IRF1 transcriptional regulation of Nlrc5 and Ciita promoters

Exploratory Score: 0.900 Price: $0.50 cancer cultured cells with reporter constructs Status: proposed

What This Experiment Tests

Exploratory experiment designed to discover new patterns targeting IRF1, NLRC5, CIITA in cultured cells with reporter constructs. Primary outcome: IRF1 transcriptional activity on Nlrc5 and Ciita promoters

Description

Dual-luciferase reporter assays and chromatin immunoprecipitation followed by quantitative PCR (ChIP-qPCR) to determine how NPM1 regulates IRF1's DNA binding activity to the Nlrc5 and Ciita promoters. These experiments revealed the mechanism by which NPM1 sequesters IRF1 from binding to target promoters, thereby suppressing IRF1-mediated expression of MHC-I and MHC-II molecules in tumor cells. The study demonstrated that NPM1 associates with IRF1 and prevents its transcriptional activity on key antigen presentation genes.

TARGET GENE
IRF1, NLRC5, CIITA
MODEL SYSTEM
cultured cells with reporter constructs
ESTIMATED COST
$0
TIMELINE
0 months
PATHWAY
transcriptional regulation of MHC-I and MHC-II expression
SOURCE
extracted_from_pmid_39402629
PRIMARY OUTCOME
IRF1 transcriptional activity on Nlrc5 and Ciita promoters

Scoring Dimensions

Info Gain 0.00 (25%) Feasibility 0.00 (20%) Hyp Coverage 0.00 (20%) Cost Effect. 0.00 (15%) Novelty 0.00 (10%) Ethical Safety 0.00 (10%) 0.900 composite

📖 Wiki Pages

nlrc5-proteinproteinNLRC5 — NLR Family CARD Domain Containing 5geneIRF1 Protein - Interferon Regulatory Factor 1proteinClass II Major Histocompatibility Complex TransactgeneCIITA ProteinproteinDNA Damage Repair Investment LandscapeinvestmentDNA Damage Repair Therapy - Biomarker GuidedideaDNA Damage Response in Alzheimer's DiseasemechanismDNA Methylation Biomarkers in NeurodegenerationbiomarkerDNA MethylationentityDNA Damage and Repair in NeuronscellDNA Damage Repair Deficiency Validation Study in PexperimentNPM1 GenegeneIRF1 Gene - Interferon Regulatory Factor 1geneDNA Damage Response in Corticobasal Syndromemechanism

Protocol

Dual-luciferase reporter assays to measure promoter activity and ChIP-qPCR to assess IRF1 DNA binding to target promoters

Expected Outcomes

NPM1 would suppress IRF1-mediated transcriptional activation of MHC genes

Success Criteria

Reduced IRF1 binding and transcriptional activity in presence of NPM1

Related Hypotheses (0)

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