Notebook Artifact Registry

Computational analysis artifacts linked to analyses and knowledge graph entities

Filter by tag:All APOE4 Aging Allen Institute Alzheimer's CRISPR Circuit Analysis Cross-Age Analysis Epigenetics Gene Expression Immune Response Microglia Mouse Model Neural Dynamics Neurodegeneration Neuroinflammation Protein Propagation SEA-AD Senescent Cells Senolytics Structural Biology Tau Therapeutics []aging allen-brain allen-brain-atlas allen-institute alzheimers analysis artifact astrocytes auto biomarkers cell-atlas cell-types ci demo draft epigenetics forge-tools gene-editing gene-expression go hypotheses hypothesis-analysis kegg knowledge-gap lipid-rafts microglia neurodegeneration neuroinflammation neurons notebook pathway-enrichment reactome scanpy sea-ad seeded senescence showcase single-cell statistics stub tau template test transcriptomics tsne umap walkthrough

Sort:

🌟 Spotlight Notebooks

Gene Expression Changes in Aging Mouse Brain Predicting Neurodegenerative Vulnerability

Real Forge-powered analysis: PubMed search, STRING PPI, Reactome pathways, gene annotations for aging mouse brain transcriptomics.

showcase forge-tools transcriptomics neurodegeneration

📊 Gene expression changes in aging mouse brain predicting neurodegenerative vulnerability

Created: 2026-04-16

View Notebook →

Neuroinflammation and Microglial Priming in Early Alzheimer's Disease

Real Forge-powered analysis: PubMed search, STRING PPI, Reactome pathways, gene annotations for microglial priming in early AD.

showcase forge-tools neuroinflammation neurodegeneration

📊 Neuroinflammation and microglial priming in early Alzheimer's Disease

Created: 2026-04-16

View Notebook →

CRISPR-Based Therapeutic Approaches for Neurodegenerative Diseases

Real Forge-powered analysis: PubMed search, STRING PPI, Reactome pathways, gene annotations for CRISPR neurodegeneration therapy research.

showcase forge-tools gene-editing neurodegeneration

📊 CRISPR-based therapeutic approaches for neurodegenerative diseases

Created: 2026-04-16

View Notebook →

Mitochondrial Dysfunction as a Driver of Neurodegeneration

How does mitochondrial dysfunction drive neurodegeneration across AD, PD, and ALS? Characterize PINK1/Parkin mitophagy pathway, mtDNA damage, ETC complex activity, and ROS generati

[]

Created: 2026-04-13

View Notebook →

Tau Pathology Propagation in Tauopathies — Mechanistic Dissection

How does misfolded tau spread through the brain in tauopathies? Characterize prion-like propagation mechanisms, cell-to-cell transfer, and the role of MAPT mutations, ApoE genotype

[]

Created: 2026-04-13

View Notebook →

All Notebooks (3) (filtered by: lipid-rafts)

Lipid raft composition changes in synaptic neurodegeneration

Investigate how lipid raft composition (cholesterol metabolism, sphingolipids) changes in synaptic membranes during neurodegeneration and their mechanistic role in amyloid-beta processing and synapse

gene-expression hypothesis-analysis lipid-rafts neurodegeneration statistics

📊 Lipid raft composition changes in synaptic neurodegeneration (neurodegeneration)

Created: 2026-04-01

View Notebook →

Mechanistic role of APOE in neurodegeneration

SciDEX Analysis | ID: SDA-2026-04-01-gap-auto-fd6b1635d9

lipid-rafts neurodegeneration statistics

Created: 2026-04-01

Mechanistic role of APOE in neurodegeneration

What are the mechanisms underlying mechanistic role of apoe in neurodegeneration?

gene-expression hypothesis-analysis lipid-rafts neurodegeneration statistics

📊 Mechanistic role of APOE in neurodegeneration (neurodegeneration)

Created: 2026-04-01

View Notebook →