[Wiki] Add mermaid diagrams to next batch of high-connectivity entities done analysis:5 coding:5

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Generate mermaid pathway/relationship diagrams for top-connected wiki entities that don't have them yet. Target: 50+ entities. ## REOPENED TASK — CRITICAL CONTEXT This task was previously marked 'done' but the audit could not verify the work actually landed on main. The original work may have been: - Lost to an orphan branch / failed push - Only a spec-file edit (no code changes) - Already addressed by other agents in the meantime - Made obsolete by subsequent work **Before doing anything else:** 1. **Re-evaluate the task in light of CURRENT main state.** Read the spec and the relevant files on origin/main NOW. The original task may have been written against a state of the code that no longer exists. 2. **Verify the task still advances SciDEX's aims.** If the system has evolved past the need for this work (different architecture, different priorities), close the task with reason "obsolete: " instead of doing it. 3. **Check if it's already done.** Run `git log --grep=''` and read the related commits. If real work landed, complete the task with `--no-sha-check --summary 'Already done in '`. 4. **Make sure your changes don't regress recent functionality.** Many agents have been working on this codebase. Before committing, run `git log --since='24 hours ago' -- ` to see what changed in your area, and verify you don't undo any of it. 5. **Stay scoped.** Only do what this specific task asks for. Do not refactor, do not "fix" unrelated issues, do not add features that weren't requested. Scope creep at this point is regression risk. If you cannot do this task safely (because it would regress, conflict with current direction, or the requirements no longer apply), escalate via `orchestra escalate` with a clear explanation instead of committing.

Git Commits (1)

[Atlas] Verify mermaid task complete — 13,639/13,640 entities have diagrams [task:9f80cb3b-c98f-4edc-9322-22eca4e58c50]2026-04-16
Spec File

[Wiki] Add mermaid diagrams to next batch of high-connectivity entities

ID: 9f80cb3b-c98 Priority: 82 Type: one_shot Status: open

Goal

Generate mermaid pathway/relationship diagrams for top-connected wiki entities that don't have them yet. Target: 50+ entities.

Acceptance Criteria

☑ Concrete deliverables created (13,639 entities have mermaid diagrams)
☑ Work log updated with timestamped entry

Work Log

2026-04-16 Verification

Task verified complete. Prior agent work populated mermaid diagrams for essentially all wiki entities.

Verification evidence:

  • Total wiki entities: 13,640
  • With mermaid diagrams: 13,639 (100%)
  • Without mermaid: 1 (empty-named placeholder entity '', not a real entity)
  • Script run confirms: "Found 0 wiki entities without mermaid and 3+ KG edges"
  • Sample mermaid diagrams verified with substantial content (169-1697 chars each)
Conclusion: No additional entities meet the criteria (3+ KG edges, missing mermaid). Target of 50+ entities was exceeded by prior batch work. Task complete.

Payload JSON
{
  "requirements": {
    "coding": 5,
    "analysis": 5
  },
  "completion_shas": [
    "cb945b20c"
  ],
  "completion_shas_checked_at": "2026-04-16T22:55:12.945058+00:00",
  "_reset_note": "This task was reset after a database incident on 2026-04-17.\n\n**Context:** SciDEX migrated from SQLite to PostgreSQL after recurring DB\ncorruption. Some work done during Apr 16-17 may have been lost.\n\n**Before starting work:**\n1. Check if the task's goal is ALREADY satisfied (run the relevant checks)\n2. Check `git log --all --grep=task:YOUR_TASK_ID` for prior commits\n3. If complete, verify and mark done. If partial, continue. If not done, proceed.\n\n**DB change:** SciDEX now uses PostgreSQL. `get_db()` auto-detects via\nSCIDEX_DB_BACKEND=postgres env var.",
  "_reset_at": "2026-04-18T06:29:22.046013+00:00",
  "_reset_from_status": "done"
}

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