gene

C1Q

Entity Detail — Knowledge Graph Node

Understanding Entity Pages

This page aggregates everything SciDEX knows about C1Q: its mechanistic relationships (Knowledge Graph edges), hypotheses targeting it, analyses mentioning it, and supporting scientific papers. The interactive graph below shows its immediate neighbors. All content is AI-synthesized from peer-reviewed literature.

1531Connections
30Hypotheses
23Analyses
50Outgoing
50Incoming
18Experiments
20Debates

Summary

C1Q is a gene implicated in neurodegeneration research. Key relationships include: activates, associated with, interacts with. Associated with AD, ALI, ALS. Connected to 856 entities in the SciDEX knowledge graph.

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🧬 Gene Info
Gene SymbolC1QA
Full NameComplement Component 1, Q Subunit A
Chromosome1p36.33
Protein TypeSignaling Protein
Target ClassSignaling Protein
FunctionThe C1QA gene encodes the A-chain of complement component C1q.
Mechanism of ActionComplement cascade inhibitor or antibody-mediated neutralization
Primary ExpressionPrimarily expressed in myeloid cells (monocytes, macrophages, microglia); astrocytic expression detected in disease states
Subcellular Localizationsynapses, dystrophic neurites, extracellular protein aggregates, and vascular interfaces. These features make C1QA a hig
DruggabilityLow (0.41)
Clinical StagePhase II
Amino Acids245 aa
PathwaysComplement, Complement system, Synaptic pruning, complement activation
UniProt IDP02787
NCBI Gene ID712
Ensembl IDENSG00000196954
OMIM120550
GeneCardsC1QA
Human Protein AtlasC1QA
Associated DiseasesAD, Aging, ALI, Als, Alzheimer
Known Drugs/CompoundsANX005
InteractionsAIF1, ALZHEIMER, ALZHEIMER'S DISEASE, AMYLOID, AND, ANXIETY
SciDEX TargetView Target Profile (7 clinical trials)
SciDEX HypothesesComplement C1q Mimetic Decoy Therapy
Complement C1QA Spatial Gradient in Cortical Layer
Complement C1q Subtype Switching (+3 more)
KG Connections704 knowledge graph edges
DatabasesGeneCardsHPASTRING
🔮 Predicted Structure: C1Q — AlphaFold P02745 Click to expand

AI-predicted structure from AlphaFold | Powered by Mol*

Wiki Pages (7)

Knowledge base pages for this entity

Canonical Page

C1QA Gene — Complement Component 1q A Chain

gene · 2340 words

C1QB Protein — Complement Component 1 Q

protein · 1611 words

C1QA Gene

gene · 1552 words

C1Q Protein (Complement Component 1q)

protein · 714 words

C1QB — Complement Component 1Q Beta

gene · 683 words

C1QC Protein

protein · 647 words

Pathway Diagram

graph TD
    C1Q["C1Q"] -->|"associated"| neurodegeneration["neurodegeneration"]
    C1Q["C1Q"] -->|"interacts"| C3["C3"]
    C1Q["C1Q"] -->|"co discussed"| NAMPT["NAMPT"]
    C1Q["C1Q"] -->|"co discussed"| GPX4["GPX4"]
    C1Q["C1Q"] -->|"co discussed"| PLA2G6["PLA2G6"]
    C1Q["C1Q"] -->|"co discussed"| MMP2["MMP2"]
    C3_1["C3"] -->|"interacts"| C1Q["C1Q"]
    MMP9["MMP9"] -->|"co discussed"| C1Q["C1Q"]
    SLC7A11["SLC7A11"] -->|"co discussed"| C1Q["C1Q"]
    AQP4["AQP4"] -->|"co discussed"| C1Q["C1Q"]
    style C1Q fill:#4a1a6b,stroke:#4fc3f7,stroke-width:2px,color:#e0e0e0

Outgoing (1090)

TargetRelationTypeStr
PHAGOCYTOSISactivatesphenotype1.00
CR3signals_throughreceptor1.00
phagocytosisactivatesphenotype1.00
Alsassociated_withdisease1.00
MICROGLIAactivatescell_type1.00

Incoming (441)

SourceRelationTypeStr
ALZHEIMER'S DISEASEassociated_withdisease1.00
COMPLEMENTactivatesgene1.00
MICROGLIAassociated_withgene1.00
NPTX2bindsprotein0.95
h-58e4635atargetshypothesis0.90

Targeting Hypotheses (30)

Hypotheses where this entity is a therapeutic target

HypothesisScoreDiseaseAnalysis
Selective blockade of classical-pathway activation downstrea 0.750 neurodegeneration Does C1q function differ based on subcel
C1QA/C1QB Subunit-Specific Inhibition to Block Aberrant PV I 0.747 neurodegeneration Are interneuron oscillation deficits com
TBK1 Loss-of-Function Amplifies C1q-Mediated Synapse Elimina 0.724 neurodegeneration How do the seven novel ALS genes functio
Excessive C1q/C3/CR3 complement cascade activation initiates 0.720 neurodegeneration Synaptic pruning by microglia in neurode
Complement C1q Mimetic Decoy Therapy 0.695 neurodegeneration Synaptic pruning by microglia in early A
C1q-TREM2 Competition for Phosphatidylserine as Pruning Chec 0.680 Alzheimer's disease -
Complement C1QA Spatial Gradient in Cortical Layers 0.678 Alzheimer's Disease SEA-AD Gene Expression Profiling — Allen
Microglial TREM2 state determines whether C1q-tagged substra 0.670 neurodegeneration Does C1q function differ based on subcel
Complement C1q Subtype Switching 0.665 neurodegeneration 4R-tau strain-specific spreading pattern
Complement C1QA Inhibition Synergizes with PV Interneuron Mo 0.659 neurodegeneration What molecular mechanisms underlie the d
C1Q-Triggered NLRP3 Inflammasome Assembly in Plaque Macropha 0.640 neuroinflammation What are the specific molecular mechanis
C1q has spatially distinct functions, with synapse-bound C1q 0.630 neurodegeneration Does C1q function differ based on subcel
C1Q-Induced Foam Cell Formation via Scavenger Receptor Upreg 0.620 neuroinflammation What are the specific molecular mechanis
C1q effector output is determined more by binding partner id 0.610 neurodegeneration Does C1q function differ based on subcel
C1Q-Mediated Defective Efferocytosis Driving Necrotic Core E 0.600 neuroinflammation What are the specific molecular mechanis
Selective C1q-CRP vs. C1q-IgG Axis Inhibition 0.599 neuroinflammation How does Alectinib, a kinase inhibitor,
TREM2-C1Q Competitive Binding to Prevent Complement-Mediated 0.591 neurodegeneration Do β-amyloid plaques and neurofibrillary
APOE isoform modifies the C1q binding landscape, biasing C1q 0.590 neurodegeneration Does C1q function differ based on subcel
Direct NF-κB Transcriptional Regulation of C1q Genes in Micr 0.570 neuroinflammation How does sevoflurane-induced NF-κB activ
Complement C1q Suppression as Mechanism Linking Exercise Pla 0.560 neurodegeneration What are the specific circulating factor
C1q Binding to Specific Synaptic Proteomes via Neurexin/Neur 0.550 synaptic biology What determines the selectivity of compl
NFκB/C1Q SASP Modulation for Synaptic Protection 0.534 neurodegeneration View
C1q shows synapse-class-specific roles, with inhibitory vers 0.530 neurodegeneration Does C1q function differ based on subcel
C1Q-Angiogenic Axis Promoting Plaque Neovascularization 0.530 neuroinflammation What are the specific molecular mechanis
Tripartite Synapse Cell Type-Nonautonomous Crosstalk: Coordi 0.510 neurodegeneration Cell type vulnerability debate in Alzhei
NETosis Amplification by C1Q in Plaque Neutrophils 0.500 neuroinflammation What are the specific molecular mechanis
Alectinib-C1q Complex Hijacks TREM2's Synaptic Protective Bi 0.500 neuroinflammation How does Alectinib, a kinase inhibitor,
C1q-Mediated Delivery of miR-33 Antisense Oligonucleotides f 0.489 molecular biology Is APOE4's reduced lipid binding pathoge
C1Q-Glia Cross-Talk in Vascular Dementia Pathogenesis 0.470 neuroinflammation What are the specific molecular mechanis
Kinase Inhibitor-C1q Structural Convergence for Bifunctional 0.458 neuroinflammation How does Alectinib, a kinase inhibitor,

Mentioning Analyses (23)

Scientific analyses that reference this entity

Do β-amyloid plaques and neurofibrillary tangles cause or result from cholinergi

neurodegeneration | 2026-04-16 | 2 hypotheses Top: 0.616

Why does PRKN-mediated mitophagy, typically protective, cause harmful mitochondr

neurodegeneration | 2026-04-15 | 2 hypotheses Top: 0.455

Do these mechanistic hypotheses from the SEA-AD Atlas bundle explain layer-speci

neurodegeneration | 2026-04-10 | 0 hypotheses

Do these mechanistic hypotheses explain layer-specific synaptic vulnerability in

neurodegeneration | 2026-04-10 | 0 hypotheses

Mechanistic validation of SEA-AD differential expression hypotheses: Complement

neurodegeneration | 2026-04-10 | 0 hypotheses

Experiments (18)

Experimental studies targeting or related to this entity

ExperimentTypeDiseaseScoreFeasibilityModelStatusEst. Cost
Bidirectional Mendelian randomization analysis of C1Q and ischemic str exploratory Ischemic stroke, Atheroscleros 0.900 0.00 Human genetic association data proposed N/A
Bidirectional Mendelian randomization analysis of C1Q and ischemic str exploratory Ischemic stroke (large artery 0.900 0.00 human genetic data proposed N/A
Single-cell RNA sequencing analysis of human atherosclerotic plaques exploratory Atherosclerosis 0.900 0.00 Human atherosclerotic plaque s proposed N/A
Endothelium-specific TBK1 knockdown in atherosclerosis model validation atherosclerosis 0.900 0.00 endothelium-specific TBK1 knoc proposed N/A
TBK1-PAK1IP1-PAK1 signaling pathway analysis exploratory atherosclerosis 0.900 0.00 endothelial cells proposed N/A
C1q neutralization experiment validation perioperative neurocognitive d 0.900 0.00 rats proposed N/A
scRNA-seq analysis of human atherosclerotic plaques exploratory Atherosclerosis 0.900 0.00 human atherosclerotic plaque s proposed N/A
Sevoflurane-induced neurotoxicity (SIN) model in rats validation perioperative neurocognitive d 0.900 0.00 rats proposed N/A
Machine learning-based identification of C1Q hub genes exploratory Atherosclerosis 0.900 0.00 Human bulk RNA sequencing data proposed N/A
Gene expression validation in apoE-/- mice validation Atherosclerosis 0.850 0.00 apoE-/- mice proposed N/A
ox-LDL treatment of RAW264.7 macrophages exploratory Atherosclerosis 0.850 0.00 RAW264.7 macrophages proposed N/A
GSK8612 treatment in atherosclerosis model validation atherosclerosis 0.800 0.00 atherosclerosis mouse model proposed N/A
LC-MS/Western blot analysis of TBK1 in atherosclerotic arteries exploratory atherosclerosis 0.800 0.00 mouse and human arteries with proposed N/A
Validation of hub genes in ox-LDL treated RAW264.7 macrophages exploratory Atherosclerosis 0.800 0.00 RAW264.7 macrophages proposed N/A
Validation of hub genes in apoE-/- atherosclerotic mice validation Atherosclerosis 0.800 0.00 apoE-/- mice proposed N/A
s:** - Compare brain penetration in FcRn+/+ vs FcRn-/- mice with engin falsification Neuroinflammation 0.400 0.50 mouse proposed $200,000
Proposed experiment from debate on Synaptic pruning by microglia in ea falsification Alzheimer's Disease 0.400 0.50 mouse proposed $200,000
Experiment: Autoimmune Hypothesis Testing in AD clinical Alzheimer's Disease 0.400 0.50 human proposed $5,460,000

Related Papers (20)

Scientific publications cited in analyses involving this entity

Title & PMIDAuthorsJournalYearCitations
Prolonged anesthesia induces neuroinflammation and complement-mediated microglia [PMID:36600274] Xu F, Han L, Wang Y, Deng D, Ding Y, Zha BMC Med 2023 2
Perivascular cells induce microglial phagocytic states and synaptic engulfment v [PMID:36747024] De Schepper S, Ge JZ, Sierksma A, Crowle Nat Neurosci 2023 2
An integrative analysis of single-cell and bulk transcriptome and bidirectional [PMID:38179058] Cui HK, Tang CJ, Gao Y, Li ZA, Zhang J, Front Immunol 2023 2
Early complement genes are associated with visual system degeneration in multipl [PMID:31289819] Fitzgerald KC, Kim K, Smith MD, Aston SA Brain 2019 1
Synaptic pruning genes networks in Alzheimer's disease: correlations with neurop [PMID:40515808] Sanfilippo C, Castrogiovanni P, Imbesi R Geroscience 2026 0
Restricting intracellular Salmonella proliferation by coordinating p-TBK1 mediat [PMID:40660474] Li J, Yang Y, Ge Y, Zhang X, Liu H et al Autophagy 2026 0
Aberrant STING signalling promotes endothelial dysfunction and neurovascular inj [PMID:41419617] Qin X, Chen S, Sun Y, Ma Z, Niu C et al. Diabetologia 2026 0
TBK1 orchestrates autophagy and endo-lysosomal pathways in human neurons. [PMID:41485128] Mordes DA, Smeyers J Autophagy 2026 0
Dynamic regulation of TBK1 lactylation shapes antiviral immune responses. [PMID:41530535] Xie Y, Zhang Y, Peng W, Zhang L, Hu Z et Cell Mol Immunol 2026 0
RIG-I Mediated Neuron-Specific IFN Type 1 Signaling in FUS-ALS Induces Neurodege [PMID:41603250] Naumann M, Wierschin TM, Kretschmer S, D Adv Sci (Weinh) 2026 0
Molecular Insights Into Canine Hepatocellular Carcinoma: A Cross-Species Transcr [PMID:41664952] Arif M, Hasan MN, Nozaki N, Ide Y, Akiya Mol Carcinog 2026 0
BTK inhibition suppresses neuroinflammation and neurodegeneration in amyotrophic [PMID:41710977] Liu Q, Zhang X, Wang L, Chen H, Wang G e Brain 2026 0
Systematic Review: Porphyromonas gingivalis Outer Membrane Vesicles From Pathoge [PMID:41980468] Li Z, Luo C, Wen P, Zou T, Jin Z et al. Int Dent J 2026 0
Synaptic pruning genes networks in Alzheimer's disease: correlations with neurop [PMID:40515808] Sanfilippo C, Castrogiovanni P, Imbesi R GeroScience 2026 0
Phosphoproteomics uncovers a neuroimmune perspective on trigeminal neuralgia: se [PMID:41853292] Zhai X, Lin X, Zhang L, Ren Y, Miao H, M Frontiers in immunology 2026 0
Proteomic Signature in Men with Central Serous Chorioretinopathy. [PMID:41641862] Chambon C, Picard E, Zola M, Aichedo S, Journal of proteome research 2026 0
Machine Learning and Blood-Targeted Proteomics Enable Early Prediction and Etiol [PMID:41683823] Starodubtseva N, Tokareva A, Kononikhin International journal of molec 2026 0
TBK1 orchestrates autophagy and endo-lysosomal pathways in human neurons. [PMID:41485128] Mordes DA, Smeyers J Autophagy 2026 0
BTK inhibition suppresses neuroinflammation and neurodegeneration in amyotrophic [PMID:41710977] Liu Q, Zhang X, Wang L, Chen H, Wang G, Brain : a journal of neurology 2026 0
RIG-I Mediated Neuron-Specific IFN Type 1 Signaling in FUS-ALS Induces Neurodege [PMID:41603250] Naumann M, Wierschin TM, Kretschmer S, D Advanced science (Weinheim, Ba 2026 0

Debates (20)

Multi-agent debates referencing this entity

What is the role of microglial synaptic pruning in Alzheimer's disease and other

closed · Rounds: 4 · Score: 0.68 · 2026-04-22

While the study establishes C1QA and C1QC as diagnostic biomarkers and confirms

closed · Rounds: 4 · Score: 0.71 · 2026-04-21

Mechanistic validation of SEA-AD differential expression hypotheses: Complement

closed · Rounds: 0 · Score: 0.66 · 2026-04-21

Mechanistic validation of SEA-AD differential expression hypotheses: Complement

closed · Rounds: 0 · Score: 0.64 · 2026-04-21

Do these mechanistic hypotheses explain layer-specific synaptic vulnerability in

closed · Rounds: 4 · Score: 0.30 · 2026-04-21

Do these mechanistic hypotheses from the SEA-AD Atlas bundle explain layer-speci

closed · Rounds: 4 · Score: 0.30 · 2026-04-21

The abstract explicitly questions whether AD's hallmark pathologies induce choli

closed · Rounds: 4 · Score: 0.95 · 2026-04-16

The abstract reveals an unexpected contradiction where PRKN activation, normally

closed · Rounds: 4 · Score: 0.91 · 2026-04-15

Investigate prion-like spreading of tau pathology through connected brain region

closed · Rounds: 4 · Score: 0.90 · 2026-04-12

PSP and CBD both involve 4R-tau but produce distinct neuropathological patterns

closed · Rounds: 4 · Score: 0.69 · 2026-04-12

Related Research

Hypotheses and analyses mentioning C1Q in their description or question text

Complement C1QA Spatial Gradient in Cortical Layers

Score: 0.678 · Alzheimer's Disease · 2026-04-02

## Mechanistic Overview Complement C1QA Spatial Gradient in Cortical Layers starts from the claim that modulating C1QA w

Microglial TREM2 state determines whether C1q-tagged substrates are cleared adap

Score: 0.670 · neurodegeneration · 2026-04-25

This hypothesis reconciles conflicting C1q phenotypes by placing receiver-cell state downstream of a common upstream C1q

Complement C1q Subtype Switching

Score: 0.665 · neurodegeneration · 2026-04-02

## Mechanistic Overview Complement C1q Subtype Switching starts from the claim that modulating C1QA within the disease c

Complement C1QA Inhibition Synergizes with PV Interneuron Modulation

Score: 0.659 · neurodegeneration · 2026-04-13

## Mechanistic Overview Complement C1QA Inhibition Synergizes with PV Interneuron Modulation starts from the claim that

C1Q-Triggered NLRP3 Inflammasome Assembly in Plaque Macrophages

Score: 0.640 · neuroinflammation · 2026-04-21

**Molecular Mechanism and Rationale** The C1Q complement system component represents a critical bridge between innate i

C1q has spatially distinct functions, with synapse-bound C1q primarily nucleatin

Score: 0.630 · neurodegeneration · 2026-04-25

The strongest spatial model is a split between substrate marking at synapses and state modulation at microglia. The syna

C1Q-Induced Foam Cell Formation via Scavenger Receptor Upregulation

Score: 0.620 · neuroinflammation · 2026-04-21

## Mechanistic Overview C1Q-Induced Foam Cell Formation via Scavenger Receptor Upregulation starts from the claim that m

C1q effector output is determined more by binding partner identity than by subce

Score: 0.610 · neurodegeneration · 2026-04-25

Under this model, C1q is a context decoder whose downstream program depends chiefly on the biochemical identity of the c

C1Q-Mediated Defective Efferocytosis Driving Necrotic Core Expansion

Score: 0.600 · neuroinflammation · 2026-04-21

## Mechanistic Overview C1Q-Mediated Defective Efferocytosis Driving Necrotic Core Expansion starts from the claim that

Selective C1q-CRP vs. C1q-IgG Axis Inhibition

Score: 0.599 · neuroinflammation · 2026-04-16

## Mechanistic Overview Selective C1q-CRP vs. C1q-IgG Axis Inhibition starts from the claim that modulating C1QA/C1QB/C1

TREM2-C1Q Competitive Binding to Prevent Complement-Mediated Cholinergic Synapse

Score: 0.591 · neurodegeneration · 2026-04-16

**Molecular Mechanism and Rationale** The TREM2-C1Q competitive binding hypothesis centers on the intricate molecular i

APOE isoform modifies the C1q binding landscape, biasing C1q toward inflammatory

Score: 0.590 · neurodegeneration · 2026-04-25

This is best treated as a stratification and response-modifier hypothesis rather than a primary C1q mechanism. APOE4 may

Direct NF-κB Transcriptional Regulation of C1q Genes in Microglia

Score: 0.570 · neuroinflammation · 2026-04-21

## Mechanistic Overview Direct NF-κB Transcriptional Regulation of C1q Genes in Microglia starts from the claim that mod

Complement C1q Suppression as Mechanism Linking Exercise Plasma to PV Interneuro

Score: 0.560 · neurodegeneration · 2026-04-14

## Mechanistic Overview Complement C1q Suppression as Mechanism Linking Exercise Plasma to PV Interneuron Protection sta