gene

GENES

Entity Detail — Knowledge Graph Node

Understanding Entity Pages

This page aggregates everything SciDEX knows about GENES: its mechanistic relationships (Knowledge Graph edges), hypotheses targeting it, analyses mentioning it, and supporting scientific papers. The interactive graph below shows its immediate neighbors. All content is AI-synthesized from peer-reviewed literature.

7716Connections
30Hypotheses
0Analyses
50Outgoing
50Incoming
14Experiments
0Debates

Summary

GENES is a gene implicated in neurodegeneration research. Key relationships include: activates, associated with, regulates. Associated with ALS, Aging, Als. Connected to 5070 entities in the SciDEX knowledge graph.

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🧬 Gene Info
Gene SymbolGENES
PathwaysAdaptive Immunity, Akt, Ampk Signaling, Amyloid, Angiogenesis
GeneCardsGENES
Human Protein AtlasGENES
Associated DiseasesAging, Als, Alzheimer, Amyotrophic Lateral Sclerosis, Anxiety
Interactions6-OHDA, A2M, ABCA1, ABCA7, ABCB1, ABCG1
KG Connections7716 knowledge graph edges
DatabasesGeneCardsUniProtNCBI GeneHPASTRING

Wiki Pages (1)

Knowledge base pages for this entity

Canonical Page

Getting Started

scidex_docs · 1098 words

Pathway Diagram

graph TD
    subgraph Signaling["Signaling"]
        GENES["GENES"] -->|"regulates"| Neurodegeneration["Neurodegeneration"]
        GENES["GENES"] -.->|"inhibits"| Als_1["Als"]
        MIRNAS["MIRNAS"] -->|"regulates"| GENES["GENES"]
        PI3K["PI3K"] -.->|"inhibits"| GENES["GENES"]
        TFEB["TFEB"] -->|"activates"| GENES["GENES"]
        PTEN["PTEN"] -->|"activates"| GENES["GENES"]
        PI3K_3["PI3K"] -->|"activates"| GENES["GENES"]
    end
    subgraph Therapeutic["Therapeutic"]
        GENES["GENES"] -->|"therapeutic target"| Alzheimer["Alzheimer"]
        GENES["GENES"] -->|"therapeutic target"| Als["Als"]
        GENES["GENES"] -->|"therapeutic target"| Carcinoma["Carcinoma"]
        GENES["GENES"] -->|"therapeutic target"| Cancer["Cancer"]
    end
    subgraph Pathology["Pathology"]
        GENES["GENES"] -->|"associated with"| APOE["APOE"]
        GENES["GENES"] -->|"associated with"| Tumor["Tumor"]
        DNA["DNA"] -->|"associated with"| GENES["GENES"]
    end
    subgraph Interactions["Interactions"]
        GENES["GENES"] -->|"interacts with"| Als_2["Als"]
    end
    style GENES fill:#4a1a6b,stroke:#4fc3f7,stroke-width:3px,color:#e0e0e0,font-weight:bold
    style Neurodegeneration fill:#ef5350,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0
    style Alzheimer fill:#ef5350,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0
    style Als fill:#ef5350,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0
    style APOE fill:#4a1a6b,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0
    style Als_1 fill:#ef5350,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0
    style Tumor fill:#ef5350,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0
    style Carcinoma fill:#ef5350,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0
    style Cancer fill:#ef5350,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0
    style Als_2 fill:#ef5350,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0
    style MIRNAS fill:#4a1a6b,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0
    style DNA fill:#4a1a6b,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0
    style PI3K fill:#4a1a6b,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0
    style TFEB fill:#4a1a6b,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0
    style PTEN fill:#4a1a6b,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0
    style PI3K_3 fill:#4a1a6b,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0

Outgoing (4664)

TargetRelationTypeStr
AUTOPHAGYassociated_withgene1.00
Inflammationassociated_withdisease1.00
Alzheimerassociated_withdisease1.00
Alsexpressed_indisease1.00
Agingassociated_withdisease1.00

Incoming (3052)

SourceRelationTypeStr
APOPTOSISassociated_withgene1.00
HIFactivatesgene1.00
MIRNASassociated_withgene1.00
NEURODEGENERATIONcausesgene1.00
STAT3associated_withgene1.00

Targeting Hypotheses (30)

Hypotheses where this entity is a therapeutic target

HypothesisScoreDiseaseAnalysis
Closed-loop tACS targeting EC-II parvalbumin interneurons to 0.831 Alzheimer's disease Circuit-level neural dynamics in neurode
SIRT1 Activation Couples Mitochondrial Biogenesis to Ferropt 0.824 neurodegeneration View
Hippocampal CA3-CA1 circuit rescue via neurogenesis and syna 0.820 Alzheimer's disease Circuit-level neural dynamics in neurode
Extracellular Vesicle Biogenesis Modulation 0.814 neurodegeneration Tau propagation mechanisms and therapeut
TFEB-Dependent Lysosome Biogenesis 0.690 neurodegeneration How does controlled lysosomal membrane p
Hypocretin-Neurogenesis Coupling Therapy 0.688 neurodegeneration Sleep disruption as cause and consequenc
Pharmacological EZH2 Inhibition Resets Polycomb-Mediated Rep 0.680 neurodegeneration epigenetic reprogramming aging neurons
TFEB-mediated transcriptional upregulation of lysosomal gene 0.680 neuroscience Lysosomal dysfunction and cathepsin leak
Mitochondrial Biogenesis Rate as a Dynamic Biomarker of Neur 0.652 translational neuroscience Which metabolic biomarkers can distingui
NeuroD1-Mediated Astrocyte Reprogramming Attenuates Neuroinf 0.650 neurodegeneration epigenetic reprogramming aging neurons
Neuronal TET1 Upregulation Reactivates Immediate-Early Genes 0.640 neurodegeneration epigenetic reprogramming aging neurons
APOE4 drives astrocyte metabolic reprogramming toward glycol 0.580 neuroscience APOE4-driven lipid metabolism dysregulat
Direct NF-κB Transcriptional Regulation of C1q Genes in Micr 0.570 neuroinflammation How does sevoflurane-induced NF-κB activ
Synergistic enhancement of autophagy and lysosomal biogenesi 0.565 neuroscience Lysosomal dysfunction and cathepsin leak
TRPML1-PINK1/Parkin Axis Coordinates Mitophagy with Lysosoma 0.560 neurodegeneration Does TRPML1 enhancement cause therapeuti
Extracellular Vesicle Biogenesis Modulation 0.558 Alzheimer's Disease Tau propagation mechanisms and therapeut
Metabolic Rescue PDH Activation (H5): Indirect Lipogenesis S 0.550 neurodegeneration Does restoring neuronal AMPK activity re
TFEB Activation to Restore Lysosomal Biogenesis in Aged Syna 0.533 proteomics Quantitative proteomics of the aging syn
Polycomb-to-Trithorax Switch at Synaptic Plasticity Genes 0.530 neurodegeneration Comparative epigenetic signatures: DNA m
H4: Polycomb Repression Relaxes at Neurodevelopment Genes 0.530 neurodegeneration Investigate mechanisms of epigenetic rep
HBOT at 2.0 ATA for 60 minutes restores PGC-1α-mediated mito 0.520 neurodegeneration What are the optimal oxygen pressure, du
TFEB-Mediated Lysosomal Biogenesis Enhancement for NLRP3 Inf 0.485 Neuroinflammation Immune atlas neuroinflammation analysis
C1Q-Glia Cross-Talk in Vascular Dementia Pathogenesis 0.470 neuroinflammation What are the specific molecular mechanis
Moderate hyperoxia (1.5-2.0 ATA) optimally stabilizes HIF-1α 0.470 neurodegeneration What are the optimal oxygen pressure, du
Alpha-Beta Oscillation Entrainment Enhances lncRNA-9969-Medi 0.451 molecular neurobiology View
HBOT at 2.0 ATA for 60 min, 5x/week for 6 weeks enhances hip 0.450 neurodegeneration What are the optimal oxygen pressure, du
Theta-Gamma Coupling Modulates lncRNA-9969-Mediated Mitochon 0.438 molecular neurobiology View
Epigenetic Silencing of Tumor Suppressor Genes in Cancer Pro 0.438 - -
Bivalent Domain Resolution Failure at Neurodevelopment Genes 0.410 neurodegeneration Comparative epigenetic signatures: DNA m
EZH2 Inhibitor Therapy to Restore Neuronal Identity Genes 0.320 neurodegeneration Comparative epigenetic signatures across

Mentioning Analyses (0)

Scientific analyses that reference this entity

No analyses mention this entity

Experiments (14)

Experimental studies targeting or related to this entity

ExperimentTypeDiseaseScoreFeasibilityModelStatusEst. Cost
Irisin effects on osteogenic differentiation in mesenchymal stem cells exploratory bone fracture 0.900 0.00 mouse bone mesenchymal stem ce proposed N/A
Spp1 knockout prevents synaptic loss in AD mouse models validation Alzheimer's disease 0.900 0.00 Spp1 knockout AD mouse models proposed N/A
Synaptic plasticity and protein expression analysis in mPFC exploratory insomnia-anxiety comorbidity 0.850 0.00 mPFC brain slices from PCPA-tr proposed N/A
s:** - Test whether HCN1 knockout specifically in EC layer II accelera falsification Alzheimer's Disease 0.400 0.50 cell_line proposed $80,000
AD Amyloid-Resilient Phenotype Study — Why Some amyloid-Positive Indiv clinical Alzheimer's Disease 0.400 0.50 human proposed $6,550,000
AD Combination Therapy Trial: Anti-Aβ + Anti-Tau clinical Alzheimer's Disease 0.400 0.50 cell_line proposed $180,000
Animal Model Comparison for Neurodegenerative Disease Therapeutics clinical Alzheimer's Disease 0.400 0.50 human proposed $7,100,000
Biomarker-Guided Sequential Therapy Selection in Alzheimer's Disease clinical Alzheimer's Disease 0.400 0.50 human proposed $5,460,000
tACS Connectivity Trial in Early Alzheimer's clinical Alzheimer's Disease 0.400 0.50 human proposed $5,460,000
Brain Connectivity-Targeted tACS Trial in Early AD clinical Alzheimer's Disease 0.400 0.50 mouse proposed $730,000
Cognitive Reserve Mechanisms in Alzheimer's Disease — Molecular Basis clinical Alzheimer's Disease 0.400 0.50 human proposed $6,550,000
Brainstem Circuit Modulation for PSP clinical ALS 0.400 0.50 human proposed $5,460,000
Neural Stem Cell Therapy for Alzheimer's Disease clinical Alzheimer's Disease 0.400 0.50 human proposed $5,460,000
Sleep and Respiratory Network Interaction in ALS — Experiment Design clinical ALS 0.400 0.50 human proposed $5,460,000

Related Papers (20)

Scientific publications cited in analyses involving this entity

Title & PMIDAuthorsJournalYearCitations
EMI1 switches from being a substrate to an inhibitor of APC/C(CDH1) to start the [PMID:29875408] Cappell SD, Mark KG, Garbett D, Pack LR, Nature 2018 1
Metabolic fate of glucose and candidate signaling and excess-fuel detoxification [PMID:28280244] Mugabo Y, Zhao S, Lamontagne J, Al-Mass J Biol Chem 2017 1
Sleep drives metabolite clearance from the adult brain. [PMID:24136970] Xie L, Kang H, Xu Q, Chen MJ, Liao Y, Th Science 2013 1
Exposure to 1800 MHz radiofrequency radiation induces oxidative damage to mitoch [PMID:19879861] Xu S, Zhou Z, Zhang L, Yu Z, Zhang W, Wa Brain Res 2010 1
Nucleotide signaling and cutaneous mechanisms of pain transduction. [PMID:19171165] Dussor G, Koerber HR, Oaklander AL, Rice Brain Res Rev 2009 1
Antidepressant effects of combined eucommia-gastrodia extract via modulation of [PMID:41921863] Xue L, Pan Z, Liu Y, Gan Q, Liu D, Liu D Brain research bulletin 2026 0
Complementary mechanisms of high-carbohydrate diets and ketogenic diets restore [PMID:41475465] Kwon H, Seo DS, Ahmad Y, Park S, Yoo J, The Journal of nutritional bio 2026 0
TrkB promotes the neuronal secretion of soluble Siglec-2 (CD22) to mitigate micr [PMID:41922794] Shi X, Cai SZ, Chai JL, Xu CY, Zhou BY, Molecular psychiatry 2026 0
The Potential Functions and Beneficial Effects of Melatonin on Cognitive Impairm [PMID:41917799] Li XY, Cheng YZ, Zhang YM, Hu F, Fang SK Brain and behavior 2026 0
Biomarkers for Alzheimer's disease across diverse biological domains: an umbrell [PMID:40680830] Kang J, Son Y, Yim Y, Cho H, Kim J et al J Adv Res 2026 0
Nanotherapeutic potential of Baicalein-encapsulated hUC-MSC exosomes in Alzheime [PMID:41370943] Xu J, He Z, Pan Y, Cao B, Chen G Biomater Adv 2026 0
Epigenetic mechanisms and therapeutic innovations in chronic pain-associated neu [PMID:41554641] Zhang K, Zhu S, Xing N, Zhou Z, Chen J e Br J Pharmacol 2026 0
Postbiotics and the gut-brain axis: A mechanistic review on modulating neuroinfl [PMID:41570486] Lahariya R, Anand G, Kumari B, Priyadars J Neuroimmunol 2026 0
miRNA-206 in muscle and central nervous system crosstalk during exercise: A doub [PMID:41571168] Malvandi AM, Gerosa L, Maroni P, Orlando Neurosci Biobehav Rev 2026 0
Experts' narrative review "Mastication, Hippocampal Structure Changes and Cognit [PMID:41576846] Piancino MG Arch Oral Biol 2026 0
Plant-derived bioactive compounds modulate the gut microbiota in Alzheimer's dis [PMID:41678917] Xue D, Hu X, Li R, Sun T, Qian S et al. Phytomedicine 2026 0
Dysregulation of Drp1 and Mfn2 is associated with reduced PSD-95, synaptophysin, [PMID:41932483] Alfateh M, Vasconcelos C, Choker AH, Moh Int J Biol Macromol 2026 0
AICAR improves depression-like behaviors and is associated with hippocampal AMPK [PMID:41932583] Takahashi K, Kurokawa K, Kawaguchi R, Ta Neurochem Int 2026 0
Human umbilical cord mesenchymal stem cells therapy for Alzheimer's disease: a s [PMID:41847685] Si C, Ma L, Ding W, Tian Y, Zhang J, Cao Frontiers in neurology 2026 0
Cannabidiol and pBDNF Cotreatment Attenuates Pathological Symptoms and Improves [PMID:41924980] Chaulagain B, Gothwal A, Mahanta AK, Jar ACS chemical neuroscience 2026 0

Debates (0)

Multi-agent debates referencing this entity

No debates reference this entity