Notebook Artifact Registry

Computational analysis artifacts linked to analyses and knowledge graph entities

Filter by tag:All "CRISPR screen""Mendelian randomization""Urolithin A""clinical trials""prediction market"}AD ALS APOE4 Aging Allen Institute Alzheimer's BBB CRISPR Circuit Analysis Cross-Age Analysis Epigenetics Gene Expression HD Immune Response Microglia Mouse Model NMN NR Neural Dynamics Neurodegeneration Neuroinflammation PD PINK1 Parkin Protein Propagation SEA-AD Senescent Cells Senolytics Structural Biology Tau Therapeutics []ad aging allen-brain allen-brain-atlas allen-institute alzheimers analysis artifact astrocytes atlas auto biomarkers cell-atlas cell-types ci demo draft druggability enrichr epigenetics forge forge-tools gene-expression genetics go gtex gwas hypotheses hypothesis-analysis kegg knowledge-gap lipid-rafts microglia mitohormesis mitophagy neurodegeneration neuroinflammation neurons notebook pathway-enrichment reactome scanpy sea-ad seeded senescence showcase single-cell statistics stub tau template test tsne umap walkthrough {mitochondria

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AD GWAS Risk Loci Analysis

Forge analysis notebook over ad_genetic_risk_loci: Enrichr pathway enrichment, GTEx tissue expression, chromosome-level effect-size visualization, and druggability-ranked hypothese

forge atlas gwas ad genetics

Created: 2026-04-26

Neuroinflammation and microglial priming in early Alzheimer's Disease — Analysis Notebook

CI-generated notebook stub for analysis SDA-2026-04-04-gap-20260404-microglial-priming-early-ad. Investigate mechanistic links between early microglial priming states, neuroinflamm

stub auto ci

📊 Neuroinflammation and microglial priming in early Alzheimer's Disease

Created: 2026-04-16

CRISPR-based therapeutic approaches for neurodegenerative diseases — Analysis Notebook

CI-generated notebook stub for analysis SDA-2026-04-03-gap-crispr-neurodegeneration-20260402. Evaluate the potential of CRISPR/Cas9 and related gene editing technologies for treati

stub auto ci

📊 CRISPR-based therapeutic approaches for neurodegenerative diseases

Created: 2026-04-16

Gene expression changes in aging mouse brain predicting neurodegenerative vulnerability — Analysis Notebook

CI-generated notebook stub for analysis SDA-2026-04-03-gap-aging-mouse-brain-v3-20260402. What gene expression changes in the aging mouse brain predict neurodegenerative vulnerabil

stub auto ci

📊 Gene expression changes in aging mouse brain predicting neurodegenerative vulnerability

Created: 2026-04-16

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Mitochondrial Dysfunction as a Driver of Neurodegeneration

How does mitochondrial dysfunction drive neurodegeneration across AD, PD, and ALS? Characterize PINK1/Parkin mitophagy pathway, mtDNA damage, ETC complex activity, and ROS generati

{mitochondria neurodegeneration PINK1 Parkin mitophagy

Created: 2026-04-13

All Notebooks (1) (filtered by: mitophagy)

Mitochondrial Dysfunction as a Driver of Neurodegeneration

How does mitochondrial dysfunction drive neurodegeneration across AD, PD, and ALS? Characterize PINK1/Parkin mitophagy pathway, mtDNA damage, ETC complex activity, and ROS generation in disease-releva

{mitochondria neurodegeneration PINK1 Parkin mitophagy

Created: 2026-04-13