D16.1 priority: Hypotheses h-51e7234f (APOE Autophagy, 0.80), h-3d545f4e (Butyrate Microglia, 0.79), h-5d943bfc (Proteostasis APOE, 0.745), h-d4f71a6b (TG2 Inhibition, 0.725), h-f3fb3b91 (TLR4 Modulation, 0.71) all lack pathway_diagram, clinical_trials, evidence_for, evidence_against. Enrich them.
## REOPENED TASK — CRITICAL CONTEXT
This task was previously marked 'done' but the audit could not verify
the work actually landed on main. The original work may have been:
- Lost to an orphan branch / failed push
- Only a spec-file edit (no code changes)
- Already addressed by other agents in the meantime
- Made obsolete by subsequent work
**Before doing anything else:**
1. **Re-evaluate the task in light of CURRENT main state.** Read the
spec and the relevant files on origin/main NOW. The original task
may have been written against a state of the code that no longer
exists.
2. **Verify the task still advances SciDEX's aims.** If the system
has evolved past the need for this work (different architecture,
different priorities), close the task with reason "obsolete: "
instead of doing it.
3. **Check if it's already done.** Run `git log --grep=''`
and read the related commits. If real work landed, complete the
task with `--no-sha-check --summary 'Already done in '`.
4. **Make sure your changes don't regress recent functionality.** Many
agents have been working on this codebase. Before committing, run
`git log --since='24 hours ago' -- ` to see what
changed in your area, and verify you don't undo any of it.
5. **Stay scoped.** Only do what this specific task asks for. Do not
refactor, do not "fix" unrelated issues, do not add features that
weren't requested. Scope creep at this point is regression risk.
If you cannot do this task safely (because it would regress, conflict
with current direction, or the requirements no longer apply), escalate
via `orchestra escalate` with a clear explanation instead of committing.
Completion Notes
Auto-completed by supervisor after successful deploy to main
Git Commits (2)
[Exchange] Document task 0ba4bce7: enrich already on main via 7de1a879a [task:0ba4bce7-a8f5-459f-8b20-797e10e95464]2026-04-13
[Exchange] Enrich top 5 unenriched hypotheses with pathway diagrams, evidence, clinical trials2026-04-02
Spec File
[Exchange] Enrich top 5 unenriched hypotheses with pathway diagrams, evidence, clinical trials
2026-04-13T20:45:00 — Verified on main DB: all 5 hypotheses already enriched (pathway_diagram: 1300-1900 chars, evidence_for: 7000-16000 chars, evidence_against: 1700-3500 chars, clinical_trials: 1000-1100 chars each). Mermaid diagrams, PubMed evidence with PMIDs/sources/years/abstracts, and NCT clinical trials all present. Task completed via prior work that landed on main.
2026-04-13T21:00:00 — Confirmed via API: all 5 hypotheses have pathway_diagram (1300-1505 chars), evidence_for (list of PubMed citations with claim/pmid/source/year/strength), evidence_against (list with same structure), clinical_trials (1000-1120 chars, NCT numbers). Commit 7de1a879a landed on main on Apr 2. Task is complete.