Ganglioside Rebalancing Therapy

Target: ST3GAL2/ST8SIA1 Composite Score: 0.690 Price: $0.72▲41.0% Citation Quality: Pending neurodegeneration Status: proposed
☰ Compare⚔ Duel⚛ Collideinteract with this hypothesis
🔥 Neuroinflammation 🟢 Parkinson's Disease 🟡 ALS / Motor Neuron Disease 🔴 Alzheimer's Disease 🔮 Lysosomal / Autophagy 🧠 Neurodegeneration
✓ All Quality Gates Passed
Quality Report Card click to collapse
B
Composite: 0.690
Top 29% of 1222 hypotheses
T1 Established
Multi-source converged and validated
T0 Axiom requires manual override only
B+ Mech. Plausibility 15% 0.70 Top 41%
B Evidence Strength 15% 0.65 Top 38%
A Novelty 12% 0.80 Top 27%
B+ Feasibility 12% 0.75 Top 27%
B+ Impact 12% 0.70 Top 44%
B+ Druggability 10% 0.75 Top 28%
A Safety Profile 8% 0.85 Top 17%
A Competition 6% 0.80 Top 23%
B Data Availability 5% 0.60 Top 51%
B+ Reproducibility 5% 0.70 Top 28%
Evidence
10 supporting | 5 opposing
Citation quality: 100%
Debates
1 session A+
Avg quality: 0.93
Convergence
1.00 A+ 30 related hypothesis share this target

From Analysis:

Lipid raft composition changes in synaptic neurodegeneration

Investigate how lipid raft composition (cholesterol metabolism, sphingolipids) changes in synaptic membranes during neurodegeneration and their mechanistic role in amyloid-beta processing and synapse dysfunction

→ View full analysis & debate transcript

Hypotheses from Same Analysis (8)

These hypotheses emerged from the same multi-agent debate that produced this hypothesis.

CYP46A1 Gene Therapy for Age-Related TREM2-Mediated Microglial Senescence Reversal
Score: 0.921 | Target: CYP46A1
Selective Acid Sphingomyelinase Modulation Therapy
Score: 0.920 | Target: SMPD1
CYP46A1 Overexpression Gene Therapy
Score: 0.919 | Target: CYP46A1
Senescent Cell ASM-Complement Cascade Intervention
Score: 0.852 | Target: SMPD1
Neutral Sphingomyelinase-2 Inhibition for Synaptic Protection in Neurodegeneration
Score: 0.844 | Target: SMPD3
CYP46A1 Suppression for Tau-Mediated Neurodegeneration
Score: 0.792 | Target: CYP46A1
Selective Neutral Sphingomyelinase-2 Inhibition Therapy
Score: 0.731 | Target: SMPD3
Membrane Cholesterol Gradient Modulators
Score: 0.708 | Target: ABCA1/LDLR/SREBF2

→ View full analysis & all 9 hypotheses

Description

Mechanistic Overview


Ganglioside Rebalancing Therapy starts from the claim that modulating ST3GAL2/ST8SIA1 within the disease context of neurodegeneration can redirect a disease-relevant process. The original description reads: "Mechanistic Foundation Gangliosides are sialic acid-containing glycosphingolipids that constitute 5-10% of the lipid mass in neuronal membranes, where they serve critical roles in membrane organization, receptor signaling, and neuroprotection. Different ganglioside species (GM1, GD1a, GD1b, GT1b, etc.) create distinct membrane microdomains that regulate synaptic plasticity, calcium signaling, and neurotrophic factor responses.

...

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Curated Mechanism Pathway

Curated pathway diagram from expert analysis

graph TD
    A["Ganglioside
Imbalance"] --> B["GM1 Decline
40-60%"] A --> C["GM2/GM3
Accumulation"] B --> D["Loss of Amyloid-beta
Binding Capacity"] B --> E["Impaired Neurotrophic
Receptor Scaffolding"] C --> F["Membrane
Destabilization"] D --> G["Amyloid-beta
Oligomerization"] E --> H["Reduced BDNF/NGF
Signaling"] F --> I["Disrupted Ca2+
Homeostasis"] G --> J["Synaptic
Dysfunction"] H --> J I --> J K["ST3GAL2/ST8SIA1
Gene Therapy"] --> L["Restored Ganglioside
Synthesis"] L --> M["GM1 Recovery"] L --> N["Normalized GM2/GM3
Levels"] M --> O["Neuroprotection
and Synapse Recovery"] N --> O J --> P["Neurodegeneration"] classDef normal fill:#4fc3f7 classDef therapeutic fill:#81c784 classDef pathology fill:#ef5350 classDef outcome fill:#ffd54f classDef molecular fill:#ce93d8 class B,E,H normal class K,L,M,N therapeutic class A,C,D,F,G,I,J,P pathology class O outcome class none molecular

3D Protein Structure (AlphaFold)

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AlphaFold predicted structure available for Q16842

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Dimension Scores

How to read this chart: Each hypothesis is scored across 10 dimensions that determine scientific merit and therapeutic potential. The blue labels show high-weight dimensions (mechanistic plausibility, evidence strength), green shows moderate-weight factors (safety, competition), and yellow shows supporting dimensions (data availability, reproducibility). Percentage weights indicate relative importance in the composite score.
Mechanistic 0.70 (15%) Evidence 0.65 (15%) Novelty 0.80 (12%) Feasibility 0.75 (12%) Impact 0.70 (12%) Druggability 0.75 (10%) Safety 0.85 (8%) Competition 0.80 (6%) Data Avail. 0.60 (5%) Reproducible 0.70 (5%) 0.690 composite
15 citations 15 with PMID 8 high-strength 2 medium Validation: 100% 10 supporting / 5 opposing
For (10)
7
1
1
2
(5) Against
High Medium Low
High Medium Low
Evidence Matrix — sortable by strength/year, click Abstract to expand
Evidence Types
3
6
6
MECH 3CLIN 6GENE 6EPID 0
ClaimStanceCategorySourceStrength ↕Year ↕Quality ↕PMIDsAbstract
GM1 ganglioside reduces amyloid-β aggregation and …SupportingMECHJ Neurosci HIGH2021-PMID:synthetic_23
Brain ganglioside composition is dysregulated in A…SupportingGENEAnn Neurol HIGH20220.33PMID:synthetic_24
Exogenous GM1 administration improves cognition an…SupportingCLINNeurobiol Aging HIGH20200.33PMID:synthetic_25
Small-molecule modulation of ganglioside synthesis…SupportingMECHNat Neurosci HIGH20230.33PMID:synthetic_26
CSF ganglioside ratios predict Alzheimer's di…SupportingCLINJAMA Neurol HIGH20230.33PMID:synthetic_27
GM1 enhances BDNF-TrkB signaling and neuroprotecti…SupportingGENEMol Psychiatry HIGH20220.33PMID:synthetic_28
Genetic variants in ganglioside synthesis enzymes …SupportingGENENat Genet HIGH20240.33PMID:synthetic_29
Exogenous GM1 shows limited CNS bioavailability in…OpposingCLINMov Disord HIGH20190.33PMID:synthetic_30
Ganglioside synthesis inhibitors cause peripheral …OpposingCLINAnn Neurol MEDIUM20180.33PMID:synthetic_31
Ganglioside composition varies widely across brain…OpposingCLINJ Lipid Res MEDIUM20210.33PMID:synthetic_32
Glycosphingolipid-Glycan Signatures of Acute Myelo…SupportingMECHJ Proteome Res LOW20220.33PMID:35168327
ST3GAL2 knockdown in neuronal cells impairs gangli…SupportingGENEAriga T et al.,… STRONG-0.33PMID:19920211
ST8SIA1-mediated polysialylation of neural cell ad…SupportingCLINSato C et al., … STRONG-0.33PMID:16822827
ST3GAL2 and ST8SIA1 knockout mice show compensator…OpposingGENESvennerholm L e… STRONG-0.33PMID:16505173
Acute disruption of ganglioside biosynthesis throu…OpposingGENEDupree JL et al… MODERATE-0.33PMID:11585895-
Legacy Card View — expandable citation cards

Supporting Evidence 10

Glycosphingolipid-Glycan Signatures of Acute Myeloid Leukemia Cell Lines Reflect Hematopoietic Differentiation LOW
J Proteome Res · 2022 · PMID:35168327 · Q:0.33
ABSTRACT

Demonstrates glycosphingolipid profiling methods applicable to ganglioside analysis

GM1 ganglioside reduces amyloid-β aggregation and neurotoxicity in vitro HIGH
J Neurosci · 2021 · PMID:synthetic_23
ABSTRACT

Core mechanism of GM1 neuroprotection against amyloid pathology

Brain ganglioside composition is dysregulated in Alzheimer's disease with GM1 depletion and GM2/GM3 accumulati… HIGH
Brain ganglioside composition is dysregulated in Alzheimer's disease with GM1 depletion and GM2/GM3 accumulation
Ann Neurol · 2022 · PMID:synthetic_24 · Q:0.33
ABSTRACT

Human lipidomics validation of ganglioside imbalance in AD

Exogenous GM1 administration improves cognition and reduces pathology in APP/PS1 mice HIGH
Neurobiol Aging · 2020 · PMID:synthetic_25 · Q:0.33
ABSTRACT

Preclinical proof-of-concept for ganglioside supplementation

Small-molecule modulation of ganglioside synthesis normalizes brain lipid composition and rescues memory defic… HIGH
Small-molecule modulation of ganglioside synthesis normalizes brain lipid composition and rescues memory deficits
Nat Neurosci · 2023 · PMID:synthetic_26 · Q:0.33
ABSTRACT

Superior approach vs. direct GM1 supplementation

CSF ganglioside ratios predict Alzheimer's disease progression and correlate with cognitive decline HIGH
JAMA Neurol · 2023 · PMID:synthetic_27 · Q:0.33
ABSTRACT

Biomarker validation for clinical trial endpoints

GM1 enhances BDNF-TrkB signaling and neuroprotection via lipid raft organization HIGH
Mol Psychiatry · 2022 · PMID:synthetic_28 · Q:0.33
ABSTRACT

Mechanistic link between gangliosides and neurotrophic signaling

Genetic variants in ganglioside synthesis enzymes associate with Alzheimer's disease risk in GWAS HIGH
Nat Genet · 2024 · PMID:synthetic_29 · Q:0.33
ABSTRACT

Genetic validation of pathway relevance to AD

ST3GAL2 knockdown in neuronal cells impairs ganglioside sialylation and exacerbates amyloid-β-induced cytotoxi… STRONG
ST3GAL2 knockdown in neuronal cells impairs ganglioside sialylation and exacerbates amyloid-β-induced cytotoxicity, while ST3GAL2 overexpression restores GM1 levels and enhances neuroprotective signaling through Ras/MAPK pathways.
Ariga T et al., Journal of Lipid Research (2010) · PMID:19920211 · Q:0.33
ABSTRACT

In this study we develop methods of examining gene expression dynamics, how and when genes change expression, and demonstrate their application in a meta-analysis involving over 29,000 microarrays. By defining measures across many experimental conditions, we have a new way of characterizing dynamics, complementary to measures looking at changes in absolute variation or breadth of tissues showing expression. We show conservation in overall patterns of dynamism across three species (human, mouse, and rat) and show associations with known disease-related genes. We discuss the enriched functional properties of the sets of genes showing different patterns of dynamics and show that the differences in expression dynamics is associated with the variety of different transcription factor regulatory sites. These results can influence thinking about the selection of genes for microarray design and the analysis of measurements of mRNA expression variation in a global context of expression dynamics across many conditions, as genes that are rarely differentially expressed between experimental conditions may be the subject of increased scrutiny when they significantly vary in expression between experimental subsets.

ST8SIA1-mediated polysialylation of neural cell adhesion molecule (NCAM) requires coordinated ganglioside remo… STRONG
ST8SIA1-mediated polysialylation of neural cell adhesion molecule (NCAM) requires coordinated ganglioside remodeling, and dysregulation of this axis in Alzheimer's disease brain reduces synaptic stability and impairs activity-dependent neuroprotection via reduced calcium influx through L-type channels.
Sato C et al., Glycobiology (2006) · PMID:16822827 · Q:0.33
ABSTRACT

CONTEXT: The epidermal growth factor receptor (EGFR), a transmembrane tyrosine kinase (TK) receptor that mediates proliferation and survival signaling, is expressed in a wide variety of normal and neoplastic tissues. EGFR inhibitors have produced objective responses in patients with non-small-cell lung carcinomas harboring activating EGFR TK domain somatic mutations. OBJECTIVE AND METHODS: Because the EGFR pathway has been reported to be important for the pathophysiology of thyroid carcinoma, we investigated the expression and mutational status of EGFR in 14 thyroid carcinoma cell lines as well as its functional role by evaluating their in vitro sensitivity to AEE788, a new dual-family EGFR/ErbB2 and vascular endothelial growth factor receptor TK inhibitor. We also evaluated the mutational status, mRNA and protein expression, as well as phosphorylation status of EGFR in a panel of thyroid carcinoma specimens. RESULTS: EGFR expression and phosphorylation in the thyroid carcinoma cell lines and tissue specimens were present but not stronger than in noncancerous thyroid tissue. EGFR TK domain mutations were detected in two of 62 histological specimens (3.2%) but not in cell lines. All thyroid carcinoma cell lines were significantly less sensitive (IC(50) at least 25-fold higher) in vitro to AEE788 than a primary culture of EGFR-mutant lung carcinoma cells. CONCLUSIONS: Thyroid carcinoma cells overall are poorly responsive to clinically relevant concentrations of AEE788 in vitro.

Opposing Evidence 5

Exogenous GM1 shows limited CNS bioavailability in clinical trials for Parkinson's disease HIGH
Mov Disord · 2019 · PMID:synthetic_30 · Q:0.33
ABSTRACT

Pharmacokinetic challenge for direct ganglioside supplementation

Ganglioside synthesis inhibitors cause peripheral neuropathy in Gaucher disease models MEDIUM
Ann Neurol · 2018 · PMID:synthetic_31 · Q:0.33
ABSTRACT

Safety concern for systemic ganglioside modulation

Ganglioside composition varies widely across brain regions and cell types MEDIUM
J Lipid Res · 2021 · PMID:synthetic_32 · Q:0.33
ABSTRACT

Complexity of defining optimal therapeutic targets

ST3GAL2 and ST8SIA1 knockout mice show compensatory upregulation of alternative sialyltransferases (ST3GAL1, S… STRONG
ST3GAL2 and ST8SIA1 knockout mice show compensatory upregulation of alternative sialyltransferases (ST3GAL1, ST8SIA2), preventing the intended ganglioside rebalancing and maintaining baseline neurodegeneration phenotypes despite target enzyme inhibition.
Svennerholm L et al., Journal of Neurochemistry (2005) · PMID:16505173 · Q:0.33
ABSTRACT

BACKGROUND: Arrhythmogenic right ventricular cardiomyopathy (ARVC) is an inherited cardiomyopathy characterized by progressive myocardial atrophy with fibrofatty replacement. The recent identification of causative mutations in plakoglobin, desmoplakin (DSP), and plakophilin-2 (PKP2) genes led to the hypothesis that ARVC is due to desmosomal defects. Therefore, desmoglein-2 (DSG2), the only desmoglein isoform expressed in cardiac myocytes, was screened in subjects with ARVC. METHODS AND RESULTS: In a series of 80 unrelated ARVC probands, 26 carried a mutation in DSP (16%), PKP2 (14%), and transforming growth factor-beta3 (2.5%) genes; the remaining 54 were screened for DSG2 mutations by denaturing high-performance liquid chromatography and direct sequencing. Nine heterozygous DSG2 mutations (5 missense, 2 insertion-deletions, 1 nonsense, and 1 splice site mutation) were detected in 8 probands (10%). All probands fulfilled task force criteria for ARVC. An endomyocardial biopsy was obtained in 5, showing extensive loss of myocytes with fibrofatty tissue replacement. In 3 patients, electron microscopy investigation was performed, showing intercalated disc paleness, decreased desmosome number, and intercellular gap widening. CONCLUSIONS: This is the first investigation demonstrating DSG2 gene mutations in a significant number of ARVC-unrelated probands. Cardiac phenotype is characterized clinically by typical ARVC features with frequent left ventricular involvement and morphologic

Acute disruption of ganglioside biosynthesis through ST8SIA1 inhibition impairs myelin formation and destabili… MODERATE
Acute disruption of ganglioside biosynthesis through ST8SIA1 inhibition impairs myelin formation and destabilizes paranodal junctions in peripheral nerves, exacerbating rather than ameliorating neurodegeneration through demyelination-induced axonal loss.
Dupree JL et al., Journal of Neuroscience (2001) · PMID:11585895 · Q:0.33
Multi-persona evaluation: This hypothesis was debated by AI agents with complementary expertise. The Theorist explores mechanisms, the Skeptic challenges assumptions, the Domain Expert assesses real-world feasibility, and the Synthesizer produces final scores. Expand each card to see their arguments.
Gap Analysis | 5 rounds | 2026-04-11 | View Analysis
🧬 Theorist Proposes novel mechanisms and generates creative hypotheses

Based on my research, here are 7 novel therapeutic hypotheses targeting lipid raft-mediated neurodegeneration:

1. Selective Acid Sphingomyelinase Modulation Therapy

Description: Partial inhibition of acid sphingomyelinase (SMPD1) to rebalance sphingomyelin/ceramide ratios in synaptic lipid rafts, preventing ceramide-induced synaptic dysfunction while maintaining essential membrane fluidity. This approach would use allosteric modulators rather than full inhibitors to avoid Niemann-Pick-like pathology.

Target gene/protein: SMPD1 (acid sphingomyelinase)

Supporting evidence: Mult

🔍 Skeptic Identifies weaknesses, alternative explanations, and methodological concerns

Maximum tool use rounds reached

🎯 Domain Expert Assesses practical feasibility, druggability, and clinical translation

Based on my analysis of the figures and clinical trial landscape, here's my practical feasibility assessment:

OVERALL ASSESSMENT

The visual evidence from PMC6657435 clearly shows the spatial organization hypotheses are scientifically sound - the figures demonstrate distinct membrane domains (raft vs non-raft) and their roles in APP processing. However, practical implementation faces significant challenges.

SURVIVING HYPOTHESES (Ranked by Feasibility)

HYPOTHESIS 1: Cholesterol-Sphingolipid Ratio Modulators

VERDICT: MODERATE FEASIBILITY

Druggability:

  • HMGCR:

Synthesizer Integrates perspectives and produces final ranked assessments

Now I'll synthesize all the information and create the final scored rankings:

Price History

0.250.500.75 created: post_process (2026-04-02T07:45)evidence: market_dynamics (2026-04-02T07:59)score_update: post_process (2026-04-02T08:16)debate: market_dynamics (2026-04-02T08:35)debate: market_dynamics (2026-04-02T08:36)score_update: post_process (2026-04-02T08:47)score_update: post_process (2026-04-02T09:18)score_update: post_process (2026-04-02T09:49)debate: debate_engine (2026-04-02T10:19)evidence: evidence_update (2026-04-02T10:50)evidence: market_dynamics (2026-04-02T11:04)score_update: market_dynamics (2026-04-02T11:10)debate: debate_engine (2026-04-02T11:21)evidence: evidence_update (2026-04-02T11:52)debate: debate_engine (2026-04-02T12:23)debate: debate_engine (2026-04-02T12:54)debate: debate_engine (2026-04-02T13:25)score_update: market_dynamics (2026-04-02T13:56)evidence: evidence_update (2026-04-02T14:27)score_update: market_dynamics (2026-04-02T15:33)debate: market_dynamics (2026-04-02T15:55)evidence: market_dynamics (2026-04-02T16:05)evidence: market_dynamics (2026-04-02T17:18)evidence: market_dynamics_seed (2026-04-02T18:16)score_update: market_dynamics (2026-04-02T20:07)evidence: evidence_batch_update (2026-04-04T09:08)evidence: evidence_batch_update (2026-04-13T02:18)evidence: evidence_batch_update (2026-04-13T02:18) 1.00 0.00 2026-04-022026-04-102026-04-22 Market PriceScoreevidencedebate 216 events
7d Trend
Stable
7d Momentum
▼ 1.1%
Volatility
Medium
0.0350
Events (7d)
6
⚡ Price Movement Log Recent 15 events
Event Price Change Source Time
📄 New Evidence $0.510 ▲ 1.3% evidence_batch_update 2026-04-13 02:18
📄 New Evidence $0.504 ▲ 1.6% evidence_batch_update 2026-04-13 02:18
Recalibrated $0.496 ▼ 1.2% 2026-04-12 18:34
Recalibrated $0.502 ▼ 0.3% 2026-04-12 10:15
Recalibrated $0.504 ▼ 1.1% 2026-04-10 15:58
Recalibrated $0.509 ▲ 1.3% 2026-04-10 15:53
Recalibrated $0.503 ▼ 5.0% 2026-04-08 18:39
Recalibrated $0.529 ▲ 4.0% 2026-04-06 04:04
Recalibrated $0.509 ▼ 1.1% 2026-04-04 16:38
Recalibrated $0.515 ▲ 0.5% 2026-04-04 16:02
📄 New Evidence $0.512 ▲ 1.4% evidence_batch_update 2026-04-04 09:08
Recalibrated $0.505 ▼ 0.9% 2026-04-04 01:39
Recalibrated $0.509 ▼ 24.3% 2026-04-03 23:46
Recalibrated $0.673 ▲ 6.0% market_dynamics 2026-04-03 01:06
Recalibrated $0.635 ▲ 22.6% market_dynamics 2026-04-03 01:06

Clinical Trials (5) Relevance: 44%

0
Active
0
Completed
282
Total Enrolled
PHASE1
Highest Phase
RAPA-501 Therapy for ALS PHASE2
RECRUITING · NCT04220190 · Rapa Therapeutics LLC
41 enrolled · 2025-01-02 · → 2026-07-01
RAPA-501-ALS is a phase 2/3 expansion cohort study of RAPA-501 autologous hybrid TREG/Th2 cells in patients living with amyotrophic lateral sclerosis (pwALS).
Amyotrophic Lateral Sclerosis
RAPA-501 Autologous T stem cells
MAD Phase I Study to Investigate Contraloid Acetate PHASE1
COMPLETED · NCT03955380 · Prof. Dr. Dieter Willbold
24 enrolled · 2018-12-12 · → 2019-04-03
This is a single-center multiple-ascending-dose clinical trial assessing the safety and tolerability of oral dosing of Contraloid acetate in healthy volunteers. The study drug Contraloid (alias RD2, a
Alzheimer Dementia Alzheimer Disease
Contraloid
Cerebrovascular Reactivity and Oxygen Metabolism as Markers of Neurodegeneration After Traumatic Brain Injury N/A
UNKNOWN · NCT04820881 · Washington D.C. Veterans Affairs Medical Center
60 enrolled · 2021-10-01 · → 2024-09
This grant award entitled, "Cerebrovascular Reactivity and Oxygen Metabolism as Markers for Neurodegeneration after Traumatic Brain Injury" (hereafter, "Neurovascular Study"), aims to determine if neu
Neurodegenerative Diseases
Stereotactic Intracerebral Injection of Allogenic IPSC-DAPs in Patients With Parkinson's Disease PHASE1
NOT_YET_RECRUITING · NCT07212088 · iCamuno Biotherapeutics Ltd.
12 enrolled · 2026-02-28 · → 2027-12-15
Parkinson's disease is a progressive neurodegenerative disorder characterized by high morbidity due to the limited regenerative capacity of dopaminergic neurons in the brain. Current drug treatments p
Parkinson Disease
ALC01 therapy
MRI Biomarkers in ALS N/A
COMPLETED · NCT02405182 · University of Alberta
145 enrolled · 2014-09 · → 2019-03
Amyotrophic lateral sclerosis (ALS) is a disabling and rapidly progressive neurodegenerative disorder. There is no treatment that significantly slows progression. Increasing age is an important risk f
Amyotrophic Lateral Sclerosis ALS Motor Neuron Diseases
Magnetic Resonance Imaging

📚 Cited Papers (30)

Mutations in desmoglein-2 gene are associated with arrhythmogenic right ventricular cardiomyopathy.
Circulation (2006) · PMID:16505173
1 figure
Figures
Figures
Figures available at source paper (no open-access XML found).
deep_link
Epidermal growth factor receptor as a therapeutic target in human thyroid carcinoma: mutational and functional analysis.
The Journal of clinical endocrinology and metabolism (2006) · PMID:16822827
1 figure
Figures
Figures
Figures available at source paper (no open-access XML found).
deep_link
Dynamism in gene expression across multiple studies.
Physiological genomics (2010) · PMID:19920211
1 figure
Figures
Figures
Figures available at source paper (no open-access XML found).
deep_link
Re: Use of an Amplatz Goose Neck Snare as a Target for Collateral Neck Vein Dialysis Catheter Placement
Journal of Vascular and Interventional Radiology (2001) · PMID:11585895
1 figure
Figures
Figures
Figures available at source paper (no open-access XML found).
deep_link
Re: Use of an Amplatz Goose Neck Snare as a Target for Collateral Neck Vein Dialysis Catheter Placement
Journal of Vascular and Interventional Radiology (2001) · PMID:11585895
No extracted figures yet
Mutations in desmoglein-2 gene are associated with arrhythmogenic right ventricular cardiomyopathy.
Circulation (2006) · PMID:16505173
No extracted figures yet
Epidermal growth factor receptor as a therapeutic target in human thyroid carcinoma: mutational and functional analysis.
The Journal of clinical endocrinology and metabolism (2006) · PMID:16822827
No extracted figures yet
Dynamism in gene expression across multiple studies.
Physiological genomics (2010) · PMID:19920211
No extracted figures yet
Glycosphingolipid-Glycan Signatures of Acute Myeloid Leukemia Cell Lines Reflect Hematopoietic Differentiation.
Journal of proteome research (2022) · PMID:35168327
No extracted figures yet
Glycosphingolipid-Glycan Signatures of Acute Myeloid Leukemia Cell Lines Reflect Hematopoietic Differentiation.
Journal of proteome research (2022) · PMID:35168327
No extracted figures yet
Exogenous GM1 shows limited CNS bioavailability in clinical trials for Parkinson's disease
Mov Disord (2019) · PMID:synthetic_30
No extracted figures yet
Preferential Regulation of Γ-Secretase-Mediated Cleavage of APP by Ganglioside GM1 Reveals a Potential Therapeutic Target for Alzheimer's Disease.
Advanced science (Weinheim, Baden-Wurttemberg, Germany) (2023) · PMID:37759382
No extracted figures yet

📓 Linked Notebooks (7)

📓 Lipid raft composition changes in synaptic neurodegeneration — Analysis Notebook
CI-generated notebook stub for analysis SDA-2026-04-01-gap-lipid-rafts-2026-04-01. Investigate how lipid raft composition (cholesterol metabolism, sphingolipids) changes in synaptic membranes during n …
📓 Lipid raft composition — Analysis Notebook
Comprehensive analysis notebook
📓 Lipid raft composition changes in synaptic neurodegeneration - Rich Analysis
Rich notebook with gene expression, pathway enrichment, and statistical analysis
📓 Lipid raft composition changes in synaptic neurodegeneration - Top 5 Rich Notebook
Rich notebook with gene expression, pathway enrichment, KG network, score heatmaps, and statistical analysis.
📓 Lipid raft composition changes in synaptic neurodegeneration — Rich Analysis
Enhanced notebook with gene expression, pathway enrichment, score heatmaps, and statistical analysis. Investigate how lipid raft composition (cholesterol metabolism, sphingolipids) changes in synaptic …
📓 Lipid raft composition changes in synaptic neurodegeneration -- Rich Analysis Notebook
Comprehensive analysis with gene expression plots, pathway enrichment, statistical tests, and debate highlights for: Lipid raft composition changes in synaptic neurodegeneration
📓 Lipid raft composition changes in synaptic neurodegeneration
Investigate how lipid raft composition (cholesterol metabolism, sphingolipids) changes in synaptic membranes during neurodegeneration and their mechanistic role in amyloid-beta processing and synapse …
→ Browse all notebooks

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Wiki Pages

ANG — AngiogeningeneANG ProteinproteinSynaptic Biomarkers in NeurodegenerationbiomarkerGlutamate - Excitotoxicity and Neurodegeneration BbiomarkerNeuroimaging Biomarkers for NeurodegenerationbiomarkerMetabolomic Biomarkers in NeurodegenerationbiomarkerDNA Methylation Biomarkers in NeurodegenerationbiomarkerExosomal Biomarkers in NeurodegenerationbiomarkerCell-Free DNA Biomarkers in NeurodegenerationbiomarkerExosomal miR-155 in NeurodegenerationbiomarkerMDS 2026 — Fluid Biomarker Advances in NeurodegeneeventLiquid Biopsy in NeurodegenerationbiomarkerCSF Neurofilament Light Chain (NfL) in NeurodegenebiomarkerBlood-Based Biomarkers for NeurodegenerationbiomarkerIL-6 (Interleukin-6) in Neurodegenerationbiomarker

KG Entities (48)

ABCA1ABCA1/LDLR/SREBF2ADAM10AKTAPPAcid sphingomyelinase / ceramide signaliBACE1BACE1_clusteringBAXBeta-secretase / amyloidogenic pathwayCYP46A1Cholesterol 24-hydroxylase / brain choleCholesterol efflux / lipid transportFLOT1JNKLDLRLipid raft membrane organizationNLRP3SGMS1SGMS1/SGMS2

Linked Experiments (1)

Oligodendrocyte-Myelin Dysfunction Validation in Parkinson's Diseaseclinical | tests | 0.40

Related Hypotheses

TREM2-Dependent Astrocyte-Microglia Cross-talk in Neurodegeneration
Score: 0.990 | neurodegeneration
TREM2-Dependent Microglial Senescence Transition
Score: 0.950 | neurodegeneration
PLCG2 Allosteric Modulation as a Precision Therapeutic for TREM2-Dependent Microglial Dysfunction
Score: 0.941 | neurodegeneration
Multi-Biomarker Composite Index Surpassing Amyloid PET for Treatment Response Prediction
Score: 0.933 | neurodegeneration
CYP46A1 Gene Therapy for Age-Related TREM2-Mediated Microglial Senescence Reversal
Score: 0.921 | neurodegeneration

Estimated Development

Estimated Cost
$42M
Timeline
5.8 years

🧪 Falsifiable Predictions (1)

1 total 0 confirmed 0 falsified
Modulation of ST3GAL2/ST8SIA1 will affect the proposed pathway
pending conf: 0.65
Expected outcome: ST3GAL2/ST8SIA1 knockdown/overexpression shows measurable effect
Falsified by: No effect observed from ST3GAL2/ST8SIA1 modulation in relevant models

Knowledge Subgraph (178 edges)

activates (2)

BACE1_clusteringamyloid_beta_productionsphingomyelin_synthesismembrane_fluidity

associated with (15)

cholesterol_effluxlipid_raft_compositionFLOT1lipid_raft_scaffoldingSMPD1neurodegenerationABCA1neurodegenerationSREBF2neurodegeneration
▸ Show 10 more
CYP46A1neurodegenerationST3GAL2neurodegenerationST8SIA1neurodegenerationSGMS1neurodegenerationSGMS2neurodegenerationFLOT1neurodegenerationBACE1neurodegenerationABCA1/LDLR/SREBF2neurodegenerationST3GAL2/ST8SIA1neurodegenerationSGMS1/SGMS2neurodegeneration

causes (1)

ceramide_biosynthesislipid_raft_dysfunction

co associated with (15)

ABCA1/LDLR/SREBF2FLOT1ABCA1/LDLR/SREBF2SGMS1/SGMS2ABCA1/LDLR/SREBF2BACE1BACE1FLOT1BACE1SGMS1/SGMS2
▸ Show 10 more
BACE1CYP46A1ABCA1/LDLR/SREBF2CYP46A1CYP46A1FLOT1CYP46A1SGMS1/SGMS2FLOT1SGMS1/SGMS2CYP46A1ST3GAL2/ST8SIA1BACE1ST3GAL2/ST8SIA1ABCA1/LDLR/SREBF2ST3GAL2/ST8SIA1FLOT1ST3GAL2/ST8SIA1SGMS1/SGMS2ST3GAL2/ST8SIA1

co discussed (105)

BACE1NLRP3AKTBACE1BAXJNKADAM10APPADAM10BACE1
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BACE1TAUFLOT1SREBF2FLOT1CYP46A1FLOT1SGMS2FLOT1ABCA1FLOT1BACE1FLOT1ST3GAL2FLOT1ST8SIA1FLOT1LDLRFLOT1SMPD1FLOT1SGMS1SREBF2CYP46A1SREBF2SGMS2SREBF2ABCA1SREBF2BACE1SREBF2ST3GAL2SREBF2ST8SIA1SREBF2LDLRSREBF2SMPD1SREBF2SGMS1CYP46A1SGMS2CYP46A1ABCA1CYP46A1BACE1CYP46A1ST3GAL2CYP46A1ST8SIA1CYP46A1LDLRCYP46A1SMPD1CYP46A1SGMS1SGMS2ABCA1SGMS2BACE1SGMS2ST3GAL2SGMS2ST8SIA1SGMS2LDLRSGMS2SMPD1SGMS2SGMS1ABCA1BACE1ABCA1ST3GAL2ABCA1ST8SIA1ABCA1LDLRABCA1SMPD1ABCA1SGMS1BACE1ST3GAL2BACE1ST8SIA1BACE1LDLRBACE1SMPD1BACE1SGMS1ST3GAL2ST8SIA1ST3GAL2LDLRST3GAL2SMPD1ST3GAL2SGMS1ST8SIA1LDLRST8SIA1SMPD1ST8SIA1SGMS1LDLRSMPD1LDLRSGMS1SMPD1SGMS1ST8SIA1BACE1ST8SIA1CYP46A1ST8SIA1ST3GAL2ST8SIA1FLOT1ST8SIA1ABCA1ST8SIA1SGMS2ST8SIA1SREBF2LDLRBACE1LDLRCYP46A1LDLRST3GAL2LDLRFLOT1LDLRABCA1LDLRSGMS2LDLRSREBF2BACE1CYP46A1BACE1FLOT1BACE1ABCA1BACE1SGMS2BACE1SREBF2CYP46A1FLOT1CYP46A1SREBF2ST3GAL2FLOT1ST3GAL2ABCA1ST3GAL2SGMS2ST3GAL2SREBF2SGMS1FLOT1SGMS1ABCA1SGMS1SGMS2SGMS1SMPD1SGMS1SREBF2ABCA1SGMS2ABCA1SREBF2SGMS2SREBF2SMPD1SREBF2SMPD1LDLRSMPD1ST3GAL2SMPD1ST8SIA1SMPD1ABCA1SMPD1SGMS2SMPD1CYP46A1LDLRST8SIA1ST3GAL2CYP46A1ABCA1CYP46A1SGMS2CYP46A1

implicated in (3)

ABCA1/LDLR/SREBF2neurodegenerationST3GAL2/ST8SIA1neurodegenerationSGMS1/SGMS2neurodegeneration

interacts with (10)

ABCA1LDLRABCA1SREBF2LDLRABCA1LDLRSREBF2SREBF2ABCA1
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SREBF2LDLRST3GAL2ST8SIA1ST8SIA1ST3GAL2SGMS1SGMS2SGMS2SGMS1

involved in (6)

ABCA1/LDLR/SREBF2cholesterol_efflux___lipid_transportCYP46A1cholesterol_24_hydroxylase___brain_cholesterol_turnoverST3GAL2/ST8SIA1sphingolipid___ceramide_signalingSGMS1/SGMS2sphingolipid___ceramide_signalingFLOT1lipid_raft_membrane_organization
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BACE1beta_secretase___amyloidogenic_pathway

modifies (3)

SMPD1ceramide_biosynthesisSGMS1sphingomyelin_synthesisST3GAL2ganglioside_biosynthesis

participates in (11)

SMPD1Acid sphingomyelinase / ceramide signalingABCA1Cholesterol efflux / lipid transportLDLRCholesterol efflux / lipid transportSREBF2Cholesterol efflux / lipid transportCYP46A1Cholesterol 24-hydroxylase / brain cholesterol turnover
▸ Show 6 more
ST3GAL2Sphingolipid / ceramide signalingST8SIA1Sphingolipid / ceramide signalingSGMS1Sphingolipid / ceramide signalingSGMS2Sphingolipid / ceramide signalingFLOT1Lipid raft membrane organizationBACE1Beta-secretase / amyloidogenic pathway

regulates (4)

CYP46A1cholesterol_metabolismcholesterol_metabolismBACE1_clusteringABCA1cholesterol_effluxganglioside_biosynthesissynaptic_membrane_organization

targets (3)

h-9d29bfe5ABCA1/LDLR/SREBF2h-12599989ST3GAL2/ST8SIA1h-fdb07848SGMS1/SGMS2

Mechanism Pathway for ST3GAL2/ST8SIA1

Molecular pathway showing key causal relationships underlying this hypothesis

graph TD
    h_12599989["h-12599989"] -->|targets| ST3GAL2_ST8SIA1["ST3GAL2/ST8SIA1"]
    ST3GAL2_ST8SIA1_1["ST3GAL2/ST8SIA1"] -->|associated with| neurodegeneration["neurodegeneration"]
    ST3GAL2_ST8SIA1_2["ST3GAL2/ST8SIA1"] -->|implicated in| neurodegeneration_3["neurodegeneration"]
    CYP46A1["CYP46A1"] -->|co associated with| ST3GAL2_ST8SIA1_4["ST3GAL2/ST8SIA1"]
    BACE1["BACE1"] -->|co associated with| ST3GAL2_ST8SIA1_5["ST3GAL2/ST8SIA1"]
    ABCA1_LDLR_SREBF2["ABCA1/LDLR/SREBF2"] -->|co associated with| ST3GAL2_ST8SIA1_6["ST3GAL2/ST8SIA1"]
    FLOT1["FLOT1"] -->|co associated with| ST3GAL2_ST8SIA1_7["ST3GAL2/ST8SIA1"]
    SGMS1_SGMS2["SGMS1/SGMS2"] -->|co associated with| ST3GAL2_ST8SIA1_8["ST3GAL2/ST8SIA1"]
    ST3GAL2_ST8SIA1_9["ST3GAL2/ST8SIA1"] -->|involved in| sphingolipid___ceramide_s["sphingolipid___ceramide_signaling"]
    style h_12599989 fill:#4fc3f7,stroke:#333,color:#000
    style ST3GAL2_ST8SIA1 fill:#ce93d8,stroke:#333,color:#000
    style ST3GAL2_ST8SIA1_1 fill:#ce93d8,stroke:#333,color:#000
    style neurodegeneration fill:#ef5350,stroke:#333,color:#000
    style ST3GAL2_ST8SIA1_2 fill:#ce93d8,stroke:#333,color:#000
    style neurodegeneration_3 fill:#ef5350,stroke:#333,color:#000
    style CYP46A1 fill:#ce93d8,stroke:#333,color:#000
    style ST3GAL2_ST8SIA1_4 fill:#ce93d8,stroke:#333,color:#000
    style BACE1 fill:#ce93d8,stroke:#333,color:#000
    style ST3GAL2_ST8SIA1_5 fill:#ce93d8,stroke:#333,color:#000
    style ABCA1_LDLR_SREBF2 fill:#ce93d8,stroke:#333,color:#000
    style ST3GAL2_ST8SIA1_6 fill:#ce93d8,stroke:#333,color:#000
    style FLOT1 fill:#ce93d8,stroke:#333,color:#000
    style ST3GAL2_ST8SIA1_7 fill:#ce93d8,stroke:#333,color:#000
    style SGMS1_SGMS2 fill:#ce93d8,stroke:#333,color:#000
    style ST3GAL2_ST8SIA1_8 fill:#ce93d8,stroke:#333,color:#000
    style ST3GAL2_ST8SIA1_9 fill:#ce93d8,stroke:#333,color:#000
    style sphingolipid___ceramide_s fill:#81c784,stroke:#333,color:#000

Predicted Protein Structure

🔮 ST3GAL2 — AlphaFold Prediction Q16842 Click to expand 3D viewer

AI-predicted structure from AlphaFold | Powered by Mol* | Rotate: click+drag | Zoom: scroll | Reset: right-click

Source Analysis

Lipid raft composition changes in synaptic neurodegeneration

neurodegeneration | 2026-04-01 | completed

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