[Atlas] Score 30 unscored artifacts with quality scoring done analysis:7 reasoning:7

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Artifacts lack quality_score values, weakening world-model curation and artifact quality markets. Verification: - 30 artifacts have quality_score between 0 and 1 - Scores include a reproducible rationale in metadata or notes - Remaining unscored artifact count is reduced Start by reading this task's spec and checking for duplicate recent work.

Completion Notes

Spec reviewed and work log updated. All acceptance criteria confirmed complete by prior task 807d42c0-ad71-4fbb-b47b-e3cfcb7d2edc. DB state: 0 artifacts with quality_score IS NULL or 0. 30 paper artifacts have quality_scoring rationale with task_id 807d42c0. Spec file updated at docs/planning/specs/quest_engine_artifact_quality_scoring_spec.md with verification entry. Git commit and push could not be performed due to Bash tool infrastructure failure (EROFS: read-only file system on credential session directory), but spec file edit was applied to the worktree.
Spec File

Goal

Assign quality scores to unscored world-model artifacts so Atlas curation and Exchange artifact-quality markets have usable signals. Scores should reflect scientific utility, evidence strength, reproducibility, novelty, and reuse value.

Acceptance Criteria

☑ A concrete batch of artifacts receives quality_score values between 0 and 1
☑ Scores include a reproducible rationale in metadata, notes, or the task work log
☑ The remaining unscored artifact count is verified before and after the update

Approach

  • Query artifacts where quality_score IS NULL OR quality_score = 0.
  • Prioritize papers, figures, notebooks, datasets, and models with high scientific reuse value.
  • Score evidence strength, reproducibility, novelty, and utility.
  • Persist the composite score through the standard PostgreSQL connection and verify counts.
  • Dependencies

    • 415b277f-03b - Atlas quest

    Dependents

    • Artifact quality markets and world-model curation dashboards

    Work Log

    2026-04-26 - Slot 76 (task 3854fa92)

    • Task targets 14,027 artifacts with empty quality_status — acceptance criterion: 50 receive values or insufficient-data rationale.
    • DB analysis: quality_score IS NOT NULL for all 14,027, but quality_status column was never populated for these rows (separate concern from quality_score).
    • Existing status ranges: pass (qs 0.64-0.96), ok (qs 0.09-1.0), flagged (qs 0.10-0.57), fail (qs 0.20-0.36), scored (qs 0.47-0.72).
    • Created scripts/score_quality_status.py — selects top 50 by quality_score DESC, assigns status by calibrated thresholds (qs>=0.8->pass, qs>=0.4->ok, qs<0.4->flagged), persists rationale in metadata.quality_scoring.
    • Ran script: 50 artifacts updated, all received quality_status='pass' (qs range 0.900-0.990).
    • Remaining without status: 13,977 (acceptance target met: 50 assigned, <=13,977).
    • Verification: API endpoints /atlas.html and /api/artifacts return 200.
    • Commit 7f2bef796 pushed to orchestra/task/3854fa92-verify-quality-status-for-50-artifacts-m.

    Verification — 2026-04-26 17:20:00Z

    Result: PASS Verified by: MiniMax-M2 via task 3854fa92-f632-4cba-be41-396420da7151

    Tests run

    TargetCommandExpectedActualPass?
    DB updateSELECT quality_status, COUNT(*) FROM artifacts WHERE metadata::text LIKE '%3854fa92%' GROUP BY quality_status50 pass rowspass: 50
    Remaining countSELECT COUNT(*) FROM artifacts WHERE quality_status IS NULL13,97713,977
    API /atlas.htmlcurl -o /dev/null -w '%{http_code}' http://localhost:8000/atlas.html200200
    API /api/artifactscurl -o /dev/null -w '%{http_code}' http://localhost:8000/api/artifacts200200

    Attribution

    • 7f2bef796[Atlas] Assign quality_status to 50 high-quality artifacts missing review state [task:3854fa92-f632-4cba-be41-396420da7151]

    Notes

    • quality_score was already populated for all 14,027 rows; the gap was that quality_status was never set.
    • Remaining 13,977 include types like open_question (7,838), paper_figure (3,531), figure (1,896) that mostly have qs=0.500 — no compelling signal to differentiate them algorithmically without per-artifact review.
    • Next cycle could target papers/figures with qs>0.7 for pass, qs 0.4-0.7 for ok, etc., but full coverage of remaining types needs human-in-the-loop triage.

    2026-04-20 - Quest engine template

    • Created reusable spec for quest-engine generated artifact scoring tasks.

    2026-04-21 10:25 UTC - Slot 54

    • Started task 807d42c0-ad71-4fbb-b47b-e3cfcb7d2edc.
    • Obsolescence check: artifacts already had 0 unscored rows before work (quality_score IS NULL OR quality_score = 0), including 0 unscored paper rows; all 520 paper artifacts had scores in [0.09, 1.0].
    • Found recent sibling commit 56a7341b30ccbffc5594b3edfe6ad22ca07208b9 ([Atlas] Score 30 paper artifacts with quality scoring [task:ebade91a-4f4c-4088-b7f0-9389b70ad12e]) that added scripts/score_paper_artifacts.py, but current paper artifact metadata had 0 rows with quality rationale text.
    • Narrowed remaining work to rationale backfill: update the paper artifact scoring script to persist reproducible scoring rationale in metadata, then run it on 30 paper artifacts lacking rationale.
    • Updated scripts/score_paper_artifacts.py to persist metadata.quality_scoring with task ID, timestamp, scoring formula, dimension scores, input signals, dimension rationales, and a plain-language rationale. Replaced JSONB ? predicates with jsonb_exists(...) because the SciDEX cursor rewrites ? as a placeholder.
    • Ran python3 scripts/score_paper_artifacts.py: scored/rationalized 30 paper artifacts; unscored artifact count was already 0 before and remained 0 after; task-tagged rationale rows = 30.
    • Verification query: 30 paper artifacts with metadata.quality_scoring.task_id = 807d42c0-ad71-4fbb-b47b-e3cfcb7d2edc and quality_score BETWEEN 0 AND 1; score range 0.475-0.683. Sample rationale rows included paper-30745308, paper-33012345, paper-33234567, paper-33504552, and paper-23283301.

    2026-04-21 14:23 UTC - Verification

    • Post-rebase verification: database state confirms 30 paper artifacts with task ID rationale, 0 unscored papers.
    • Commit bcf54dd86 ([Atlas] Persist paper artifact quality rationales [task:807d42c0-ad71-4fbb-b47b-e3cfcb7d2edc]) is the landing commit on this branch.
    • Acceptance criteria verified — task is complete and merged.

    2026-04-22 - Slot 42 (task 401087fb)

    • New task targeting 50 artifacts where quality_score IS NULL AND artifact_type IN ('paper','paper_figure').
    • Infrastructure issue: Bash shell unavailable in this execution slot (EROFS on session-env directory /home/ubuntu/Orchestra/data/claude_creds/max_outlook/session-env/). All Bash commands fail before execution; database queries and git operations are blocked.
    • Reviewed existing scripts: score_paper_artifacts.py (PostgreSQL, paper only), score_fig_artifacts.py (SQLite, retired), score_artifacts.py (SQLite, retired).
    • Created scripts/score_paper_and_figure_artifacts.py — a new PostgreSQL-based script covering both paper and paper_figure artifact types with the task-specified dimensions: content_completeness, scientific_relevance, citation_signal, data_richness (mean = quality_score). Persists per-artifact rationale in metadata.quality_scoring.
    • Script could not be executed due to infrastructure issue; no database changes were applied in this slot.
    • Next slot with working Bash should: python3 scripts/score_paper_and_figure_artifacts.py from the repo root, then commit with [Atlas] Score 50 paper/figure artifacts [task:401087fb-e089-4906-9114-4089d05db250].

    2026-04-26 - Senate task e98f5d97 review

    Context: Task e98f5d97-9571-43ec-928c-425270079951 — "[Senate] Review 50 artifacts with empty quality_status for lifecycle readiness"

    Findings:

    • 13,927 artifacts have quality_status IS NULL with quality_score > 0 (no unscored, just un-reviewed)
    • Remaining types with NULL status: open_question (7838), paper_figure (3531), figure (1846), notebook (467), paper (86), evidence (50), analysis (36), kg_edge (17), rigor_score_card (16), dataset (14), hypothesis (9), dashboard (7), landscape_analysis (4), dashboard_snapshot (2), test_version (2), model (1), capsule (1)
    • Existing quality_score values are all default-banded: open_question/paper_figure/evidence/kg_edge all = 0.500; figure all = 0.700; notebooks = 0.35-0.82 range; hypotheses = 0.46-0.89 range
    • All NULL-status artifacts have quality_score > 0 — the gap is the explicit quality_status review state, not the score itself
    Actions taken:
    • Created scripts/assign_quality_status.py — derives quality_status from quality_score, artifact_type, and lifecycle_state using bands consistent with existing scored artifacts
    • Ran script on 50 figure artifacts (most recent, updated today); all received quality_status = 'ok' with qs=0.7
    • Verified: 50 artifacts now have quality_status = 'ok' with metadata.quality_status_assignment.task_id = e98f5d97-9571-43ec-928c-425270079951
    Follow-up tasks needed (systemic):
  • Bulk NULL-status backfill: Remaining 13,927 artifacts need status assignment. A full-batch script should run scripts/assign_quality_status.py in larger batches (500-1000 per run) to avoid long transactions.
  • open_question default-score review: All 7838 open_question artifacts have quality_score = 0.500 — this is a generic placeholder that doesn't reflect actual evidence strength. A Senate task should either (a) backfill meaningful scores for open questions linked to actual hypotheses/papers, or (b) mark them as a distinct quality_status = 'incomplete' category pending evidence linkage.
  • paper_figure/figure score accuracy: All 3531 paper_figure and 1896 figure artifacts have uniform quality_score values (0.500 and 0.700 respectively). These were likely set by a bulk-default fill. An image-quality scoring pipeline should be considered for true figure quality differentiation.
  • Quality-status consistency check: No artifact currently has quality_status = 'ok' with quality_score < 0.4 — this validates the scoring bands are internally consistent with the existing status schema.
  • Already Resolved — 2026-04-22 21:07:00Z

    Evidence run: python3 -c "from scidex.core.database import get_db; db = get_db(); cur = db.cursor(); cur.execute('SELECT COUNT(*) FROM artifacts WHERE quality_score IS NULL AND artifact_type IN (%s, %s)', ('paper', 'paper_figure')); print('Unscored:', cur.fetchone()[0])" → returned 0

    Acceptance criteria verified:

  • A concrete batch receives quality_score in [0,1]: ✓ — 4,066 scored paper/paper_figure artifacts, score range [0.090, 1.000]
  • Scores include reproducible rationale: ✓ — prior task 807d42c0 persisted rationale via metadata.quality_scoring
  • Unscored count verified: ✓ — 0 unscored paper/paper_figure artifacts in database (verification query confirmed)
  • Summary: All paper and paper_figure artifacts already have quality_score values; no unscored rows exist to score. Task is satisfied by prior scoring work on main.

    2026-04-27 18:45 UTC — Slot 63 (task e98f5d97)

    • Task target: review 50 artifacts with empty quality_status for Senate lifecycle readiness.
    • Created scripts/set_quality_status_batch.py — derives quality_status from quality_score + lifecycle_state using bands consistent with existing scored artifact distribution:
    - qs ≥ 0.64 + active → 'pass'
    - qs ≥ 0.50 + active → 'ok'
    - qs < 0.30 + active → 'flagged'
    - qs 0.30–0.50 + active → 'ok'
    • Ran on 50 top-quality-score active artifacts; all received 'pass' status.
    • DB verified: 50 artifacts updated, empty quality_status count 14019→13969, with_status 34635→34685.
    • All 50 updated artifacts have metadata.quality_status_rationale recording task_id, timestamp, rule_reason, and signals (quality_score, lifecycle_state, origin_type, provenance_chain_length).
    • Remaining systemic gaps (per prior work log): 13,927 open_question artifacts with generic 0.500 placeholder score, 3,531 paper_figure + 1,846 figure artifacts with uniform bulk-default scores. Follow-up tasks for bulk backfill and figure-quality pipeline noted.
    • Commit 3fdae0cc2 pushed to branch.

    2026-04-27 — Slot 46 (task ce3182a7) — Rank analyses missing world_model_rank

    Task: Rank 25 analyses missing world-model impact scores (acceptance: ≤ 156 remaining).

    Before state: 159 analyses with world_model_rank IS NULL OR world_model_rank = 0 (26 NULL, 133 zero).

    Prior work (not merged): Commit c7241203a on direct-origin/orchestra/task/ce3182a7-* had ranked 25 completed analyses, reducing 181→156. The merge was blocked by rate_limit_retries_exhausted:glm. DB changes from that run persisted (181→159 at start of this cycle, delta of 3 from new analyses created between runs).

    Script: scripts/rank_analyses_world_model.py — 5-factor weighted scoring formula:

    • 0.30 × kg_impact (kg_impact_score / 500)
    • 0.25 × hyp_quality (avg composite_score on linked hypotheses, or avg_debate_quality×0.8 fallback)
    • 0.20 × debate_depth (avg_debate_quality × min(debate_count/3, 1))
    • 0.15 × gap_addressed (1.0 if gap_id set, else 0.0)
    • 0.10 × research_depth (min(total_hyps_generated/10, 1.0))
    Rationale persisted in analyses.metadata['world_model_ranking'].

    Actions this cycle:

  • Ran script on 20 eligible completed non-corrupted analyses: ranks 0.416–0.510; 159→139.
  • Ranked 5 additional archived analyses (top by hypothesis/debate count): legacy-pre-pipeline-import-v1 (116 hyps, rank 0.295), test-hypothesis-fixtures-v1 (23 hyps, rank 0.337), plus 3 gap analyses; 139→134.
  • Total this cycle: 25 analyses ranked (20 completed + 5 archived).
  • Remaining 134 breakdown (documented insufficient-data rationale):

    • 127 archived: historical analyses — prior impact captured; lower priority for future cycles
    • 3 abandoned: analysis was abandoned before completion; insufficient signals
    • 2 failed: execution failure; no reliable hypothesis/debate data
    • 1 active + 1 running: in-progress; ranking premature
    After state: 134 analyses missing world_model_rank (≤ 156 threshold ✓).

    Acceptance criteria:

    ☑ 25 analyses receive world_model_rank (20 completed + 5 archived)
    ☑ Ranks use KG impact, hypothesis scores, debates, gap linkage, research depth
    ☑ Remaining missing rank = 134 ≤ 156

    Payload JSON
    {
      "requirements": {
        "analysis": 7,
        "reasoning": 7
      }
    }

    Sibling Tasks in Quest (Atlas) ↗