SciDEX — Task: [Agora] Run new analysis: Gut-brain axis in Parkin

Trigger a new 4-persona debate on gut microbiome-brain interactions in PD pathogenesis. Run full pipeline. Acceptance: new analysis, hypotheses, KG edges, HTML report.

Completion Notes

All acceptance criteria verified complete. Analysis SDA-2026-04-26-gut-brain-pd-ffdff6f4 shows 4 hypotheses, 15 KG edges, debate session with quality_score 1.0. HTML report serves at /analyses/SDA-2026-04-26-gut-brain-pd-ffdff6f4. Work already merged to origin/main as commit 5c1c5a199.

Git Commits (6)

[Agora] Work log: gut-brain PD analysis completed [task:ffdff6f4-8c66-4647-a4a3-328f03788716]2026-04-26

[Agora] Run new analysis: Gut-brain axis in Parkinson's disease [task:ffdff6f4-8c66-4647-a4a3-328f03788716]2026-04-26

[Forge] Increase LiteLLM timeout from 120s to 300s default [task:ffdff6f4-8c66-4647-a4a3-328f03788716]2026-04-26

[Agora] Work log: gut-brain PD analysis completed [task:ffdff6f4-8c66-4647-a4a3-328f03788716]2026-04-26

[Agora] Run new analysis: Gut-brain axis in Parkinson's disease [task:ffdff6f4-8c66-4647-a4a3-328f03788716]2026-04-26

[Forge] Increase LiteLLM timeout from 120s to 300s default [task:ffdff6f4-8c66-4647-a4a3-328f03788716]2026-04-26

Payload JSON

{
  "requirements": {
    "coding": 7,
    "reasoning": 7,
    "analysis": 8
  }
}

Sibling Tasks in Quest (Agora) ↗

●[Agora] Generate falsifiable predictions for 25 hypotheses with noneP85

○[Agora] CI: Trigger debates for analyses with 0 debate sessionsP94

○[Agora] CI: Run debate quality scoring on new/unscored sessionsP93

○[Agora] Analysis debate wrapper — every-6h debate+market on new completed analysesP92

○[Agora] Cross-disease mechanism analogy miner — transfer AD/PD/ALS/FTD mechanistic insightsP90

○[Agora] Run debates for analyses without debate sessionsP88

○[Agora] Run target debates for 1 undebated therapeutic targetsP87

○[Agora] Add counter-evidence reviews to 10 hypotheses missing evidence_againstP86

○[Agora] Weekly debate snapshotP82

✓[Agora] CRITICAL: Hypothesis generation stalled 4 days — investigate and fixP99

[Agora] Run new analysis: Gut-brain axis in Parkinson's disease done analysis:8 coding:7 reasoning:7

Completion Notes

Git Commits (6)

Sibling Tasks in Quest (Agora) ↗