[Artifacts] Create Jupyter notebooks for top 5 analyses
ID: ffc29e2b-a698
Priority: 90
Type: one-time
Status: complete
Goal
Generate rendered Jupyter notebooks demonstrating data analysis for the top analyses. Include gene expression plots, pathway enrichment, and statistical tests.
Acceptance Criteria
☑ Rich notebooks created for all top 5 analyses (21 cells each with radar charts, volcano plots, pathway enrichment, statistical tests)
☑ 2 additional analyses (gap-009, gap-v2-bc5f270e) that were missing notebooks now have them
☑ All notebooks registered in DB with HTML renderings
☑ Notebooks accessible via /notebooks/ endpoint
Work Log
2026-04-02 — Slot 4
- Explored existing notebook infrastructure: generate_rich_notebooks.py already creates comprehensive 21-cell notebooks
- Found top 5 analyses already had rich notebooks (31-32KB ipynb, ~290KB html)
- Found 2 completed analyses without notebooks: gap-009 (microglia-astrocyte crosstalk) and gap-v2-bc5f270e (epigenetic clocks)
- Generated rich notebooks for all 7 analyses (2 new + 5 refreshed)
- New notebooks registered in DB and serving at /notebooks/ endpoint
- Result: Done — all completed analyses now have rich Jupyter notebooks