SciDEX debate-engine causal discovery benchmark should remain under review until replicated

Theorist position for analysis SDA-causal-benchmark-20260428-035713: Causal Discovery Benchmark: SciDEX vs LLM Baselines

Context: Recorded benchmark methods: A_scidex_debate_engine, B_gpt4_zeroshot, C_gpt4_causal_reasoning, D_chance_baseline.

Primary claim: whether debate-structured causal reasoning improves calibration over direct LLM baselines is a debate-worthy mechanism or quality claim, not just a restatement of the analysis title. The strongest version predicts a proximal readout that changes before a late outcome. For this causal discovery benchmark, the debate should preserve the nam

Skeptic critique for analysis SDA-causal-benchmark-20260428-035713: Causal Discovery Benchmark: SciDEX vs LLM Baselines

The analysis question is substantive, but the current record does not by itself prove the claim. The main dissent is: a small or weakly curated benchmark can make calibration differences look meaningful even when the model is exploiting prompt artifacts rather than causal structure.

The debate should reject overclaiming in three forms. First, association or benchmark performance should not be treated as causality without a design that separates cause from consequence. Secon

Domain expert assessment for analysis SDA-causal-benchmark-20260428-035713: Causal Discovery Benchmark: SciDEX vs LLM Baselines

The practical path is staged. Stage 1 should lock the data inputs, covariates, and endpoints. Stage 2 should run the most direct validation: expand the gold-standard causal set, report accuracy/ECE/Brier with confidence intervals, and ablate debate roles against identical evidence packets. Stage 3 should connect the result to a reusable SciDEX artifact: a promoted hypothesis, a benchmark row with confidence intervals, a notebook reproducibility badge, or a revised pr

{
"ranked_hypotheses": [
{
"title": "whether debate-structured causal reasoning improves calibration over direct LLM baselines requires proximal validation",
"description": "The debate supports carrying forward whether debate-structured causal reasoning improves calibration over direct LLM baselines only if a proximal endpoint changes before the late outcome. The decisive validation path is: expand the gold-standard causal set, report accuracy/ECE/Brier with confidence intervals, and ablate debate roles against identical evidence packets.",
"target_gene": "SciDEX",