gene 1,050 words KG: KDM6B
Contents

KDM6B (JMJD3)

🧬 Gene Info
Gene SymbolKDM6B
Full NameLysine Demethylase 6B
AliasesJMJD3
Chromosome17p13.1
Functionencodes a Jumonji C (JmjC) domain-containing histone demethylase that specifically removes di- and trimethyl marks from histone H3 lysine 27 (H3K27me2/3).
PathwaysNF-κB
UniProt ID[O15054](https://www.uniprot.org/uniprot/O15054)
Ensembl IDENSG00000132510
GeneCardsKDM6B
Human Protein AtlasKDM6B
Neuronal differentiationKDM6B removes H3K27me3 from neurogenic gene promoters during the transition from neural stem cells to postmitotic neurons, activating expression of NEUROD1, TBR1, and other neuronal identity genes
Macrophage polarizationKDM6B drives M1 (pro-inflammatory) macrophage/microglial polarization by activating inflammatory gene programs
Aging epigenomeKDM6B expression increases with aging, contributing to the progressive loss of H3K27me3 that characterizes the aging epigenome and potentially derepressing deleterious gene programs
Neuroinflammatory amplificationKDM6B removes H3K27me3 from pro-inflammatory gene promoters (TNF, IL1B, IL6, complement components), converting microglia to a chronic inflammatory state that damages neurons
[Tau](/proteins/tau) pathologyKDM6B activates kinase genes (CDK5, GSK3B) that hyperphosphorylate tau, promoting neurofibrillary tangle formation
Associated DiseasesNAFLD, NASH
Known Drugs/Compoundsrapamycin
InteractionsACOX1, Adiponectin, ADIPOQ, AMPK, AND, ATG
SciDEX HypothesesMicroglial priming is primarily epigenetic, with m
KG Connections219 knowledge graph edges
DatabasesGeneCardsNCBI GeneHPASTRING

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Knowledge Graph

Related Hypotheses (21)

Astrocyte-Mediated Neuronal Epigenetic Rescue
Score: 0.73
Palmitoylation-Targeted BACE1 Trafficking Disruptors
Score: 0.69
Cross-Seeding Prevention Strategy
Score: 0.69
TREM2 Conformational Stabilizers for Synaptic Discrimination
Score: 0.69
Glycine-Rich Domain Competitive Inhibition
Score: 0.64
TREM2-mediated microglial tau clearance enhancement
Score: 0.59
Cryptic Exon Silencing Restoration
Score: 0.53
Nutrient-Sensing Epigenetic Circuit Reactivation
Score: 0.91
Transcriptional Autophagy-Lysosome Coupling
Score: 0.88
Cell-Type Specific TREM2 Upregulation in DAM Microglia
Score: 0.76
Senescence-Activated NAD+ Depletion Rescue
Score: 0.76
APOE-TREM2 Interaction Modulation
Score: 0.74
SIRT3-Mediated Mitochondrial Deacetylation Failure with PINK
Score: 0.74
Senescence-Associated Myelin Lipid Remodeling
Score: 0.73
Senescence-Induced Lipid Peroxidation Spreading
Score: 0.73
Metabolic Circuit Breaker via Lipid Droplet Modulation
Score: 0.71
Autophagosome Maturation Checkpoint Control
Score: 0.71
Mitochondrial-Nuclear Epigenetic Cross-Talk Restoration
Score: 0.70
TREM2-Mediated Selective Aggregate Clearance Pathway
Score: 0.58
TREM2-Dependent Microglial Senescence Transition
Score: 0.54
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Related Analyses (7)

Synaptic pruning by microglia in early AD
neurodegeneration · archived
Lipid raft composition changes in synaptic neurodegeneration
neurodegeneration · completed
RNA binding protein dysregulation across ALS FTD and AD
neurodegeneration · archived
TDP-43 phase separation therapeutics for ALS-FTD
neurodegeneration · archived
Tau propagation mechanisms and therapeutic interception poin
neurodegeneration · archived

Related Experiments (5)

Microglial TREM2 Agonist In Vivo Efficacy
validation · proposed · Score: 0.45
TREM2 Function in Alzheimer's Disease — From Risk Variant to
validation · proposed · Score: 0.45
Non-Motor Symptom Progression in Parkinson's Disease — Mecha
clinical · proposed · Score: 0.40
Mechanism: Progranulin Loss and TDP-43 Pathology in FTD
validation · proposed · Score: 0.40
TDP-43 PET Ligand Development for FTD and ALS
clinical · proposed · Score: 0.40

See Also (9)

AMPK (AMP-Activated Protein Kinase)
entity · KG edge: activates
Autophagy Enhancement Drug Screening for Neurodegenerat
experiment · KG edge: activates
ATG7 Gene
gene · KG edge: activates
BECN1 Gene
gene · KG edge: activates
C1QA Gene — Complement Component 1q A Chain
gene · KG edge: interacts_with

Knowledge Graph (12 edges)

FGF21 activates KDM6B
ULK1 activates KDM6B
KDM6B activates LC3
KDM6B activates ATG7
PPARA interacts_with KDM6B
ULK1 interacts_with KDM6B
STX17 interacts_with KDM6B
SQSTM1 interacts_with KDM6B
NOS3 interacts_with KDM6B
STING1 interacts_with KDM6B

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