SGMS1

Sphingomyelin synthase 1

Score: 0.462 Price: $0.46 Low Druggability Status: active Wiki: SGMS1
๐Ÿง  Neurodegeneration
HYPOTHESES
1
PAPERS
0
KG EDGES
7
DEBATES
1

3D Protein Structure

🔮 SGMS1 โ€” AlphaFold Q86VZ5 Click to expand

AI-predicted structure from AlphaFold | Powered by Mol*

Druggability & Clinical Context

Druggability
Low
Score: 0.29
Clinical Stage
Approved
Target Class
Enzyme
Safety
0.50
Druggability Analysis
Drug Development0.60
Structural Tractability0.30
Target Class0.85
Safety Profile0.50
Key Metrics
PDB Structures:
0
Known Drugs:
1
Approved:
0
In Clinical Trials:
0
Drug Pipeline (1 compounds)
1 Preclinical
Druggability Rationale: SGMS1 presents low druggability (0.30 score) despite being an enzyme class with established precedent, primarily due to lack of available crystal structures (0 PDB entries) and limited structural characterization beyond AlphaFold predictions. The single known preclinical inhibitor (D609) suggests the active site is targetable, but the absence of high-resolution structural data significantly hampers rational drug design and optimization efforts.
Mechanism: SGMS1 inhibitors would block the transfer of phosphocholine from phosphatidylcholine to ceramide, reducing sphingomyelin synthesis and potentially decreasing membrane rigidity and inflammatory signaling. This mechanism could modulate membrane-dependent cellular processes and may have therapeutic effects in lipid storage disorders and metabolic diseases.
Drug Pipeline (1 compounds)
1 Preclinical
Known Drugs:
D609 (preclinical) โ€” Tricyclodecan-9-yl xanthate, SMS inhibitor
Structural Data:
PDB โ€”AlphaFold โœ“Cryo-EM โ€”
UniProt: Q86VZ5

🔮 Predicted Protein Structure (AlphaFold)

🔮 SGMS1 — AlphaFold Q86VZ5 Click to expand interactive 3D viewer

AI-predicted structure from AlphaFold EBI | Powered by Mol* | Rotate: click+drag | Zoom: scroll

Selectivity & Safety Considerations

SGMS1 has a closely related homolog (SGMS2) with overlapping substrate specificity, presenting a significant selectivity challenge for achieving isoform-selective inhibition. Off-target modulation of sphingomyelin synthesis through SGMS2 could compromise therapeutic specificity and necessitates careful pharmacological profiling to avoid unintended lipid metabolic disruption.

3D Protein Structure (AlphaFold)

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AlphaFold predicted structure available for Q86VZ5

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Clinical Trials (8)

Relevant trials from ClinicalTrials.gov

Active
1
Completed
7
Total Enrollment
860
By Phase
NA: 5 ยท PHASE1: 1 ยท PHASE2: 1 ยท Unknown: 1
Anger Control Training for Youth With Tourette Syndrome Completed
NA NCT00486551 n=26
Tourette Syndrome, Chronic Tic Disorder, Oppositional Defiant Disorder
Interventions: Anger control training
Sponsor: Yale University | Started: 2001-08
Adaptive vs. Continuous Subthalamic Nucleus Deep Brain Stimulation in Parkinson's Disease Recruiting
NA NCT06909045 n=130
Deep Brain Stimulation, Parkinson Disease
Interventions: Adaptive DBS, Continue DBS
Sponsor: Academisch Medisch Centrum - Universiteit van Amsterdam (AMC | Started: 2026-01-27
Expiratory Muscle Training in Patients With Parkinson's Disease Completed
PHASE1 NCT00843739 n=90
Parkinson's Disease
Interventions: EMST - Active Treatment, sham EMST
Sponsor: University of Florida | Started: 2004-01
Study of the Follow-up of Stroke Treated With Anticoagulants Completed
Unknown NCT03292575 n=441
Stroke
Interventions: Anticoagulants
Sponsor: Centre Hospitalier Universitaire Dijon | Started: 2016-01
Early Detection and Prevention of Mild Cognitive Impairment Due to Cerebrovascular Disease Completed
NA NCT01924312 n=80
Cerebrovascular Disease, Mild Cognitive Impairment
Interventions: Heart Health Intervention
Sponsor: Gregory Jicha, 323-5550 | Started: 2013-05
Effects of Modern Board Games on Well Being in Older Adults Completed
NA NCT06306365 n=35
Executive Functions
Interventions: Modern board game-based learning
Sponsor: European University Miguel de Cervantes | Started: 2024-02-07
Treatment of Alzheimer's and Dementia With the Metabolism, Infections, Nutrition, Drug Elimination (MIND) Protocol Completed
NA NCT02260167 n=25
Alzheimer's Disease, Dementia
Interventions: A mix of natural treatments and medicati
Sponsor: Practitioners Alliance Network | Started: 2014-09
A Phase 2 Study to Evaluate Safety of Long-term AL001 Dosing in Frontotemporal Dementia (FTD) Patients (INFRONT-2) Completed
PHASE2 NCT03987295 n=33
Frontotemporal Dementia
Interventions: AL001
Sponsor: Alector Inc. | Started: 2019-09-27

Linked Hypotheses (0)

No linked hypotheses

Linked Experiments (0)

No linked experiments

Scoring Dimensions

Portfolio 0.48 (25%) Druggability 0.29 (20%) Evidence 0.23 (20%) Safety 0.50 (15%) Competitive 0.70 (10%) Connectivity 0.90 (10%) 0.462 composite

Knowledge Graph (20)

associated with (2)

SGMS1neurodegenerationSGMS1amyloid-beta peptide generation

co discussed (10)

FLOT1SGMS1SREBF2SGMS1CYP46A1SGMS1SGMS2SGMS1ABCA1SGMS1
▸ Show 5 more
BACE1SGMS1ST3GAL2SGMS1ST8SIA1SGMS1LDLRSGMS1SMPD1SGMS1

expressed in (1)

SGMS1brain

interacts with (2)

SGMS1SGMS2SGMS2SGMS1

involved in (2)

SGMS1sphingomyelinSGMS1membrane transport

modifies (1)

SGMS1sphingomyelin_synthesis

participates in (1)

SGMS1Sphingolipid / ceramide signaling

regulates (1)

ABPSGMS1

Debate History (1)

Should SGMS1 (Sphingomyelin synthase 1) be prioritized as a therapeutic target f2026-04-22