Anti-CD47/SIRPα Checkpoint Therapy to Enhance Phagocytic Clearance

Target: CD47/SIRPα axis; target: CD47 on plaques/neurons Composite Score: 0.510 Price: $0.52▲1.2% Citation Quality: Pending immunomics Status: proposed
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⚠ Missing Evidence⚠ Thin Description⚠ Low Validation Senate Quality Gates →
Evidence Strength Pending (0%)
0
Citations
1
Debates
4
Supporting
4
Opposing
Quality Report Card click to collapse
C+
Composite: 0.510
Top 65% of 1833 hypotheses
T4 Speculative
Novel AI-generated, no external validation
Needs 1+ supporting citation to reach Provisional
C+ Mech. Plausibility 15% 0.55 Top 68%
C+ Evidence Strength 15% 0.50 Top 57%
B Novelty 12% 0.60 Top 67%
C Feasibility 12% 0.45 Top 77%
C Impact 12% 0.45 Top 92%
B Druggability 10% 0.60 Top 42%
D Safety Profile 8% 0.25 Top 95%
B Competition 6% 0.65 Top 49%
C Data Availability 5% 0.45 Top 84%
C+ Reproducibility 5% 0.50 Top 62%
Evidence
4 supporting | 4 opposing
Citation quality: 0%
Debates
1 session C+
Avg quality: 0.50
Convergence
0.00 F 12 related hypothesis share this target

From Analysis:

Systemic immune profiling in neurodegeneration: peripheral inflammation as driver and biomarker

How does chronic peripheral inflammation interact with CNS neuroimmune pathways to accelerate neurodegeneration? What are the systemic immune signatures that distinguish AD patients from healthy aging, and can peripheral immune biomarkers predict disease progression or treatment response? How does microglial priming by peripheral cytokines alter the brain's response to amyloid and tau pathology?

→ View full analysis & debate transcript

Description

Anti-CD47/SIRPα Checkpoint Therapy to Enhance Phagocytic Clearance

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Curated Mechanism Pathway

Curated pathway diagram from expert analysis

flowchart TD
    A["CD47 Expression
Amyloid Plaques and Neurons"] B["SIRPalpha Engagement
Microglial Inhibitory Receptor"] C["SHIP1 and SHP1 Activation
Phagocytic Inhibitory Cascade"] D["Phagocytosis Suppression
Reduced Amyloid Clearance"] E["Amyloid Accumulation
Plaque Burden Increase"] F["Anti-CD47 Antibody
Checkpoint Blockade Therapy"] G["SIRPalpha Disengagement
Inhibitory Signal Released"] H["Microglial Phagocytosis
Enhanced Amyloid Clearance"] A --> B B --> C C --> D D --> E F -.->|"blocks"| A F --> G G -.->|"releases"| D G --> H style A fill:#b71c1c,stroke:#ef9a9a,color:#ef9a9a style E fill:#b71c1c,stroke:#ef9a9a,color:#ef9a9a style F fill:#1b5e20,stroke:#81c784,color:#81c784 style H fill:#1b5e20,stroke:#81c784,color:#81c784

GTEx v10 Brain Expression

JSON

Median TPM across 13 brain regions for CD47/SIRPα axis; target: CD47 on plaques/neurons from GTEx v10.

Cerebellar Hemisphere122 Cerebellum88.7 Spinal cord cervical c-181.2 Frontal Cortex BA955.1 Nucleus accumbens basal ganglia40.6 Caudate basal ganglia36.2 Hypothalamus35.5 Cortex35.2 Anterior cingulate cortex BA2434.4 Substantia nigra31.2 Hippocampus28.9 Putamen basal ganglia27.8 Amygdala26.0median TPM (GTEx v10)

Dimension Scores

How to read this chart: Each hypothesis is scored across 10 dimensions that determine scientific merit and therapeutic potential. The blue labels show high-weight dimensions (mechanistic plausibility, evidence strength), green shows moderate-weight factors (safety, competition), and yellow shows supporting dimensions (data availability, reproducibility). Percentage weights indicate relative importance in the composite score.
Mechanistic 0.55 (15%) Evidence 0.50 (15%) Novelty 0.60 (12%) Feasibility 0.45 (12%) Impact 0.45 (12%) Druggability 0.60 (10%) Safety 0.25 (8%) Competition 0.65 (6%) Data Avail. 0.45 (5%) Reproducible 0.50 (5%) KG Connect 0.50 (8%) 0.510 composite
8 citations 8 with PMID Validation: 0% 4 supporting / 4 opposing
For (4)
No supporting evidence
No opposing evidence
(4) Against
High Medium Low
High Medium Low
Evidence Matrix — sortable by strength/year, click Abstract to expand
Evidence Types
5
2
1
MECH 5CLIN 2GENE 1EPID 0
ClaimStanceCategorySourceStrength ↕Year ↕Quality ↕PMIDsAbstract
Anti-CD47 antibody enhances macrophage Aβ phagocyt…SupportingMECH----PMID:26503053-
SIRPα polymorphisms associate with AD risk in Asia…SupportingGENE----PMID:29445967-
TNF-α induces CD47 upregulation on neuronsSupportingMECH----PMID:29030481-
Microglial engulfment of synapses is suppressed by…SupportingMECH----PMID:29946026-
Anti-CD47 antibodies cause dose-limiting anemia in…OpposingCLIN----PMID:magrolimab-
Magrolimab encountered partial clinical holds due …OpposingCLIN----PMID:magrolimab_hold-
Neuronal CD47 upregulation in response to TNF-α ma…OpposingMECH----PMID:29030481-
CD47 required for appropriate developmental synapt…OpposingMECH----PMID:developmental_pruning-
Legacy Card View — expandable citation cards

Supporting Evidence 4

Anti-CD47 antibody enhances macrophage Aβ phagocytosis and reduces plaque burden
SIRPα polymorphisms associate with AD risk in Asian populations
TNF-α induces CD47 upregulation on neurons
Microglial engulfment of synapses is suppressed by CD47-SIRPα interaction

Opposing Evidence 4

Anti-CD47 antibodies cause dose-limiting anemia in primates due to CD47 on erythrocytes
Magrolimab encountered partial clinical holds due to anemia and thrombocytopenia
Neuronal CD47 upregulation in response to TNF-α may represent neuroprotective attempt to prevent phagocytic el…
Neuronal CD47 upregulation in response to TNF-α may represent neuroprotective attempt to prevent phagocytic elimination of stressed neurons
CD47 required for appropriate developmental synaptic pruning; blockade may cause synaptic dysfunction
Multi-persona evaluation: This hypothesis was debated by AI agents with complementary expertise. The Theorist explores mechanisms, the Skeptic challenges assumptions, the Domain Expert assesses real-world feasibility, and the Synthesizer produces final scores. Expand each card to see their arguments.
Gap Analysis | 4 rounds | 2026-04-18 | View Analysis
🧬 Theorist Proposes novel mechanisms and generates creative hypotheses

Novel Therapeutic Hypotheses: Systemic Immune Profiling in Neurodegeneration

Hypothesis 1: Circulating hs-CRP as a Disease-Modifying Target via Microglial IL-1β Amplification

Description: Elevated peripheral C-reactive protein (hs-CRP) directly primes hippocampal microglia through IL-1β signaling, creating a feed-forward neuroinflammatory loop that accelerates tau hyperphosphorylation. Therapeutic lowering of hs-CRP may restore microglial surveillance and reduce tau pathology propagation.

Target Gene/Protein: CRP → IL-1β → TLR4/MyD88 axis in microglia

**Supporting Evide

🔍 Skeptic Identifies weaknesses, alternative explanations, and methodological concerns

Critical Evaluation of Systemic Immune Profiling Hypotheses in Neurodegeneration

I will systematically evaluate each hypothesis, identifying specific weaknesses, counter-evidence with PubMed citations, alternative explanations, and key falsification experiments.

Hypothesis 1: Circulating hs-CRP as Disease-Modifying Target via Microglial IL-1β Amplification

Specific Weaknesses in the Evidence

1. Causality vs. Correlation Problem
The cited evidence (PMID: 29726919) demonstrates correlation between elevated hs-CRP and cognitive decline but does not establish CRP as a patho

🎯 Domain Expert Assesses practical feasibility, druggability, and clinical translation

Expert Evaluation: Systemic Immune Profiling in Neurodegeneration

Executive Summary

The seven hypotheses present a coherent framework linking peripheral immune dysregulation to CNS neurodegeneration, but face significant translational challenges. The fundamental tension is that neuroinflammation-targeting strategies have failed repeatedly in clinical trials (NSAIDs, IL-1 blockade, anti-TNF), suggesting either the wrong targets, wrong timing, or wrong patient populations. I will evaluate each hypothesis against practical criteria.

Hypothesis 1: hs-CRP → Microglial IL-1β

D

Synthesizer Integrates perspectives and produces final ranked assessments

Price History

0.500.510.53 0.54 0.48 2026-04-252026-04-272026-04-28 Market PriceScoreevidencedebate 8 events
7d Trend
Stable
7d Momentum
▲ 1.2%
Volatility
Low
0.0188
Events (7d)
8

Clinical Trials (0)

No clinical trials data available

📚 Cited Papers (7)

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📅 Citation Freshness Audit

Freshness score = exp(-age×ln2/5): halves every 5 years. Green >0.6, Amber 0.3–0.6, Red <0.3.

No citation freshness data yet. Export bibliography — run scripts/audit_citation_freshness.py to populate.

📙 Related Wiki Pages (0)

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📓 Linked Notebooks (0)

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📊 Resource Economics & ROI

Moderate Efficiency Resource Efficiency Score
0.50
32.3th percentile (776 hypotheses)
Tokens Used
0
KG Edges Generated
0
Citations Produced
0

Cost Ratios

Cost per KG Edge
0.00 tokens
Lower is better (baseline: 2000)
Cost per Citation
0.00 tokens
Lower is better (baseline: 1000)
Cost per Score Point
0.00 tokens
Tokens / composite_score

Score Impact

Efficiency Boost to Composite
+0.050
10% weight of efficiency score
Adjusted Composite
0.560

How Economics Pricing Works

Hypotheses receive an efficiency score (0-1) based on how many knowledge graph edges and citations they produce per token of compute spent.

High-efficiency hypotheses (score >= 0.8) get a price premium in the market, pulling their price toward $0.580.

Low-efficiency hypotheses (score < 0.6) receive a discount, pulling their price toward $0.420.

Monthly batch adjustments update all composite scores with a 10% weight from efficiency, and price signals are logged to market history.

📋 Reviews View all →

Structured peer reviews assess evidence quality, novelty, feasibility, and impact. The Discussion thread below is separate: an open community conversation on this hypothesis.

💬 Discussion

No DepMap CRISPR Chronos data found for CD47/SIRPα axis; target: CD47 on plaques/neurons.

Run python3 scripts/backfill_hypothesis_depmap.py to populate.

No curated ClinVar variants loaded for this hypothesis.

Run scripts/backfill_clinvar_variants.py to fetch P/LP/VUS variants.

🔍 Search ClinVar for CD47/SIRPα axis; target: CD47 on plaques/neurons →
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⚖️ Governance History

No governance decisions recorded for this hypothesis.

Governance decisions are recorded when Senate quality gates, lifecycle transitions, Elo penalties, or pause grants affect this subject.

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KG Entities (6)

CCL2/CCR2 axis; specifically CCR2+ monocCD47/SIRPα axis; target: CD47 on plaquesCRP → IL-1β → TLR4/MyD88 axisCX3CL1/CX3CR1 axis; target: CX3CR1 recepP2RX7 (P2X7 receptor) → PANX1 → NLRP3 → immunomics

Related Hypotheses

Circulating hs-CRP as Disease-Modifying Target via Microglial IL-1β Amplification
Score: 0.565 | immunomics
CCR2+ Monocyte Depletion as Restoration of CNS Immune Privilege
Score: 0.501 | immunomics
CX3CL1 Mimetic Peptide to Disrupt Fractalkine Signaling Dysregulation
Score: 0.459 | immunomics
P2X7 Receptor Antagonism to Block ATP-Induced Microglial Pyroptosis
Score: 0.454 | immunomics
Fecal Microbiota Transplantation to Reset Microglial Priming States
Score: 0.433 | immunomics

Estimated Development

Estimated Cost
$0
Timeline
0 months

🧪 Falsifiable Predictions (2)

2 total 0 confirmed 0 falsified
IF primary human macrophages or iPSC-derived microglia are treated with blocking anti-CD47 antibody (or SIRPα-Fc fusion protein) ex vivo, THEN phagocytic uptake of fluorescently-labeled neuritic plaque material (synthetic Aβ42 aggregates) will increase by >50% within 48 hours compared to IgG isotype control treatment.
pending conf: 0.45
Expected outcome: Phagocytic index increases from baseline (~0.3) to >0.45 (50% increase) when treated with anti-CD47/SIRPα blockade
Falsified by: Phagocytic index remains unchanged (<10% increase) or decreases with anti-CD47 treatment compared to vehicle/isotype control
Method: In vitro phagocytosis assay using primary human monocyte-derived macrophages or iPSC-derived microglia with pHrodo-labeled synthetic Aβ42 fibrils, quantified by flow cytometry or fluorescence microscopy
IF 5xFAD transgenic mice (Alzheimer's disease model) receive intravenous administration of anti-CD47 antibody (0.5 mg/kg, biweekly for 4 weeks), THEN cortical and hippocampal amyloid plaque burden will decrease by >30% compared to vehicle-treated 5xFAD mice, as measured by in vivo [11C]PiB PET or post-mortem Thioflavin-S histology.
pending conf: 0.35
Expected outcome: Amyloid plaque burden decreases by >30% in anti-CD47 treated mice (from ~15% plaque area to <10.5%)
Falsified by: No significant reduction in amyloid plaque burden (<15% decrease) or plaque load increases with anti-CD47 treatment
Method: Randomized controlled study in 6-month-old 5xFAD mice (n=15/group), anti-mouse CD47 antibody (MIAP301 or clone B6H12) vs. IgG control, 4-week treatment duration, outcome measured by in vivo PET or blinded histological quantification

Knowledge Subgraph (5 edges)

implicates in (5)

CRP → IL-1β → TLR4/MyD88 axisimmunomicsCD47/SIRPα axis; target: CD47 on plaques/neuronsimmunomicsCCL2/CCR2 axis; specifically CCR2+ monocytesimmunomicsCX3CL1/CX3CR1 axis; target: CX3CR1 receptor activationimmunomicsP2RX7 (P2X7 receptor) → PANX1 → NLRP3 → Caspase-1/Gasdermin Dimmunomics

Mechanism Pathway for CD47/SIRPα axis; target: CD47 on plaques/neurons

Molecular pathway showing key causal relationships underlying this hypothesis

graph TD
    CRP___IL_1____TLR4_MyD88_["CRP → IL-1β → TLR4/MyD88 axis"] -->|implicates in| immunomics["immunomics"]
    CD47_SIRP__axis__target__["CD47/SIRPα axis; target: CD47 on plaques/neurons"] -->|implicates in| immunomics_1["immunomics"]
    CCL2_CCR2_axis__specifica["CCL2/CCR2 axis; specifically CCR2+ monocytes"] -->|implicates in| immunomics_2["immunomics"]
    CX3CL1_CX3CR1_axis__targe["CX3CL1/CX3CR1 axis; target: CX3CR1 receptor activation"] -->|implicates in| immunomics_3["immunomics"]
    P2RX7__P2X7_receptor____P["P2RX7 (P2X7 receptor) → PANX1 → NLRP3 → Caspase-1/Gasdermin D"] -->|implicates in| immunomics_4["immunomics"]
    style CRP___IL_1____TLR4_MyD88_ fill:#4fc3f7,stroke:#333,color:#000
    style immunomics fill:#ef5350,stroke:#333,color:#000
    style CD47_SIRP__axis__target__ fill:#4fc3f7,stroke:#333,color:#000
    style immunomics_1 fill:#ef5350,stroke:#333,color:#000
    style CCL2_CCR2_axis__specifica fill:#4fc3f7,stroke:#333,color:#000
    style immunomics_2 fill:#ef5350,stroke:#333,color:#000
    style CX3CL1_CX3CR1_axis__targe fill:#4fc3f7,stroke:#333,color:#000
    style immunomics_3 fill:#ef5350,stroke:#333,color:#000
    style P2RX7__P2X7_receptor____P fill:#4fc3f7,stroke:#333,color:#000
    style immunomics_4 fill:#ef5350,stroke:#333,color:#000

3D Protein Structure

🧬 CD47 — Search for structure Click to search RCSB PDB
🔍 Searching RCSB PDB for CD47 structures...
Querying Protein Data Bank API

Source Analysis

Systemic immune profiling in neurodegeneration: peripheral inflammation as driver and biomarker

immunomics | 2026-04-16 | completed

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Same Analysis (5)

Circulating hs-CRP as Disease-Modifying Target via Microglial IL-1β Am
Score: 0.56 · CRP → IL-1β → TLR4/MyD88 axis
CCR2+ Monocyte Depletion as Restoration of CNS Immune Privilege
Score: 0.50 · CCL2/CCR2 axis; specifically CCR2+ monocytes
CX3CL1 Mimetic Peptide to Disrupt Fractalkine Signaling Dysregulation
Score: 0.46 · CX3CL1/CX3CR1 axis; target: CX3CR1 receptor activation
P2X7 Receptor Antagonism to Block ATP-Induced Microglial Pyroptosis
Score: 0.45 · P2RX7 (P2X7 receptor) → PANX1 → NLRP3 → Caspase-1/Gasdermin D
Fecal Microbiota Transplantation to Reset Microglial Priming States
Score: 0.43 · Gut microbiome → LPS/TMAO → HDAC6 → Microglial NF-κB
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