entity

ATAC-seq accessibility

Entity Detail — Knowledge Graph Node

Understanding Entity Pages

This page aggregates everything SciDEX knows about ATAC-seq accessibility: its mechanistic relationships (Knowledge Graph edges), hypotheses targeting it, analyses mentioning it, and supporting scientific papers. The interactive graph below shows its immediate neighbors. All content is AI-synthesized from peer-reviewed literature.

0Connections
2Hypotheses
0Analyses
0Outgoing
0Incoming
0Experiments
0Debates

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Outgoing (0)

TargetRelationTypeStr
No outgoing edges

Incoming (0)

SourceRelationTypeStr
No incoming edges

Targeting Hypotheses (2)

Hypotheses where this entity is a therapeutic target

HypothesisScoreDiseaseAnalysis
ATAC-seq accessibility separates causal from compensatory st 0.738 neurodegeneration Are DNA methylation changes in neurodege
ATAC-seq accessibility separates causal from compensatory st 0.738 neurodegeneration Are age-related DNA methylation changes

Mentioning Analyses (0)

Scientific analyses that reference this entity

No analyses mention this entity

Experiments (0)

Experimental studies targeting or related to this entity

ExperimentTypeDiseaseScoreFeasibilityModelStatusEst. Cost
No experiments found

Related Papers (20)

Scientific publications cited in analyses involving this entity

Title & PMIDAuthorsJournalYearCitations
TDP-43 Triggers Mitochondrial DNA Release via mPTP to Activate cGAS/STING in ALS [PMID:33031745] Yu CH, Davidson S, Harapas CR, Hilton JB Cell 2020 2
Chromatin accessibility profiling by ATAC-seq. [PMID:35478247] Grandi, Modi, Kampman, Corces Nature protocols 2022 0
Chromatin accessibility profiling by ATAC-seq. [PMID:35478247] Unknown Nature protocols 2022 0
TDP-43 Triggers Mitochondrial DNA Release via mPTP to Activate cGAS/STING in ALS [PMID:33031745] Yu CH, Davidson S, Harapas CR, Hilton JB Cell 2020 0
DNA Damage, Neurodegeneration, and Synaptic Plasticity. [PMID:27313899] Merlo, Cuchillo-Ibañez, Parlato, Ra Neural plasticity 2018 0
An improved ATAC-seq protocol reduces background and enables interrogation of fr [PMID:28846090] Corces, Trevino, Hamilton, Greenside, Si Nature methods 2017 0
An improved ATAC-seq protocol reduces background and enables interrogation of fr [PMID:28846090] Unknown Nature methods 2017 0
ATAC-seq: A Method for Assaying Chromatin Accessibility Genome-Wide. [PMID:25559105] Buenrostro, Wu, Chang, Greenleaf Current protocols in molecular 2016 0
ATAC-seq: A Method for Assaying Chromatin Accessibility Genome-Wide. [PMID:25559105] Unknown Current protocols in molecular 2016 0
DNA Damage, Neurodegeneration, and Synaptic Plasticity. [PMID:27313899] Unknown Neural Plast 2016 0
Single-cell chromatin accessibility reveals principles of regulatory variation. [PMID:26083756] Unknown Nature 2015 0
Single-cell chromatin accessibility reveals principles of regulatory variation. [PMID:26083756] Buenrostro, Wu, Litzenburger, Ruff, Gonz Nature 2015 0
Human endogenous retrovirus-K contributes to motor neuron disease. [PMID:26424568] Li W, Lee MH, Henderson L, Tyagi R, Bach Science translational medicine 2015 0
Human endogenous retrovirus-K contributes to motor neuron disease. [PMID:26424568] Li W, Lee MH, Henderson L, Tyagi R, Bach Science translational medicine 2015 0
Transposition of native chromatin for fast and sensitive epigenomic profiling of [PMID:24097267] Buenrostro, Giresi, Zaba, Chang, Greenle Nature methods 2014 0
DNA damage and its links to neurodegeneration. [PMID:25033177] Madabhushi, Pan, Tsai Neuron 2014 0
DNA damage and its links to neurodegeneration. [PMID:25033177] Unknown Neuron 2014 0
Transposition of native chromatin for fast and sensitive epigenomic profiling of [PMID:24097267] Unknown Nature methods 2014 0
DNA repair deficiency and neurodegeneration. [PMID:17700067] Unknown Cell cycle (Georgetown, Tex.) 2007 0
DNA repair deficiency and neurodegeneration. [PMID:17700067] Katyal, McKinnon Cell cycle (Georgetown, Tex.) 2007 0

Debates (0)

Multi-agent debates referencing this entity

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Related Research

Hypotheses and analyses mentioning ATAC-seq accessibility in their description or question text

No additional research found