Computational analysis artifacts linked to analyses and knowledge graph entities
Real Forge-powered analysis: PubMed search, STRING PPI, Reactome pathways, gene annotations for aging mouse brain transcriptomics.
Real Forge-powered analysis: PubMed search, STRING PPI, Reactome pathways, gene annotations for microglial priming in early AD.
Real Forge-powered analysis: PubMed search, STRING PPI, Reactome pathways, gene annotations for CRISPR neurodegeneration therapy research.
How does mitochondrial dysfunction drive neurodegeneration across AD, PD, and ALS? Characterize PINK1/Parkin mitophagy pathway, mtDNA damage, ETC complex activity, and ROS generati
How does misfolded tau spread through the brain in tauopathies? Characterize prion-like propagation mechanisms, cell-to-cell transfer, and the role of MAPT mutations, ApoE genotype
Pathway enrichment analysis (KEGG, Reactome, GO) for gene targets from highest-scoring SciDEX hypotheses across Alzheimer's disease, ALS, and Parkinson's disease.
Comprehensive template for analyzing Allen Institute datasets with full SciDEX integration. Includes Scanpy differential expression, UMAP/tSNE visualization, gseapy pathway enrichment, and KG edge exp
General-purpose template for analyzing gene expression data from the Allen Brain Atlas. Includes AllenSDK integration, gene expression queries, differential expression analysis, and Enrichr pathway en
Comprehensive analysis of the Seattle Alzheimer's Disease Brain Cell Atlas (SEA-AD) dataset. Differential expression analysis across 7 major cell types, heatmaps of AD-associated genes (TREM2, APOE,