[Atlas] Gap closure pipeline — match 500 open gaps to accumulated evidence and resolve open

← Atlas
**Problem:** SciDEX has 3,545 knowledge gaps, of which 3,153 are still "open". Only 12 have ever been marked "resolved" (0.34% resolution rate). With 1,873 hypotheses, 835 debate sessions, and 29,503 papers in the system, vast amounts of evidence have accumulated that directly address many of these gaps — but no pipeline exists to match evidence to gaps and close them. **Goal:** Build and run a gap closure pipeline that systematically resolves 500+ gaps by matching them against accumulated hypotheses, debates, and papers. **Implementation:** 1. Pull all 3,153 open gaps: `SELECT id, title, description, domain FROM knowledge_gaps WHERE status = 'open' LIMIT 3153` 2. For each gap, use LLM embedding similarity or keyword matching to find: - Hypotheses that address the gap (JOIN on gap_id or semantic similarity) - Debate sessions whose question text overlaps with gap description - Papers (via search_vector) whose abstracts address the gap topic 3. Scoring: a gap is "resolvable" if: hypothesis_matches >= 1 AND (debate_matches >= 1 OR paper_matches >= 2) 4. For resolvable gaps: UPDATE knowledge_gaps SET status = 'resolved', resolution_summary = , resolved_at = NOW() WHERE id = 5. For partially addressed: UPDATE status = 'partially_addressed' where hypothesis_matches >= 1 but debate coverage thin 6. Target: resolve 500+ gaps (from 12 resolved to 512+) 7. Log: which gaps resolved, which hypotheses resolved them, resolution distribution by domain **Use `scidex.core.database.get_db()`. Use `llm.py` for LLM-based similarity scoring.** **Expected outcome:** 500+ gaps moved from 'open' to 'resolved' or 'partially_addressed'. Resolution rate rises from 0.34% to ~15%+. Gap list becomes actionable signal instead of noise.

Completion Notes

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[Senate] Create ambitious quest task generator spec + 6 strategic tasks [task:80ffb77b-8391-493c-8644-37086c8e2e3c] (#1211)2026-04-28

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