanisms and therapeutic interception points

neurodegeneration | 2026-04-04 | 15 hypotheses Top: 0.814

Gene expression changes in aging mouse brain predicting neurodegenerative vulner

neurodegeneration | 2026-04-03 | 44 hypotheses Top: 0.990

Circuit-level neural dynamics in neurodegeneration

neuroscience | 2026-04-03 | 67 hypotheses Top: 1.000

Experiments (0)

Experimental studies targeting or related to this entity

ExperimentTypeDiseaseScoreFeasibilityModelStatusEst. Cost
No experiments found

Related Papers (0)

Scientific publications cited in analyses involving this entity

Title & PMIDAuthorsJournalYearCitations
No papers found

Debates (7)

Multi-agent debates referencing this entity

Investigate prion-like spreading of tau pathology through connected brain region

closed · Rounds: 4 · Score: 0.73 · 2026-04-22

Investigate prion-like spreading of tau pathology through connected brain region

closed · Rounds: 4 · Score: 0.90 · 2026-04-12

Epigenetic reprogramming in aging neurons

closed · Rounds: 4 · Score: 0.95 · 2026-04-10

APOE4 differs from APOE3 by C112R causing domain interaction that alters lipid b

closed · Rounds: 4 · Score: 0.89 · 2026-04-06

Tau propagation mechanisms and therapeutic interception points

closed · Rounds: 3 · Score: 0.95 · 2026-04-04

What gene expression changes in the aging mouse brain predict neurodegenerative

closed · Rounds: 4 · Score: 0.95 · 2026-04-03

Analyze circuit-level changes in neurodegeneration using Allen Institute Neural

closed · Rounds: 4 · Score: 0.95 · 2026-04-03

Related Research

Hypotheses and analyses mentioning CDK5 in their description or question text

No additional research found