biomarker 1,913 words KG: VIMENTIN
Contents

Vimentin - Biomarker

🔬 Protein Info
Gene SymbolVIMENTIN
Chromosome10p13
Protein FamilyType III intermediate filament protein
Functionis a type III intermediate filament protein encoded by the VIM gene.
Primary Expressionmesenchymal cells, fibroblasts, and astrocytes in the central nervous system
Subcellular LocalizationCytoplasm, intermediate filaments
Molecular Weight57 kDa
Amino Acids466 aa
PathwaysAutophagy, NOTCH_SIGNALING, Notch Signal Sending, Notch Signaling, Proteasome
UniProt IDP08670
GeneCardsVIMENTIN
Human Protein AtlasVIMENTIN
Central α-helical rod domainResponsible for dimerization and filament assembly PMID: 2847424
N-terminal head domainRegulates filament assembly and interaction with signaling molecules PMID: 21855637
C-terminal tail domainMediates interactions with other cytoskeletal elements and organelles PMID: 8898344
Associated DiseasesGlioblastoma, Ms, Tumor
Known Drugs/Compoundscolumbianadin
InteractionsACTB, Actin, Akt, AKT, ALPHA-SYNUCLEIN, AND
KG Connections318 knowledge graph edges
DatabasesGeneCardsNCBI GeneHPASTRING

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🌐 Cross-references

Wikipedia

Related Hypotheses (25)

Hippocampal CA3-CA1 circuit rescue via neurogenesis and syna
Score: 0.82
Selective APOE4 Degradation via Proteolysis Targeting Chimer
Score: 0.79
Competitive APOE4 Domain Stabilization Peptides
Score: 0.78
APOE4 Allosteric Rescue via Small Molecule Chaperones
Score: 0.76
Cell-Type Specific TREM2 Upregulation in DAM Microglia
Score: 0.76
Targeted APOE4-to-APOE3 Base Editing Therapy
Score: 0.76
Multi-Modal Stress Response Harmonization
Score: 0.76
GFAP-Positive Reactive Astrocyte Subtype Delineation
Score: 0.75
APOE Isoform Expression Across Glial Subtypes
Score: 0.74
APOE4-Selective Lipid Nanoemulsion Therapy
Score: 0.74
APOE-TREM2 Interaction Modulation
Score: 0.74
Interfacial Lipid Mimetics to Disrupt Domain Interaction
Score: 0.72
Astroglial Gap Junction Coordination via Connexin-43 Phospho
Score: 0.72
APOE Isoform Conversion Therapy
Score: 0.72
Membrane Cholesterol Gradient Modulators
Score: 0.71
Mechanosensitive Ion Channel Reprogramming
Score: 0.70
Lysosomal Positioning Dynamics Modulation
Score: 0.69
CX43 hemichannel engineering enables size-selective mitochon
Score: 0.69
TREM2 Conformational Stabilizers for Synaptic Discrimination
Score: 0.69
Complement C1q Subtype Switching
Score: 0.66
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Related Analyses (12)

4R-tau strain-specific spreading patterns in PSP vs CBD
neurodegeneration · archived
Mitochondrial transfer between astrocytes and neurons
neurodegeneration · archived
Astrocyte reactivity subtypes in neurodegeneration
neurodegeneration · archived
APOE4 structural biology and therapeutic targeting strategie
neurodegeneration · archived
Autophagy-lysosome pathway convergence across neurodegenerat
neurodegeneration · archived

Related Experiments (4)

ER-Golgi Secretory Pathway Dysfunction in PD - Experiment De
clinical · proposed · Score: 0.40
Macroautophagy Dysfunction in PD - Experiment Design
clinical · proposed · Score: 0.40
iPSC-NPC effects on astrocytes in vitro ICH model
exploratory · completed · Score: 0.90
Blood Biomarker vs Tau PET for Treatment Monitoring
clinical · proposed · Score: 0.40

See Also (12)

Astrocytes
cell · KG edge: inhibits
Apoptosis in Neurodegeneration
entity · KG edge: associated_with
Amyloid-Related Imaging Abnormalities (ARIA)
entity · KG edge: biomarker_for
Astrocytes
entity · KG edge: inhibits
astrocyte-neuron-metabolic-coupling-parkinsons
general · KG edge: inhibits

Knowledge Graph (12 edges)

VIMENTIN regulates NOTCH_SIGNALING
TUBULIN associated_with VIMENTIN
P62 associated_with VIMENTIN
MAP3K5 associated_with VIMENTIN
UBIQUITIN associated_with VIMENTIN
OCLN associated_with VIMENTIN
GJA1 regulates VIMENTIN
SQSTM1 associated_with VIMENTIN
CASP3 regulates VIMENTIN
GAPDH regulates VIMENTIN

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