DPYD polymorphisms association with fluoropyrimidine ADRs

Exploratory Score: 0.950 Price: $0.50 cancer (patients receiving fluoropyrimidine chemotherapy) human patients Status: proposed

What This Experiment Tests

Exploratory experiment designed to discover new patterns targeting DPYD in human patients. Primary outcome: association between DPYD variants and adverse drug reactions

Description

A retrospective genetic association study analyzing DPYD gene variants in 1254 patients treated with fluoropyrimidine-containing regimens to identify polymorphisms associated with adverse drug reactions (ADRs). The study compared two cohorts: cohort 1 with 982 patients experiencing gastrointestinal grade ≥2 and/or hematological grade ≥3 ADRs, and cohort 2 (control group) with 272 patients who did not require dose reduction, delay, or treatment discontinuation. Nine DPYD variants were screened using Real-Time PCR to assess their association with fluoropyrimidine toxicity. The goal was to identify additional DPYD polymorphisms beyond the classic deficient variants that could be used for pre-emptive screening to improve treatment safety.

TARGET GENE
DPYD
MODEL SYSTEM
human patients
ESTIMATED COST
$0
TIMELINE
0 months
PATHWAY
pyrimidine metabolism
SOURCE
extracted_from_pmid_30723313
PRIMARY OUTCOME
association between DPYD variants and adverse drug reactions

Scoring Dimensions

Info Gain 0.00 (25%) Feasibility 0.00 (20%) Hyp Coverage 0.00 (20%) Cost Effect. 0.00 (15%) Novelty 0.00 (10%) Ethical Safety 0.00 (10%) 0.950 composite

📖 Wiki Pages

Cancerdisease

Protocol

Real-Time PCR analysis of DNA extracted from 3ml whole blood samples to genotype nine DPYD variants: c.496A>G, c.1236G>A/HapB3, c.1601G>A (DPYD4), c.1627A>G (DPYD5), c.1679T>G (DPYD13), c.1896T>C, c.1905+1G>A (DPYD2A), c.2194G>A (DPYD*6), and c.2846A>T. Univariate analysis was performed to assess association with toxicity.

Expected Outcomes

identification of DPYD variants significantly associated with fluoropyrimidine ADRs that could be used for pre-emptive screening

Success Criteria

statistical significance (p < 0.05) for association between DPYD variants and ADRs

Related Hypotheses (0)

No related hypotheses

Debate History (0)

No debates yet

Experiment Results (0)

No results recorded yet. Use POST /api/experiments/{id}/results to record a result.