Early Proteasome Restoration Therapy

Target: PSMC Composite Score: 0.712 Price: $0.66▲31.4% Citation Quality: Pending neurodegeneration Status: promoted
☰ Compare⚔ Duel⚛ Collideinteract with this hypothesis
🧠 Neurodegeneration 🟡 ALS / Motor Neuron Disease 🟢 Parkinson's Disease 🔴 Alzheimer's Disease 🔥 Neuroinflammation 🔬 Microglial Biology 🔮 Lysosomal / Autophagy
✓ All Quality Gates Passed
Quality Report Card click to collapse
B+
Composite: 0.712
Top 22% of 1222 hypotheses
T2 Supported
Literature-backed with debate validation
Needs convergence ≥0.40 (current: 0.34) for Established
A Mech. Plausibility 15% 0.85 Top 15%
B+ Evidence Strength 15% 0.75 Top 18%
B+ Novelty 12% 0.70 Top 51%
B+ Feasibility 12% 0.75 Top 27%
A Impact 12% 0.80 Top 23%
B+ Druggability 10% 0.75 Top 28%
B Safety Profile 8% 0.60 Top 37%
A Competition 6% 0.80 Top 23%
B+ Data Availability 5% 0.75 Top 25%
B+ Reproducibility 5% 0.70 Top 28%
Evidence
12 supporting | 2 opposing
Citation quality: 70%
Debates
1 session A+
Avg quality: 0.95
Convergence
0.34 D 30 related hypothesis share this target

From Analysis:

Gene expression changes in aging mouse brain predicting neurodegenerative vulnerability

What gene expression changes in the aging mouse brain predict neurodegenerative vulnerability? Use Allen Aging Mouse Brain Atlas data. Cross-reference with human AD datasets. Produce hypotheses about aging-neurodegeneration mechanisms.

→ View full analysis & debate transcript

Hypotheses from Same Analysis (8)

These hypotheses emerged from the same multi-agent debate that produced this hypothesis.

TREM2-Dependent Astrocyte-Microglia Cross-talk in Neurodegeneration
Score: 0.990 | Target: TREM2
TREM2-Dependent Microglial Senescence Transition
Score: 0.950 | Target: TREM2
TREM2-ASM Crosstalk in Microglial Lysosomal Senescence
Score: 0.910 | Target: SMPD1
TREM2-Mediated Astrocyte-Microglia Cross-Talk in Neurodegeneration
Score: 0.907 | Target: TREM2
SIRT1-Mediated Reversal of TREM2-Dependent Microglial Senescence
Score: 0.895 | Target: SIRT1
TREM2-Mediated Astrocyte-Microglia Crosstalk in Neurodegeneration
Score: 0.892 | Target: TREM2
TREM2-Mediated Astrocyte-Microglia Cross-Talk in Neurodegeneration
Score: 0.880 | Target: TREM2
TREM2-Mediated Astrocyte-Microglia Cross-Talk in Neurodegeneration
Score: 0.875 | Target: TREM2

→ View full analysis & all 9 hypotheses

Description

Molecular Mechanism and Rationale

The 26S proteasome represents the primary degradation machinery for misfolded and damaged proteins in eukaryotic cells, comprising a 20S catalytic core particle flanked by two 19S regulatory particles. The PSMC (Proteasome 26S Subunit, ATPase) gene family encodes six distinct ATPase subunits (PSMC1-6) that form the base of the 19S regulatory particle, serving as the molecular motors that unfold substrate proteins and translocate them into the catalytic chamber. These AAA+ (ATPases Associated with diverse cellular Activities) proteins operate through coordinated ATP hydrolysis cycles, with each subunit containing distinct nucleotide-binding domains and C-terminal HbYX motifs that interact with α-subunits of the 20S core.

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No AI visual card yet

Curated Mechanism Pathway

Curated pathway diagram from expert analysis

flowchart TD
    A["Aging Process
Oxidative Stress"] --> B["PSMC Subunit
Dysfunction"] A --> C["NAD+ Depletion
SIRT1 Inactivation"] B --> D["Cys522 Oxidation
PSMC1 ATPase Loss"] B --> E["Cys181 Nitrosylation
PSMC5 Threading Defect"] C --> F["PSMC2 Hyperacetylation
K195/K287 Sites"] D --> G["26S Proteasome
Assembly Disruption"] E --> G F --> G G --> H["Protein Aggregation
Misfolded Proteins"] H --> I["Tau Pathology
Amyloid-beta Accumulation"] I --> J["Neuroinflammation
Microglial Activation"] K[" PSMC Restoration
Therapy"] --> L["Enhanced ATPase
Activity Recovery"] K --> M["Improved Substrate
Threading Efficiency"] L --> N["Restored 26S
Proteasome Function"] M --> N N --> O["Protein Quality
Control Enhancement"] O --> P["Reduced Pathological
Protein Burden"] P --> Q["Neuroprotection
Synaptic Preservation"] J --> R["Cognitive Decline
Neurodegeneration"] Q -.-> S["Therapeutic Benefit
Cognitive Improvement"] N -.-> H O -.-> I style K fill:#4fc3f7,stroke:#0277bd,stroke-width:3px style L fill:#4fc3f7,stroke:#0277bd style M fill:#4fc3f7,stroke:#0277bd style N fill:#81c784,stroke:#2e7d32 style O fill:#81c784,stroke:#2e7d32 style P fill:#81c784,stroke:#2e7d32 style Q fill:#81c784,stroke:#2e7d32 style S fill:#81c784,stroke:#2e7d32 style H fill:#ef5350,stroke:#c62828 style I fill:#ef5350,stroke:#c62828 style J fill:#ef5350,stroke:#c62828 style R fill:#ef5350,stroke:#c62828,stroke-width:3px

Dimension Scores

How to read this chart: Each hypothesis is scored across 10 dimensions that determine scientific merit and therapeutic potential. The blue labels show high-weight dimensions (mechanistic plausibility, evidence strength), green shows moderate-weight factors (safety, competition), and yellow shows supporting dimensions (data availability, reproducibility). Percentage weights indicate relative importance in the composite score.
Mechanistic 0.85 (15%) Evidence 0.75 (15%) Novelty 0.70 (12%) Feasibility 0.75 (12%) Impact 0.80 (12%) Druggability 0.75 (10%) Safety 0.60 (8%) Competition 0.80 (6%) Data Avail. 0.75 (5%) Reproducible 0.70 (5%) 0.712 composite
14 citations 14 with PMID 9 medium Validation: 70% 12 supporting / 2 opposing
For (12)
9
No opposing evidence
(2) Against
High Medium Low
High Medium Low
Evidence Matrix — sortable by strength/year, click Abstract to expand
Evidence Types
9
3
1
1
MECH 9CLIN 3GENE 1EPID 1
ClaimStanceCategorySourceStrength ↕Year ↕Quality ↕PMIDsAbstract
Proteasome dysfunction drives proteotoxic stress i…SupportingMECHAutophagy MEDIUM20260.49PMID:41313318
Proteasome dysfunction drives proteotoxic stress i…SupportingMECHNeurochem Int MEDIUM20250.33PMID:40348194
Proteasome dysfunction drives proteotoxic stress i…SupportingMECHBiogerontology MEDIUM20250.33PMID:40323531
Proteasome dysfunction drives proteotoxic stress i…SupportingMECHMed Res Rev MEDIUM20200.33PMID:32043639
Proteasome dysfunction drives proteotoxic stress i…SupportingMECHFront Aging Neu… MEDIUM20220.33PMID:35517053
Proteasome dysfunction drives proteotoxic stress i…SupportingMECHFront Aging Neu… MEDIUM20220.33PMID:35615589
Proteasome dysfunction drives proteotoxic stress i…SupportingGENECell Signal MEDIUM20210.33PMID:33207262
Proteasome dysfunction drives proteotoxic stress i…SupportingCLINNeurobiol Aging MEDIUM20210.33PMID:34062489
Proteasome dysfunction drives proteotoxic stress i…SupportingCLINNeurobiol Aging MEDIUM20130.33PMID:23810450
New research demonstrates that early proteasome do…SupportingMECH----PMID:40488453-
The proteasome-ubiquitin system is recognized as a…SupportingMECH----PMID:37123415-
Unveiling the Genomic Landscape of Yan Goose (Anse…SupportingEPIDAnimals (Basel)-20260.33PMID:41594384-
Proteasome inhibitors like bortezomib cause severe…OpposingCLIN----PMID:23973385-
Some studies suggest autophagy enhancement, not pr…OpposingMECH----PMID:18640276-
Legacy Card View — expandable citation cards

Supporting Evidence 12

New research demonstrates that early proteasome downregulation and dysfunction drive proteostasis failure in A…
New research demonstrates that early proteasome downregulation and dysfunction drive proteostasis failure in Alzheimer's disease, occurring before substantial pathology develops
The proteasome-ubiquitin system is recognized as a key modulator of nervous system function and brain aging
Proteasome dysfunction drives proteotoxic stress in neurodegeneration MEDIUM
Autophagy · 2026 · PMID:41313318 · Q:0.49
ABSTRACT

NAD(+) restores proteostasis through splicing-dependent autophagy.

Proteasome dysfunction drives proteotoxic stress in neurodegeneration MEDIUM
Neurochem Int · 2025 · PMID:40348194 · Q:0.33
ABSTRACT

Proteostasis and autophagy disruption by the aging-related VGVAPG hexapeptide - preliminary insights into a potential novel elastin-induced neurodegeneration pathway in an in vitro human cellular neuron model.

Proteasome dysfunction drives proteotoxic stress in neurodegeneration MEDIUM
Biogerontology · 2025 · PMID:40323531 · Q:0.33
ABSTRACT

CHIP and aging: a key regulator of proteostasis and cellular senescence.

Proteasome dysfunction drives proteotoxic stress in neurodegeneration MEDIUM
Med Res Rev · 2020 · PMID:32043639 · Q:0.33
ABSTRACT

How autophagy can restore proteostasis defects in multiple diseases?

Proteasome dysfunction drives proteotoxic stress in neurodegeneration MEDIUM
Front Aging Neurosci · 2022 · PMID:35517053 · Q:0.33
ABSTRACT

A Potential Mechanism for Targeting Aggregates With Proteasomes and Disaggregases in Liquid Droplets.

Proteasome dysfunction drives proteotoxic stress in neurodegeneration MEDIUM
Front Aging Neurosci · 2022 · PMID:35615589 · Q:0.33
ABSTRACT

Deciphering the Link Between ER(UPR) Signaling and MicroRNA in Pathogenesis of Alzheimer's Disease.

Proteasome dysfunction drives proteotoxic stress in neurodegeneration MEDIUM
Cell Signal · 2021 · PMID:33207262 · Q:0.33
ABSTRACT

LRSAM1 E3 ubiquitin ligase promotes proteasomal clearance of E6-AP protein.

Proteasome dysfunction drives proteotoxic stress in neurodegeneration MEDIUM
Neurobiol Aging · 2021 · PMID:34062489 · Q:0.33
ABSTRACT

Amyloid toxicity in a Drosophila Alzheimer's model is ameliorated by autophagy activation.

Proteasome dysfunction drives proteotoxic stress in neurodegeneration MEDIUM
Neurobiol Aging · 2013 · PMID:23810450 · Q:0.33
ABSTRACT

Clearance of the mutant androgen receptor in motoneuronal models of spinal and bulbar muscular atrophy.

Unveiling the Genomic Landscape of Yan Goose (Anser cygnoides): Insights into Population History and Selection…
Unveiling the Genomic Landscape of Yan Goose (Anser cygnoides): Insights into Population History and Selection Signatures for Growth and Adaptation.
Animals (Basel) · 2026 · PMID:41594384 · Q:0.33

Opposing Evidence 2

Proteasome inhibitors like bortezomib cause severe peripheral neuropathy, indicating the system requires caref…
Proteasome inhibitors like bortezomib cause severe peripheral neuropathy, indicating the system requires careful balance
Some studies suggest autophagy enhancement, not proteasome activation, is more beneficial for neurodegeneratio…
Some studies suggest autophagy enhancement, not proteasome activation, is more beneficial for neurodegeneration
Multi-persona evaluation: This hypothesis was debated by AI agents with complementary expertise. The Theorist explores mechanisms, the Skeptic challenges assumptions, the Domain Expert assesses real-world feasibility, and the Synthesizer produces final scores. Expand each card to see their arguments.
Gap Analysis | 4 rounds | 2026-04-03 | View Analysis
🧬 Theorist Proposes novel mechanisms and generates creative hypotheses

Based on my research, I'll now generate novel therapeutic hypotheses focused on aging-related gene expression changes that predict neurodegenerative vulnerability. Here are 6 evidence-based therapeutic hypotheses:

Novel Therapeutic Hypotheses for Aging-Neurodegeneration Vulnerability

1. AP1S1-Mediated Vesicular Transport Restoration

Description: Age-related downregulation of AP1S1 (adaptor protein complex 1 sigma 1) disrupts clathrin-mediated vesicular transport, creating vulnerability to amyloid-β and oxidative stress. Therapeutic restoration of AP1S1 function through small

🔍 Skeptic Identifies weaknesses, alternative explanations, and methodological concerns

Critical Evaluation of Therapeutic Hypotheses

I'll provide a rigorous critique of each hypothesis, identifying weaknesses and counter-evidence:

1. AP1S1-Mediated Vesicular Transport Restoration

Major Weaknesses:

  • Single pathway oversimplification: The hypothesis assumes AP1S1 is a primary driver when vesicular transport involves hundreds of proteins with redundant functions
  • Lack of specificity evidence: No evidence provided that AP1S1 downregulation is specific to vulnerable neurons vs. normal aging
  • Therapeutic feasibility unclear: No demonstration that AP1S1

🎯 Domain Expert Assesses practical feasibility, druggability, and clinical translation

Practical Feasibility Assessment of Therapeutic Hypotheses

Based on my analysis of druggability, existing compounds, competitive landscape, and development considerations, here's my comprehensive assessment:

1. AP1S1-Mediated Vesicular Transport Restoration

Druggability: POOR (2/10)

  • Target Type: Adaptor protein complex component - notoriously difficult to drug
  • Structure: No available crystal structure for rational drug design
  • Chemical Matter: No known small molecule modulators of AP1S1 function
  • Mechanism: Requires enhancing protein-protein interactio

Synthesizer Integrates perspectives and produces final ranked assessments

Based on my synthesis of the Theorist's hypotheses, Skeptic's critiques, and Expert's feasibility assessment, here's the final JSON output:

Price History

0.560.690.82 score_update: market_dynamics (2026-04-04T16:16)debate: market_dynamics (2026-04-04T16:22)score_update: market_dynamics (2026-04-04T16:58)score_update: market_dynamics (2026-04-04T17:09)evidence: market_dynamics (2026-04-04T17:41)evidence: market_dynamics (2026-04-04T21:13)debate: market_dynamics (2026-04-04T23:21)debate: market_dynamics (2026-04-04T23:22)evidence: market_dynamics (2026-04-05T02:16)evidence: evidence_update (2026-04-09T01:50)evidence: evidence_update (2026-04-09T01:50)evidence: evidence_batch_update (2026-04-13T02:18)evidence: evidence_batch_update (2026-04-13T02:18) 0.95 0.43 2026-04-042026-04-122026-04-23 Market PriceScoreevidencedebate 144 events
7d Trend
Falling
7d Momentum
▼ 11.5%
Volatility
Medium
0.0222
Events (7d)
7
⚡ Price Movement Log Recent 15 events
Event Price Change Source Time
📄 New Evidence $0.533 ▲ 2.4% evidence_batch_update 2026-04-13 02:18
📄 New Evidence $0.520 ▲ 4.9% evidence_batch_update 2026-04-13 02:18
Recalibrated $0.496 ▼ 1.1% 2026-04-10 15:58
Recalibrated $0.502 ▼ 6.6% 2026-04-10 15:53
📄 New Evidence $0.538 ▼ 5.6% evidence_update 2026-04-09 01:50
📄 New Evidence $0.569 ▲ 15.0% evidence_update 2026-04-09 01:50
Recalibrated $0.495 ▼ 23.6% 2026-04-08 18:39
📄 New Evidence $0.649 ▼ 3.7% market_dynamics 2026-04-05 02:16
💬 Debate Round $0.673 ▲ 48.5% market_dynamics 2026-04-04 23:22
💬 Debate Round $0.454 ▼ 28.3% market_dynamics 2026-04-04 23:21
📄 New Evidence $0.632 ▲ 22.1% market_dynamics 2026-04-04 21:13
📄 New Evidence $0.518 ▼ 25.3% market_dynamics 2026-04-04 17:41
📊 Score Update $0.693 ▼ 5.6% market_dynamics 2026-04-04 17:09
📊 Score Update $0.734 ▲ 48.5% market_dynamics 2026-04-04 16:58
Recalibrated $0.494 ▼ 46.9% 2026-04-04 16:38

Clinical Trials (0)

No clinical trials data available

📚 Cited Papers (16)

Neuroprotection of rapamycin in lactacystin-induced neurodegeneration via autophagy enhancement.
Neurobiology of disease (2009) · PMID:18640276
No extracted figures yet
Clearance of the mutant androgen receptor in motoneuronal models of spinal and bulbar muscular atrophy.
Neurobiology of aging (2014) · PMID:23810450
No extracted figures yet
Bortezomib-induced neuropathy: axonal membrane depolarization precedes development of neuropathy.
Clinical neurophysiology : official journal of the International Federation of Clinical Neurophysiology (2014) · PMID:23973385
No extracted figures yet
How autophagy can restore proteostasis defects in multiple diseases?
Medicinal research reviews (2021) · PMID:32043639
No extracted figures yet
LRSAM1 E3 ubiquitin ligase promotes proteasomal clearance of E6-AP protein.
Cellular signalling (2021) · PMID:33207262
No extracted figures yet
Amyloid toxicity in a Drosophila Alzheimer's model is ameliorated by autophagy activation.
Neurobiology of aging (2021) · PMID:34062489
No extracted figures yet
A Potential Mechanism for Targeting Aggregates With Proteasomes and Disaggregases in Liquid Droplets.
Frontiers in aging neuroscience (2022) · PMID:35517053
No extracted figures yet
Deciphering the Link Between ER<sup>UPR</sup> Signaling and MicroRNA in Pathogenesis of Alzheimer's Disease.
Frontiers in aging neuroscience (2022) · PMID:35615589
No extracted figures yet
The proteasome: A key modulator of nervous system function, brain aging, and neurodegenerative disease.
Frontiers in cell and developmental biology (2023) · PMID:37123415
No extracted figures yet
CHIP and aging: a key regulator of proteostasis and cellular senescence.
Biogerontology (2025) · PMID:40323531
No extracted figures yet
Proteostasis and autophagy disruption by the aging-related VGVAPG hexapeptide - preliminary insights into a potential novel elastin-induced neurodegeneration pathway in an in vitro human cellular neuron model.
Neurochemistry international (2025) · PMID:40348194
No extracted figures yet
Early proteasome downregulation and dysfunction drive proteostasis failure in Alzheimer's disease.
Brain : a journal of neurology (2025) · PMID:40488453
No extracted figures yet

📓 Linked Notebooks (1)

📓 Gene Expression Changes in Aging Mouse Brain Predicting Neurodegenerative Vulnerability
Real Forge-powered analysis: PubMed search, STRING PPI, Reactome pathways, gene annotations for aging mouse brain transcriptomics.
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⚔ Arena Performance

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KG Entities (162)

27-hydroxycholesterolABCA1ABCB1ACEACE enhancementACSL4ADAM10AKTAP1S1AP1S1 downregulationAPOEAPOE4APPAPP overexpressionBDNFC1QC1QAC3C4BCA1

Related Hypotheses

TREM2-Dependent Astrocyte-Microglia Cross-talk in Neurodegeneration
Score: 0.990 | neurodegeneration
TREM2-Dependent Microglial Senescence Transition
Score: 0.950 | neurodegeneration
PLCG2 Allosteric Modulation as a Precision Therapeutic for TREM2-Dependent Microglial Dysfunction
Score: 0.941 | neurodegeneration
Multi-Biomarker Composite Index Surpassing Amyloid PET for Treatment Response Prediction
Score: 0.933 | neurodegeneration
CYP46A1 Gene Therapy for Age-Related TREM2-Mediated Microglial Senescence Reversal
Score: 0.921 | neurodegeneration

Estimated Development

Estimated Cost
$45M
Timeline
5.5 years

🧪 Falsifiable Predictions (5)

5 total 0 confirmed 0 falsified
IF NAD+ precursor supplementation (e.g., nicotinamide riboside) is administered to aged C57BL/6 mice to restore cellular NAD+ levels and activate SIRT1 deacetylase activity, THEN PSMC2 deacetylation at lysine residues K195/K287 will increase, 26S proteasome assembly will increase by >30%, and degradation of fluorescently-labeled misfolded proteins in brain tissue will increase, using aged mouse model (18-22 months) with proteasome dysfunction.
pending conf: 0.50
Expected outcome: PSMC2 acetylation levels will decrease by >50%, 26S proteasome assembly will increase to >70% of young levels, and rates of proteasome-mediated degradation will increase by >40% in brain tissue
Falsified by: If NAD+ precursor supplementation does NOT restore PSMC2 deacetylation, does NOT increase 26S proteasome assembly, and does NOT improve misfolded protein clearance, the hypothesis is disproven; any result showing proteasome dysfunction persists despite restored NAD+ levels would invalidate the proposed mechanism
Method: Aged mice (18-22 months) will be treated with nicotinamide riboside (400 mg/kg/day) via drinking water for 8 weeks. PSMC2 acetylation status at K195/K287 will be measured by IP-western blot. 26S proteasome assembly will be quantified by native PAGE with in-gel proteasome activity assay. Misfolded protein clearance will be measured using UbG76V-GFP reporter mice crossed with aged mice.
IF a cysteine-reducing compound (e.g., N-acetylcysteine amide) is applied to cultured neurons from PSMC1-C522S knock-in mice to restore oxidized cysteine function in the Walker A/B motifs, THEN proteasome ATPase activity will increase to >80% of baseline levels, substrate degradation rates will increase by >50%, and cell viability under proteotoxic stress will improve, using PSMC1-C522S knock-in neuronal culture with age-associated oxidative damage.
pending conf: 0.50
Expected outcome: Proteasome ATPase activity will be restored to >80% of young neuronal levels, fluorescence-based proteasome activity assay will show >50% increase in chymotrypsin-like activity, and clearance of proteasome-targeted substrates will normalize
Falsified by: If cysteine-reducing therapy does NOT restore PSMC1 ATPase activity to >80% of baseline, does NOT increase proteasome-mediated degradation rates, and does NOT improve neuronal survival under proteotoxic stress, the hypothesis is disproven; any persistent proteasome dysfunction despite cysteine reduction would indicate the oxidized Walker motif residues are not the primary limiting factor in age-related proteasome decline
Method: Cortical neurons from PSMC1-C522S knock-in mice (expressing cysteine-null mutant that mimics reduced state) and WT controls will be treated with N-acetylcysteine amide (1 mM) for 48 hours. ATPase activity will be measured using colorimetric ATPase assay on immunoprecipitated 19S particles. Proteasome activity will be measured by Suc-LLVY-AMC hydrolysis. Misfolded protein clearance will be monitored by immunoblot for ubiquitinated protein accumulation.
IF early-life proteasome restoration therapy (PRT) is administered to middle-aged mice (12 months) targeting PSMC1 oxidation at Cys522 via cysteine-reactive compounds, THEN proteasome ATPase activity will be restored to ≥85% of young (3 month) baseline levels within 4 weeks of treatment initiation.
pending conf: 0.50
Expected outcome: Proteasome ATPase activity returns to ≥85% of young baseline; PSMC1 Cys522 oxidation reduced to <10% (mass spectrometry quantification); proteasome chymotrypsin-like activity restored to young levels
Falsified by: If ATPase activity remains <70% of young baseline after 4 weeks of treatment, OR if Cys522 oxidation levels remain >50% of aged untreated controls, the hypothesis is falsified. Also falsified if off-target effects on other PSMC subunits show >30% functional disruption.
Method: C57BL/6J mice treated with PSMC1 Cys522-targeted compound (e.g., Cys522-specific reducing agent or protected cysteine analog) via intracerebroventricular infusion for 4 weeks. Proteasome ATPase activity measured via ATP hydrolysis assay in isolated 26S particles. Mass spectrometry quantification of Cys522 oxidation using targeted SRM (selected reaction monitoring). Functional readouts include 20S chymotrypsin-like activity with fluorogenic substrate.
IF nicotinamide riboside (NR) supplementation is initiated at 18 months of age to restore NAD+ levels, THEN SIRT1-mediated deacetylation of PSMC2 at Lys195 and Lys287 will decrease to young-adult levels within 6 weeks, resulting in normalized 26S proteasome assembly and restored proteolytic capacity (≥90% of 6-month baseline).
pending conf: 0.50
Expected outcome: NAD+ levels in hippocampus and cortex return to young-adult concentrations (≥85%); PSMC2 acetylation at K195/K287 reduced to ≤15% above young baseline; 26S proteasome assembly (co-IP of PSMC2 with 20S core) increased ≥40% compared to age-matched untreated; proteasome peptidase activity restored to ≥90% of young levels
Falsified by: Hypothesis is falsified if PSMC2 acetylation levels remain >30% above young baseline despite NAD+ restoration, OR if 26S proteasome assembly fails to increase ≥30%, OR if proteolytic capacity does not recover above 75% of young baseline. Falsified if any compensatory upregulation of compensatory protein degradation pathways (autophagy) exceeds 50% of baseline, indicating non-specific effect.
Method: C57BL/6J mice supplemented with NR (400mg/kg/day) in drinking water from 18 months. NAD+ measured via LC-MS/MS in hippocampal and cortical tissue. PSMC2 acetylation status quantified via IP-western with site-specific antibodies against K195ac and K287ac. 26S proteasome assembly assessed via co-immunoprecipitation of PSMC2 with PSMD1 (19S) and PSMB5 (20S core). Proteasome activity measured usingSuc-LLVY-AMC hydrolysis. Autophagy flux measured via p62 degradation and LC3-II turnover as selectivity
IF early proteasome restoration therapy targeting PSMC1 Cys522 and PSMC5 Cys181 oxidative damage is administered to aged subjects within 6 months of first detectable PSMC dysfunction, THEN ATPase activity should be restored to ≥80% of young baseline levels within 4 weeks of intervention.
pending conf: 0.50
Expected outcome: ATPase activity recovery to ≥80% of young levels in isolated 19S regulatory particles, with corresponding restoration of substrate degradation rates to normal physiological parameters.
Falsified by: If ATPase activity remains below 70% of young baseline despite maximum tolerated intervention dose, or if activity improvement is not sustained beyond 8 weeks post-treatment, the oxidative damage repair hypothesis is falsified.
Method: Administer targeted antioxidant therapy (Cys-specific reducing agents or PSMC1/PSMC5 gene therapy) to aged rodent models. Isolate 19S particles via affinity purification at 2-week intervals. Perform ATPase activity assays using radiolabeled ATP hydrolysis measurement and proteasome peptidase activity assays. Compare to age-matched untreated controls and young cohort.

Knowledge Subgraph (200 edges)

activates (2)

agingCGASaged_exosomesTNFRSF25

associated with (14)

TFEBneurodegenerationMOGneurodegenerationC4BneurodegenerationACEneurodegenerationCD300Fneurodegeneration
▸ Show 9 more
CDKN2AneurodegenerationGAL3ST1neurodegenerationAP1S1neurodegenerationCGAS, STING1neurodegenerationCell-type specific vulnerability markersneurodegenerationMitochondrial respiratory complexes and inflammatory cytokine receptorsneurodegenerationNOMO1neurodegenerationPSMCneurodegenerationTNFRSF25neurodegeneration

catalyzes (1)

GAL3ST1sulfatide_synthesis

causes (27-hydroxycholesterol promotes oligodendrocyte mat) (1)

27-hydroxycholesterololigodendrocyte maturation

causes (APP overexpression causes selective vulnerability ) (1)

APP overexpressioncholinergic system vulnerability

causes (CXCL10 acts as chemokine to recruit cytotoxic CD8+) (1)

CXCL10CD8+ T cell recruitment

causes (CXCL10 antagonists would preserve white matter int) (1)

CXCL10 inhibitionwhite matter preservation

causes (NAD+ supplementation improves mitophagy and mitoch) (1)

NAD+ supplementationmitophagy enhancement

causes (NOMO1 function improves endoplasmic reticulum home) (1)

NOMO1 enhancementER homeostasis

causes (STING activation leads to cellular senescence and ) (1)

STING pathway activationcellular senescence

causes (activated TNFRSF25 accelerates cognitive decline i) (1)

TNFRSF25 activationcognitive decline acceleration

causes (age-related CD300f dysfunction allows excessive ne) (1)

CD300f dysfunctionneuroinflammation

causes (age-related activation of cGAS-STING drives microg) (1)

cGAS-STING pathway activationmicroglial senescence

causes (age-related cytokine secretion specifically suppre) (1)

cytokine secretionmitochondrial metabolism suppression

causes (age-related decline in microglial profilin-1 disru) (1)

profilin-1 declinecytoskeletal checkpoint disruption

causes (age-related downregulation of AP1S1 disrupts clath) (1)

AP1S1 downregulationclathrin-mediated vesicular transport disruption

causes (aged brain exosomes specifically activate neuronal) (1)

brain-derived exosomes from aged miceneuronal TNFRSF25 activation

causes (aging activation of microglia leads to increased C) (1)

aging-activated microgliaCXCL10 production

causes (aging causes early transcriptomic changes in oligo) (1)

agingoligodendrocyte dysfunction

causes (aging mitochondrial dysfunction triggers STING pat) (1)

mitochondrial dysfunctionSTING pathway activation

causes (creates a feed-forward loop of neuroinflammation l) (1)

microglial senescenceneurodegeneration vulnerability

causes (disrupted cytoskeletal checkpoints lead to prematu) (1)

cytoskeletal checkpoint disruptionpremature synaptic pruning

causes (disrupted endosomal-lysosomal trafficking creates ) (1)

vesicular transport disruptionneurodegeneration vulnerability

causes (dysregulated microglial transitions fail to suppor) (1)

dysregulated microglial transitionsimpaired remyelination

causes (early proteasome downregulation and dysfunction dr) (1)

proteasome dysfunctionproteostasis failure

causes (enhanced ACE expression in microglia increases Aβ ) (1)

ACE enhancementamyloid-β clearance

causes (iron-dependent ferroptosis contributes to α-synucl) (1)

ferroptosisα-synuclein neuronal death

causes (loss of sulfatides removes suppression of microgli) (1)

myelin sulfatide deficiencymicroglial activation

causes (microglia activate CXCL10-mediated recruitment of ) (1)

microglial CXCL10 productionCD8+ T cell recruitment

causes (microglial ACE enhancement activates spleen tyrosi) (1)

ACE enhancementspleen tyrosine kinase signaling

causes (microglial activation orchestrates CXCL10-mediated) (1)

microglial activationCXCL10 production

causes (proteostasis failure leads to protein aggregation ) (1)

proteostasis failureneurodegeneration

causes (recruited CD8+ T cells promote aging-related white) (1)

CD8+ T cell recruitmentwhite matter degeneration

causes (recruited CD8+ T cells promote white matter degene) (1)

CD8+ T cell recruitmentoligodendrocyte damage

causes (selective CXCR3 blockade could preserve white matt) (1)

CXCR3 blockadewhite matter preservation

causes (senescence creates a self-perpetuating cycle by pr) (1)

cellular senescencetau aggregation

causes (suppressed mitochondrial function creates vulnerab) (1)

mitochondrial metabolism suppressionenergy stress vulnerability

causes (tau aggregation triggers cellular senescence respo) (1)

tau aggregationcellular senescence

co associated with (52)

ACEGPX4ACECXCL10ACEAPPAPPGPX4APPCXCL10
▸ Show 47 more
CD300FGAL3ST1CD300FTREM2CDKN2ACXCL10CDKN2ASTING1CD300FCDKN2ACDKN2AGAL3ST1CDKN2ATREM2CXCL10STING1CD300FCXCL10CXCL10GAL3ST1CXCL10TREM2CXCL10PFN1GAL3ST1TREM2CXCL10GPX4CD300FSTING1GAL3ST1STING1STING1TREM2C4BCA1ACEPSMCACENOMO1AP1S1TNFRSF25AP1S1Mitochondrial respiratory complexes and inflammatory cytokine receptorsAP1S1CGAS, STING1AP1S1CXCL10AP1S1PFN1APPPSMCAPPNOMO1CGAS, STING1CXCL10CGAS, STING1PFN1CXCL10PSMCCXCL10NOMO1AP1S1Cell-type specific vulnerability markersCell-type specific vulnerability markersTNFRSF25Cell-type specific vulnerability markersMitochondrial respiratory complexes and inflammatory cytokine receptorsCGAS, STING1Cell-type specific vulnerability markersCXCL10Cell-type specific vulnerability markersCell-type specific vulnerability markersPFN1GPX4PSMCGPX4NOMO1CGAS, STING1Mitochondrial respiratory complexes and inflammatory cytokine receptorsCXCL10Mitochondrial respiratory complexes and inflammatory cytokine receptorsMitochondrial respiratory complexes and inflammatory cytokine receptorsPFN1NOMO1PSMCMitochondrial respiratory complexes and inflammatory cytokine receptorsTNFRSF25CGAS, STING1TNFRSF25CXCL10TNFRSF25PFN1TNFRSF25

co discussed (43)

TREM2LAMP1TREM2NLGN1C3C1QAC3LAMP1C3NLGN1
▸ Show 38 more
C3ACSL4C1QALAMP1C1QANLGN1C1QAACSL4LAMP1NLGN1LAMP1ACSL4NLGN1ACSL4ACSL4MOGACSL4LAMP1ACSL4C1QAACSL4NLGN1ACSL4TFEBACSL4C3MOGLAMP1MOGC1QAMOGNLGN1MOGTFEBMOGTREM2MOGC3LAMP1C1QALAMP1TREM2LAMP1C3C1QATFEBC1QAC3NLGN1TFEBNLGN1TREM2NLGN1C3TFEBC3NLGN1LAMP1NLGN1C1QANLGN1MOGTREM2MOGLAMP1MOGC3TFEBC3MOGTFEBC1QATFEBMOGC1QAMOG

codes for ligand (1)

CXCL10CXCR3

codes for subunit (1)

PSMCproteasome_complex

contributes to (1)

ferroptosissynucleinopathy

controls (1)

PFN1cytoskeletal_checkpoints

damages (1)

CD8_T_cellsoligodendrocytes

downregulates (2)

agingAP1S1agingPFN1

enhances (1)

ACEamyloid_clearance

implicated in (11)

C4Bneurodegenerationh-2c776894neurodegenerationh-9588dd18neurodegenerationh-724e3929neurodegenerationh-0d576989neurodegeneration
▸ Show 6 more
h-9a721223neurodegenerationh-1e28311bneurodegenerationh-e003a35eneurodegenerationh-d9604ebfneurodegenerationh-245c3e93neurodegenerationh-3da804f5neurodegeneration

increases (1)

agingcytokine_secretion

induces (1)

CDKN2Acellular_senescence

inhibits (1)

CD300Finflammaging

involved in (1)

C4Bclassical_complement_cascade

ligand receptor (1)

CXCL10CXCR3

maintains (1)

proteasome_complexproteostasis

mediates (1)

APPcholinergic_vulnerability

modulates (1)

STING1NAD_metabolism

participates in (1)

C4BClassical complement cascade

prevents (2)

vesicular_transportneurodegenerationcytoskeletal_checkpointsmicroglial_senescence

promotes (3)

CXCL10white_matter_degenerationSTING1microglial_senescenceTNFRSF25cognitive_decline

recruits (1)

CXCL10CD8_T_cells

regulates (3)

TREM2microglial_activationNOMO1ER_homeostasisAP1S1vesicular_transport

signals to (1)

CGASSTING1

suppresses (1)

cytokine_secretionmitochondrial_metabolism

targets (13)

h-a8165b3bC1QAh-2f43b42fC4Bh-2c776894GPX4h-9588dd18PSMCh-724e3929CXCL10
▸ Show 8 more
h-0d576989APPh-9a721223NOMO1h-1e28311bACEh-e003a35eTREM2h-d9604ebfGAL3ST1h-245c3e93CXCL10h-3da804f5STING1h-08a79bc5CDKN2A

upregulates (1)

agingCXCL10

Mechanism Pathway for PSMC

Molecular pathway showing key causal relationships underlying this hypothesis

graph TD
    h_9588dd18["h-9588dd18"] -->|targets| PSMC["PSMC"]
    PSMC_1["PSMC"] -->|codes for subunit| proteasome_complex["proteasome_complex"]
    PSMC_2["PSMC"] -->|associated with| neurodegeneration["neurodegeneration"]
    ACE["ACE"] -->|co associated with| PSMC_3["PSMC"]
    APP["APP"] -->|co associated with| PSMC_4["PSMC"]
    CXCL10["CXCL10"] -->|co associated with| PSMC_5["PSMC"]
    GPX4["GPX4"] -->|co associated with| PSMC_6["PSMC"]
    NOMO1["NOMO1"] -->|co associated with| PSMC_7["PSMC"]
    style h_9588dd18 fill:#4fc3f7,stroke:#333,color:#000
    style PSMC fill:#ce93d8,stroke:#333,color:#000
    style PSMC_1 fill:#ce93d8,stroke:#333,color:#000
    style proteasome_complex fill:#4fc3f7,stroke:#333,color:#000
    style PSMC_2 fill:#ce93d8,stroke:#333,color:#000
    style neurodegeneration fill:#ef5350,stroke:#333,color:#000
    style ACE fill:#ce93d8,stroke:#333,color:#000
    style PSMC_3 fill:#ce93d8,stroke:#333,color:#000
    style APP fill:#ce93d8,stroke:#333,color:#000
    style PSMC_4 fill:#ce93d8,stroke:#333,color:#000
    style CXCL10 fill:#ce93d8,stroke:#333,color:#000
    style PSMC_5 fill:#ce93d8,stroke:#333,color:#000
    style GPX4 fill:#ce93d8,stroke:#333,color:#000
    style PSMC_6 fill:#ce93d8,stroke:#333,color:#000
    style NOMO1 fill:#ce93d8,stroke:#333,color:#000
    style PSMC_7 fill:#ce93d8,stroke:#333,color:#000

3D Protein Structure

🧬 PSMC — Search for structure Click to search RCSB PDB
🔍 Searching RCSB PDB for PSMC structures...
Querying Protein Data Bank API

Source Analysis

Gene expression changes in aging mouse brain predicting neurodegenerative vulnerability

neurodegeneration | 2026-04-03 | completed

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