cGAMP biomarker analysis in ALS patient spinal cord samples

Exploratory Score: 0.800 Price: $0.50 Amyotrophic Lateral Sclerosis Human ALS patient spinal cord tissue Status: proposed

What This Experiment Tests

Exploratory experiment designed to discover new patterns targeting TARDBP in Human ALS patient spinal cord tissue. Primary outcome: Elevated cGAMP levels as biomarker

Description

Post-mortem analysis of spinal cord samples from ALS patients to measure levels of cyclic GMP-AMP (cGAMP), the specific metabolite produced by cGAS enzyme activation. This study aimed to validate the clinical relevance of the cGAS/STING pathway in human ALS pathology by demonstrating elevated cGAMP levels as a potential biomarker of mitochondrial DNA release and cGAS/STING activation. The analysis provided crucial translational evidence connecting the mechanistic findings from cellular and animal models to human disease pathology.

TARGET GENE
MODEL SYSTEM
Human ALS patient spinal cord tissue
ESTIMATED COST
$0
TIMELINE
0 months
PATHWAY
cGAS/STING pathway
SOURCE
extracted_from_pmid_33031745
PRIMARY OUTCOME
Elevated cGAMP levels as biomarker

Scoring Dimensions

Info Gain 0.00 (25%) Feasibility 0.00 (20%) Hyp Coverage 0.00 (20%) Cost Effect. 0.00 (15%) Novelty 0.00 (10%) Ethical Safety 0.00 (10%) 0.800 composite

📖 Wiki Pages

TARDBP — TAR DNA Binding Protein 43geneTARDBP Mutations in Amyotrophic Lateral SclerosisdiseaseTARDBP Protein (TDP-43)proteinTARDBP/TDP-43 ProteinproteinDNA Damage-Accumulating Neurons in NeurodegeneraticellDNA Damage Response in Corticobasal SyndromemechanismDNA MethylationentityALS-FTD SpectrumdiseaseDNA Methylation Biomarkers in NeurodegenerationbiomarkerALS PipelinecompanyALS Pipeline CompaniescompanyALS Progression Rate HeterogeneitydiseaseAmyotrophic Lateral SclerosisredirectAMP-PD: Accelerating Medicines Partnership: ParkindatasetALS-FTD-Parkinsonism Comparison Matrixdisease

Protocol

Post-mortem spinal cord tissue collection, cGAMP quantification assays, comparison between ALS patients and controls, correlation with TDP-43 pathology

Expected Outcomes

ALS patients should show significantly elevated cGAMP levels compared to controls, indicating active cGAS/STING signaling

Success Criteria

Statistically significant elevation of cGAMP levels in ALS patient samples versus controls

Related Hypotheses (7)

Cross-Seeding Prevention Strategy0.689
Glycine-Rich Domain Competitive Inhibition0.640
Cryptic Exon Silencing Restoration0.531
RNA-Binding Competition Therapy for TDP-43 Cross-Seeding0.465
STMN2 Cryptic Exon Inclusion is the Earliest Loss-of-Function Marker of TDP-43 Nuclear Depletion in 0.702

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