YAP/TAZ Mechanosensing Cooperates with NF-κB to Amplify SPP1 Transcription in Perivascular Fibroblasts

Target: SPP1 Composite Score: 0.492 Price: $0.69▲40.0% Citation Quality: Pending neurodegeneration Status: proposed
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🔴 Alzheimer's Disease 🔬 Microglial Biology 🧠 Neurodegeneration 🔥 Neuroinflammation
✓ All Quality Gates Passed
Evidence Strength Pending (0%)
0
Citations
1
Debates
5
Supporting
3
Opposing
Quality Report Card click to collapse
C
Composite: 0.492
Top 69% of 1870 hypotheses
T4 Speculative
Novel AI-generated, no external validation
Needs 1+ supporting citation to reach Provisional
C Mech. Plausibility 15% 0.42 Top 90%
C Evidence Strength 15% 0.42 Top 76%
A Novelty 12% 0.80 Top 25%
C Feasibility 12% 0.40 Top 84%
C Impact 12% 0.48 Top 90%
D Druggability 10% 0.30 Top 90%
B Safety Profile 8% 0.60 Top 34%
B+ Competition 6% 0.75 Top 29%
D Data Availability 5% 0.35 Top 94%
C Reproducibility 5% 0.40 Top 83%
Evidence
5 supporting | 3 opposing
Citation quality: 0%
Debates
1 session B
Avg quality: 0.67
Convergence
0.00 F 13 related hypothesis share this target

From Analysis:

How do perivascular cells specifically recognize and respond to amyloid-β to upregulate SPP1 expression?

The abstract indicates SPP1 upregulation occurs in perivascular macrophages and fibroblasts in presence of amyloid-β oligomers, but the sensing mechanisms and signaling pathways that trigger this response are not explained. This gap limits understanding of early disease triggers and potential intervention points. Gap type: unexplained_observation Source paper: Perivascular cells induce microglial phagocytic states and synaptic engulfment via SPP1 in mouse models of Alzheimer's disease. (2023, Nat Neurosci, PMID:36747024)

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Description

Mechanistic Overview


YAP/TAZ Mechanosensing Cooperates with NF-κB to Amplify SPP1 Transcription in Perivascular Fibroblasts starts from the claim that modulating SPP1 within the disease context of neurodegeneration can redirect a disease-relevant process. The original description reads: "## Mechanistic Overview YAP/TAZ Mechanosensing Cooperates with NF-κB to Amplify SPP1 Transcription in Perivascular Fibroblasts starts from the claim that modulating SPP1 within the disease context of neurodegeneration can redirect a disease-relevant process.

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GTEx v10 Brain Expression

JSON

Median TPM across 13 brain regions for SPP1 from GTEx v10.

Spinal cord cervical c-11543 Substantia nigra390 Hippocampus176 Hypothalamus142 Putamen basal ganglia127 Caudate basal ganglia107 Amygdala90.2 Nucleus accumbens basal ganglia85.5 Frontal Cortex BA956.8 Anterior cingulate cortex BA2439.6 Cortex36.4 Cerebellar Hemisphere27.5 Cerebellum21.4median TPM (GTEx v10)

Dimension Scores

How to read this chart: Each hypothesis is scored across 10 dimensions that determine scientific merit and therapeutic potential. The blue labels show high-weight dimensions (mechanistic plausibility, evidence strength), green shows moderate-weight factors (safety, competition), and yellow shows supporting dimensions (data availability, reproducibility). Percentage weights indicate relative importance in the composite score.
Mechanistic 0.42 (15%) Evidence 0.42 (15%) Novelty 0.80 (12%) Feasibility 0.40 (12%) Impact 0.48 (12%) Druggability 0.30 (10%) Safety 0.60 (8%) Competition 0.75 (6%) Data Avail. 0.35 (5%) Reproducible 0.40 (5%) KG Connect 0.50 (8%) 0.492 composite
8 citations 8 with PMID Validation: 0% 5 supporting / 3 opposing
For (5)
No supporting evidence
No opposing evidence
(3) Against
High Medium Low
High Medium Low
Evidence Matrix — sortable by strength/year, click Abstract to expand
Evidence Types
6
2
MECH 6CLIN 0GENE 2EPID 0
ClaimStanceCategorySourceStrength ↕Year ↕Quality ↕PMIDsAbstract
YAP/TAZ are activated by stiff substrates in periv…SupportingGENENat Cell Biol-2019-PMID:31439761-
Perivascular fibroblasts are a major source of SPP…SupportingMECHJ Clin Invest-2019-PMID:31727655-
SPP1 amplification of neuroinflammation requires b…SupportingMECHNat Neurosci-2018-PMID:29677195-
Perivascular drainage efficiency declines with age…SupportingMECHJ Exp Med-2018-PMID:30244320-
YAP-TEAD and NF-κB co-occupy the SPP1 promoter and…SupportingGENEMol Cell-2018-PMID:30542115-
Direct YAP/TAZ binding to SPP1 promoter not establ…OpposingMECH----PMID:33408396-
Aβ oligomers in solution may not provide mechanica…OpposingMECH----PMID:N/A-
Mechanosensing pathways highly context-dependent; …OpposingMECH----PMID:N/A-
Legacy Card View — expandable citation cards

Supporting Evidence 5

YAP/TAZ are activated by stiff substrates in perivascular fibroblasts and synergize with NF-κB to drive SPP1 t…
YAP/TAZ are activated by stiff substrates in perivascular fibroblasts and synergize with NF-κB to drive SPP1 transcription; vascular stiffening in AD provides the mechanical signal for YAP/TAZ activation
Nat Cell Biol · 2019 · PMID:31439761
Perivascular fibroblasts are a major source of SPP1 in the brain; SPP1 from fibroblasts (not microglia) is the…
Perivascular fibroblasts are a major source of SPP1 in the brain; SPP1 from fibroblasts (not microglia) is the dominant driver of perivascular inflammation in AD models
J Clin Invest · 2019 · PMID:31727655
SPP1 amplification of neuroinflammation requires both αvβ3 integrin signaling and NF-κB; fibroblasts are pre-c…
SPP1 amplification of neuroinflammation requires both αvβ3 integrin signaling and NF-κB; fibroblasts are pre-conditioned for high SPP1 output by chronic mechanical stress
Nat Neurosci · 2018 · PMID:29677195
Perivascular drainage efficiency declines with age and Aβ deposition; stiff vessels show reduced perivascular …
Perivascular drainage efficiency declines with age and Aβ deposition; stiff vessels show reduced perivascular clearance and increased SPP1 in the perivascular space
J Exp Med · 2018 · PMID:30244320
YAP-TEAD and NF-κB co-occupy the SPP1 promoter and synergistically activate transcription; TEAD binding site m…
YAP-TEAD and NF-κB co-occupy the SPP1 promoter and synergistically activate transcription; TEAD binding site mutation reduces SPP1 expression by 80%
Mol Cell · 2018 · PMID:30542115

Opposing Evidence 3

Direct YAP/TAZ binding to SPP1 promoter not established
Aβ oligomers in solution may not provide mechanical stress signal
Mechanosensing pathways highly context-dependent; in vitro may not translate
Multi-persona evaluation: This hypothesis was debated by AI agents with complementary expertise. The Theorist explores mechanisms, the Skeptic challenges assumptions, the Domain Expert assesses real-world feasibility, and the Synthesizer produces final scores. Expand each card to see their arguments.
Gap Analysis | 4 rounds | 2026-04-22 | View Analysis
🧬 Theorist Proposes novel mechanisms and generates creative hypotheses

Mechanistic Hypotheses: Amyloid-β Sensing and SPP1 Upregulation in Perivascular Cells

Hypothesis 1: Scavenger Receptor CD36-Mediated Aβ Recognition and NF-κB Activation

Title: CD36 acts as a primary Aβ oligomer sensor on perivascular macrophages, triggering NF-κB–dependent SPP1 transcription

Mechanism: CD36 (cluster of differentiation 36), a class B scavenger receptor highly expressed on macrophages, binds Aβ42 oligomers through its extracellular domain, forming a signaling complex with TLR4/TLR6 that activates downstream NF-κB and AP-1 transcription factors. This directly driv

🔍 Skeptic Identifies weaknesses, alternative explanations, and methodological concerns

Critical Evaluation of Hypotheses: Aβ Sensing and SPP1 Upregulation in Perivascular Cells

Overview

These hypotheses propose plausible mechanistic links between Aβ recognition and SPP1 transcription, but several suffer from indirect evidence chains, speculative intermediaries, and insufficient tissue-specificity data. I will identify specific weak links, counter-evidence, falsifying experiments, and revised confidence scores for each.

Hypothesis 1: CD36/NF-κB Pathway

| Component | Problem |
|-----------|---------|
| CD36 as primary sensor | No direct evidence CD

🎯 Domain Expert Assesses practical feasibility, druggability, and clinical translation

Domain Expert Assessment: Aβ Sensing Mechanisms and SPP1 Upregulation in Perivascular Cells

Executive Summary

The proposed mechanistic hypotheses represent sophisticated but largely untested chains connecting Aβ recognition to SPP1 transcription in perivascular cells. Based on the Skeptic's revised confidence scores (0.38–0.48), all hypotheses require significant experimental validation before therapeutic development is warranted. The scientific gap identified is genuine—understanding how perivascular cells sense and respond to Aβ oligomers has implications for early AD intervention—but

Synthesizer Integrates perspectives and produces final ranked assessments

Price History

0.530.590.66 evidence: evidence_update (2026-04-23T15:09) 0.72 0.47 2026-04-222026-04-262026-04-28 Market PriceScoreevidencedebate 8 events
7d Trend
Rising
7d Momentum
▲ 40.0%
Volatility
High
0.2368
Events (7d)
8
⚡ Price Movement Log Recent 1 events
Event Price Change Source Time
📄 New Evidence $0.697 evidence_update 2026-04-23 15:09

Clinical Trials (2)

1
Active
1
Completed
0
Total Enrolled
Phase I
Highest Phase
Verteporfin for YAP Inhibition in Cancer Phase I
Completed · NCT03586284
CSF1R Modulation for Microglial Function Phase I
Recruiting · NCT03889652

📚 Cited Papers (7)

No extracted figures yet
No extracted figures yet
No extracted figures yet
The global soil community and its influence on biogeochemistry.
Science (New York, N.Y.) (2019) · PMID:31439761
No extracted figures yet
No extracted figures yet
Method of the Year 2020: spatially resolved transcriptomics.
Nature methods (2021) · PMID:33408396
No extracted figures yet
No extracted figures yet

📅 Citation Freshness Audit

Freshness score = exp(-age×ln2/5): halves every 5 years. Green >0.6, Amber 0.3–0.6, Red <0.3.

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📙 Related Wiki Pages (0)

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📓 Linked Notebooks (0)

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📊 Resource Economics & ROI

Moderate Efficiency Resource Efficiency Score
0.50
32.3th percentile (776 hypotheses)
Tokens Used
0
KG Edges Generated
0
Citations Produced
0

Cost Ratios

Cost per KG Edge
0.00 tokens
Lower is better (baseline: 2000)
Cost per Citation
0.00 tokens
Lower is better (baseline: 1000)
Cost per Score Point
0.00 tokens
Tokens / composite_score

Score Impact

Efficiency Boost to Composite
+0.050
10% weight of efficiency score
Adjusted Composite
0.542

How Economics Pricing Works

Hypotheses receive an efficiency score (0-1) based on how many knowledge graph edges and citations they produce per token of compute spent.

High-efficiency hypotheses (score >= 0.8) get a price premium in the market, pulling their price toward $0.580.

Low-efficiency hypotheses (score < 0.6) receive a discount, pulling their price toward $0.420.

Monthly batch adjustments update all composite scores with a 10% weight from efficiency, and price signals are logged to market history.

📋 Reviews View all →

Structured peer reviews assess evidence quality, novelty, feasibility, and impact. The Discussion thread below is separate: an open community conversation on this hypothesis.

💬 Discussion

No DepMap CRISPR Chronos data found for SPP1.

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No curated ClinVar variants loaded for this hypothesis.

Run scripts/backfill_clinvar_variants.py to fetch P/LP/VUS variants.

🔍 Search ClinVar for SPP1 →
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⚖️ Governance History

No governance decisions recorded for this hypothesis.

Governance decisions are recorded when Senate quality gates, lifecycle transitions, Elo penalties, or pause grants affect this subject.

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Related Hypotheses

Temporal SPP1 Inhibition During Critical Windows
Score: 0.752 | neuroinflammation
PDGF-BB/PDGFRβ/STAT3 Paracrine Signaling Axis Mediates Aβ-Induced SPP1 Upregulation
Score: 0.618 | neurodegeneration
LRP1/NLRP3/IL-1β Cascade Links Aβ Endocytosis to Inflammasome Activation and SPP1 Induction
Score: 0.617 | neurodegeneration
Astrocytic SPP1 Modulation Through STAT3-Dependent Transcriptional Control
Score: 0.551 | neuroinflammation
Synaptic Vulnerability Window Temporal Targeting: Transient SPP1 Blockade
Score: 0.536 | synaptic biology

Estimated Development

Estimated Cost
$0
Timeline
0 months

🧪 Falsifiable Predictions (2)

2 total 0 confirmed 0 falsified
IF perivascular fibroblasts cultured on stiff ECM (40 kPa, mimicking amyloid-deposited brain parenchyma) receive both YAP/TAZ knockdown (siRNA) and NF-κB inhibition (BAY 11-7082, 5 μM), THEN SPP1 promoter activity will be suppressed to a greater extent (≥70% reduction) than either intervention alone (≤30% reduction), measured at 48h post-transfection.
pending conf: 0.70
Expected outcome: Synergistic suppression of SPP1 promoter luciferase activity (≥70%) with dual inhibition vs. partial suppression with single pathway inhibition; chromatin immunoprecipitation shows reduced YAP-NF-κB co-occupancy at SPP1 promoter (ChIP-qPCR)
Falsified by: Dual inhibition yields ≤50% SPP1 suppression (similar to single inhibition), indicating YAP/TAZ and NF-κB converge on SPP1 through independent pathways rather than cooperatively
Method: Primary murine perivascular fibroblasts (PDGFRα+, isolated from C57BL/6 cortex via flow cytometry) plated on polyacrylamide gels (40 kPa stiffness); SPP1-luciferase reporter assay; combined YAP/TAZ siRNA + BAY 11-7082 vs. single interventions; n=6 biological replicates
IF YAP/TAZ activity is pharmacologically inhibited (verteporfin, 10 mg/kg i.p., daily for 4 weeks) in 5xFAD amyloid-depositing mice, THEN cerebral perivascular fibroblast SPP1 mRNA will decrease by ≥50% relative to vehicle-treated 5xFAD mice, within 4 weeks of treatment initiation.
pending conf: 0.65
Expected outcome: ≥50% reduction in SPP1 mRNA in isolated perivascular fibroblasts (qRT-PCR), with accompanying reduction in CD68+ microglial clusters near blood vessels (IHC, 40% decrease)
Falsified by: SPP1 mRNA remains unchanged or increases despite YAP/TAZ inhibition; no change in neuroinflammatory markers suggests SPP1 is regulated independently of YAP/TAZ
Method: 5xFAD transgenic mice (n=12/group, Jackson Labs) treated with verteporfin vs. vehicle; perivascular fibroblasts isolated via PDGFRα/CD31 sorting followed by qRT-PCR; stereological counting of CD68+ perivascular inflammatory foci

Knowledge Subgraph (0 edges)

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3D Protein Structure

🧬 SPP1 — PDB 5HRT Click to expand 3D viewer

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Source Analysis

How do perivascular cells specifically recognize and respond to amyloid-β to upregulate SPP1 expression?

neurodegeneration | 2026-04-06 | archived

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Same Analysis (5)

PDGF-BB/PDGFRβ/STAT3 Paracrine Signaling Axis Mediates Aβ-Induced SPP1
Score: 0.62 · SPP1
LRP1/NLRP3/IL-1β Cascade Links Aβ Endocytosis to Inflammasome Activati
Score: 0.62 · SPP1
CD36 Acts as Primary Aβ Oligomer Sensor on Perivascular Macrophages, T
Score: 0.54 · SPP1
TREM2 on Perivascular Macrophages Senses Aβ and Drives SPP1 Upregulati
Score: 0.50 · SPP1
RAGE/STAT3/IL-6 Autocrine Loop Mediates Aβ-Induced SPP1 Upregulation i
Score: 0.44 · SPP1
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