{"quest":{"id":"58079891-7a5","name":"Senate","description":"Governance & quality gates — agent performance tracking, work audit trails, convergence monitoring, quality control. Includes epistemic tier enforcement (T0-T5), adversarial falsification via red-team Falsifier persona, proof-gated KG updates with contradiction checking, and epistemic health dashboards. Implements the Epistemic Ratchet: adding knowledge is easy, degrading established knowledge is hard.","layer":"Senate","priority":88,"status":"active","created_at":"2026-04-02T10:00:57.209491+00:00","updated_at":"2026-04-10T14:44:10.355870+00:00"},"tasks":[{"id":"aa4468a3-edc2-409b-b96d-4b448228545a","title":"[Senate] Create resource_usage tracking table and metering","description":"Create comprehensive resource tracking for SciDEX:\n\n1. Create resource_usage table: id, entity_type (hypothesis/analysis/entity/gap), entity_id, resource_type (bedrock_tokens/input_tokens/output_tokens/api_calls/cpu_ms), amount, model_id (claude-sonnet/claude-haiku), cost_usd_estimate, created_at\n2. Create resource_budgets table: entity_type, entity_id, token_budget, budget_period, allocated_at\n3. Add token metering to scidex_orchestrator.py: after each Bedrock call, INSERT into resource_usage with input_tokens, output_tokens, model_id, and linked analysis_id\n4. Add tool invocation metering: track each PubMed/Semantic Scholar/etc API call in resource_usage\n5. Estimate costs: Bedrock Sonnet ~$3/1M input, $15/1M output; Haiku ~$0.25/1M input, $1.25/1M output\n6. Aggregate views: total_tokens_per_analysis, total_tokens_per_hypothesis, total_cost_per_day","status":"running","priority":92,"task_type":"one_shot","frequency":"","assigned_slot":"76","started_at":"2026-04-25T11:03:24.085492+00:00","completed_at":"2026-04-25T03:11:57.807977+00:00","updated_at":"2026-04-25T11:03:24.085492+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"claude","payload_json":"{}"},{"id":"e643cdd3-afd6-410f-a366-a6297d112127","title":"[Senate] Security Manager: establish emergency access recovery procedures","description":"Create and document emergency access recovery procedures:\n1. Document all access methods: SSH keys, web endpoints, systemd services\n2. Create /api/health endpoint (no auth required) that returns system status\n3. Ensure backup.sh can run independently even if API is down\n4. Document how to restore from S3 backups if local system is compromised\n5. Create emergency_restore.sh script that can rebuild from S3 backup\n6. Store recovery procedures in SECURITY.md AND in S3 as recovery.md\n7. Ensure at least one access method always works even if others are locked\nPRINCIPLE: Security should NEVER result in lockout. Always maintain a recovery path.\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"running","priority":90,"task_type":"one_shot","frequency":"","assigned_slot":"42","started_at":"2026-04-25T21:15:55.577850+00:00","completed_at":"2026-04-25T13:06:03.948796+00:00","updated_at":"2026-04-25T21:15:55.577850+00:00","summary":"","completion_notes":"Auto-release: non-recurring task produced no commits this iteration; requeuing for next cycle","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"claude","payload_json":"{\"requirements\": {\"coding\": 9, \"safety\": 10}, \"completion_shas\": [\"24b4a2c47\"], \"completion_shas_checked_at\": \"2026-04-21T04:07:59.353744+00:00\"}"},{"id":"82074adc-507f-4e6b-9092-e2ceee79e7d4","title":"[Senate] Create /resources system dashboard page","description":"Create a comprehensive system resources dashboard at /resources showing:\n\n1. Global metrics: Total tokens consumed (input/output), total API calls, estimated cost (USD)\n2. Per-model breakdown: Sonnet vs Haiku usage, cost per model\n3. Time series: Token usage over time (hourly/daily)\n4. Per-entity breakdown: Top 10 hypotheses by token cost, top 10 analyses by cost\n5. Resource efficiency: tokens per KG edge, tokens per hypothesis, tokens per PubMed citation\n6. Live agent metrics: Active agents, tokens consumed this session, estimated hourly burn rate\n7. Budget tracking: Allocated vs consumed per entity, over-budget alerts\n8. Charts using Chart.js or inline SVG for token usage trends\n\nPull data from: resource_usage table, agent_performance table, debate_rounds (tokens_used), tool_calls table.\nAlso query AWS Bedrock usage if available via boto3.","status":"running","priority":90,"task_type":"one_shot","frequency":"","assigned_slot":"40","started_at":"2026-04-25T14:37:17.056001+00:00","completed_at":"2026-04-25T13:41:58.423519+00:00","updated_at":"2026-04-25T14:37:17.056001+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"claude","payload_json":"{}"},{"id":"80ffb77b-8391-493c-8644-37086c8e2e3c","title":"[Senate] CI: Quest engine — generate tasks from quests when queue is low","description":"Recurring task that runs quest_engine.py when the open one-shot task queue drops below 50. Prevents the queue from emptying — without this, agents have nothing substantive to work on. See spec for full details.","status":"open","priority":99,"task_type":"recurring","frequency":"every-30-min","assigned_slot":"","started_at":null,"completed_at":"2026-04-25T16:32:03.045706+00:00","updated_at":"2026-04-25T22:05:02.011203+00:00","summary":"","completion_notes":"Auto-release: recurring task had no work this cycle","last_error":"Requeued by cli-requeue","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest-engine-ci.md","provider":"any","payload_json":"{\"completion_shas\": [\"b6ef46508\"], \"completion_shas_checked_at\": \"2026-04-21T04:33:08.236839+00:00\", \"_watchdog_repair_task_id\": \"1fd42f17-02b4-4cc6-a247-cf87150eabd4\", \"_watchdog_repair_created_at\": \"2026-04-22T20:06:43.678495+00:00\", \"requirements\": {\"reasoning\": 8, \"analysis\": 7}, \"_stall_skip_providers\": [\"glm\"]}"},{"id":"9b9a9320-d850-415a-ac56-4729cef6b6b2","title":"[Senate] Fix SQL injection patterns in cli.py and api.py","description":"Critical (C-1, C-2): SQL injection via f-strings in cli.py:212 (dynamic table names) and api.py:2872 (unused placeholders variable). Add table name allowlist validation in cli.py. Remove unused placeholders in api.py. Validate entity_name before queries. See security_audit_2026-04-02.md.\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"open","priority":89,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":null,"updated_at":"2026-04-23T06:51:21.985344+00:00","summary":"","completion_notes":"","last_error":"cli-reopen-manual: reopened — task was marked 'done' but has no task_runs row in (done/completed/success)","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/9b9a9320_d85_spec.md","provider":"claude","payload_json":"{\"requirements\": {\"coding\": 9, \"safety\": 10}, \"completion_shas\": [\"1745957583cff9b8c42e2ca23f3710d64f2f096d\"], \"completion_shas_checked_at\": \"2026-04-21T02:50:05.871869+00:00\"}"},{"id":"370890cc-17a6-4afc-803c-f3219625c49d","title":"[Senate] Implement resource tracking and metering","description":"Track actual resource usage per hypothesis/analysis/entity:\n1. Add token counting to all LLM calls in scidex_orchestrator.py (debate tokens per hypothesis)\n2. Add API call tracking in tools.py (PubMed queries, Semantic Scholar, etc.)\n3. Add CPU time tracking for post_process.py pipeline runs\n4. Store in resource_usage table with entity_type, entity_id, resource_type, amount, cost_usd\n5. Add /api/resource-usage/{entity_id} endpoint\n6. Display usage stats on hypothesis detail pages and Senate dashboard","status":"open","priority":88,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":null,"updated_at":"2026-04-23T06:51:21.985344+00:00","summary":"","completion_notes":"","last_error":"cli-reopen-manual: reopened — task was marked 'done' but has no task_runs row in (done/completed/success)","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"claude","payload_json":"{}"},{"id":"9e45545a-0eeb-4698-9d79-ffda3f456b45","title":"[Senate] Triage 20 autonomous engine failures and create fix tasks","description":"The Autonomous Engines quest needs systematic triage of recurring engine failures to keep the autonomous discovery loop healthy.\n\n## Steps\n1. Query task_runs for recurring tasks with last_error not empty: `SELECT title, last_error, completion_notes, COUNT(*) as fail_count FROM tasks WHERE project_id IN (SELECT id FROM projects WHERE name='SciDEX') AND task_type='recurring' AND last_error != '' GROUP BY title, last_error, completion_notes ORDER BY fail_count DESC LIMIT 20`\n2. For each failing engine: classify failure type (rate_limit, code_error, db_error, spec_mismatch)\n3. For fixable code/db errors: create a one-shot fix task with the specific bug description and fix approach\n4. For rate_limit errors: document the pattern and recommend frequency reduction\n5. Write triage summary to spec\n\n## Acceptance Criteria\n- [ ] 20 recurring task failures triaged\n- [ ] Fix tasks created for code/db errors\n- [ ] Frequency reduction recommendations documented\n- [ ] Triage summary committed","status":"open","priority":88,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-23T05:50:28.959480+00:00","updated_at":"2026-04-23T05:50:28.959480+00:00","summary":"","completion_notes":"","last_error":"rate_limit_retries_exhausted:glm","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{}"},{"id":"62d8a4ed-63e1-42fd-a0fa-694c90845e05","title":"[Senate] Audit artifact lifecycle: update status for 30 stale artifacts","description":"Many artifacts have status='active' but haven't been updated in 60+ days and have low quality scores, suggesting they should be 'investigating' or 'archived'.\n\n## Steps\n1. Query: `SELECT id, title, artifact_type, quality_score, updated_at, lifecycle_state FROM artifacts WHERE lifecycle_state = 'active' AND updated_at < NOW() - INTERVAL '60 days' AND (quality_score IS NULL OR quality_score < 0.3) ORDER BY updated_at ASC LIMIT 30`\n2. For each artifact: evaluate whether it should stay 'active', be moved to 'investigating', or 'archived' based on quality score and type\n3. Update lifecycle_state accordingly and log to artifacts_history\n4. Record governance decision for each status change\n\n## Acceptance Criteria\n- [ ] 30 stale artifacts reviewed\n- [ ] lifecycle_state updated for those requiring transition\n- [ ] Changes logged to artifacts_history with rationale\n- [ ] Changes committed and pushed","status":"open","priority":88,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"","updated_at":"2026-04-23T04:43:38.648820+00:00","summary":"","completion_notes":null,"last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{}"},{"id":"5a6a773f-ce5a-452c-9e24-292010740345","title":"[Senate] Audit 25 uncredited agent contributions for reward emission","description":"Agent contributions in agent_contributions table with reward_status='pending' have not been paid. For 25 oldest pending contributions, verify the contribution is valid (agent exists, action occurred, not duplicate), then call the reward emission pipeline to issue tokens. Log each emission to token_ledger.\\n\\nVerification:\\n- 25 agent contributions have reward_status='paid'\\n- token_ledger shows corresponding credit entries\\n- No double-payment (idempotency check passes)","status":"open","priority":88,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"","updated_at":"2026-04-23T01:36:20.288350+00:00","summary":"","completion_notes":null,"last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_engine_contribution_credit_audit_spec.md","provider":"any","payload_json":"{}"},{"id":"e4ad448a-ee3e-4f0e-a4c7-d563edf75a1b","title":"[Senate] Per-artifact resource attribution","description":"Implement per-artifact resource tracking so every hypothesis, analysis, entity, and gap shows its resource footprint:\n\n1. On hypothesis detail page: show total tokens spent on this hypothesis (debate + post-processing + tool calls)\n2. On analysis detail page: show total debate tokens (4 rounds), post-processing tokens, tool call count\n3. On entity page: show total tokens spent across all analyses mentioning this entity\n4. Add resource_cost column to hypotheses and analyses tables for quick access\n5. API endpoints: /api/resource-usage/{entity_type}/{entity_id}\n6. Calculate ROI: (composite_score * evidence_count) / tokens_spent","status":"open","priority":85,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":null,"updated_at":"2026-04-23T06:51:21.985344+00:00","summary":"","completion_notes":"","last_error":"cli-reopen-manual: reopened — task was marked 'done' but has no task_runs row in (done/completed/success)","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"claude","payload_json":"{}"},{"id":"7ef11ece-a3e0-4a0f-9bb7-5636bf55b991","title":"[Senate] Continuous architecture review — holistic codebase audit and API consistency","description":"Establish a recurring architecture review process for SciDEX:\n1. AUDIT: Review api.py (4000+ lines) for: dead code, undefined variables, duplicate routes, inconsistent patterns\n2. API COVERAGE: Ensure every data entity has proper REST endpoints (GET/POST/PUT/DELETE). Currently many pages render HTML but lack JSON API endpoints.\n3. CONSOLIDATION: Identify fragmented scripts (import_*.py, populate_*.py, migrations/*.py) and consolidate into a clean migration/import framework\n4. SEPARATION OF CONCERNS: Plan extraction of inline HTML/CSS from api.py into templates. Move business logic out of route handlers.\n5. DATA SAFETY: Before ANY refactoring, verify: no running worktrees depend on changed code, no data loss possible, all DB columns preserved\n6. REVIEW DOCS: Read QUESTS.md, AGENTS.md, self-improve.md, pitch.html to understand system goals before proposing changes\n7. PLAN FIRST: Create detailed refactoring plan with rollback strategy before executing. Small, incremental changes only.\nThis is a RECURRING task — should be re-created after completion.","status":"open","priority":85,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":null,"updated_at":"2026-04-23T06:51:21.985344+00:00","summary":"","completion_notes":"","last_error":"cli-reopen-manual: reopened — task was marked 'archived' but has no task_runs row in (done/completed/success)","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"claude","payload_json":"{}"},{"id":"1ee8c830-cdf9-42a2-9ebc-10173091cc64","title":"[Senate] Agent performance dashboard — track which agents produce best hypotheses","description":"Build a dashboard showing agent performance: debate quality scores, hypothesis score improvements, tool usage efficiency.","status":"open","priority":85,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":null,"updated_at":"2026-04-23T06:51:21.985344+00:00","summary":"","completion_notes":"","last_error":"cli-reopen-manual: reopened — task was marked 'archived' but has no task_runs row in (done/completed/success)","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"claude","payload_json":"{}"},{"id":"e784995c-1188-4d74-8d06-056789a8d840","title":"[Senate] World-model-aware project ranking","description":"Rank analyses by world model contribution. Score = 0.3*kg_impact + 0.25*hypothesis_quality + 0.2*entity_centrality + 0.15*gaps_resolved + 0.1*citations. Store as world_model_rank. Acceptance: all analyses ranked; /analyses/ defaults to rank sort; top 3 on dashboard.","status":"open","priority":85,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":null,"updated_at":"2026-04-23T06:51:21.985344+00:00","summary":"","completion_notes":"","last_error":"cli-reopen-manual: reopened — task was marked 'done' but has no task_runs row in (done/completed/success)","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/e784995c-118_senate_world-model-aware__spec.md","provider":"claude","payload_json":"{}"},{"id":"6d6eb330-f411-4fbb-8fa7-5cf55a79728e","title":"[Senate] Review and close 15 stale governance decisions older than 30 days","description":"Governance decisions that are pending for over 30 days block the artifact lifecycle. They need to be reviewed and either approved, rejected, or escalated.\n\n## Steps\n1. Query: `SELECT id, decision_type, proposed_at, artifact_ids, rationale, status FROM governance_decisions WHERE status = 'pending' AND proposed_at < NOW() - INTERVAL '30 days' ORDER BY proposed_at ASC LIMIT 15`\n2. For each stale decision: check if the artifact still exists and is relevant\n3. Apply a default resolution: if decision_type='archive' and artifact quality_score < 0.2 → approve; if 'merge' and similarity >= 0.8 → approve; otherwise → reject with rationale\n4. Update governance_decisions.status and log result\n\n## Acceptance Criteria\n- [ ] 15 stale governance decisions reviewed\n- [ ] Each decision resolved (approved/rejected) with documented rationale\n- [ ] Artifact lifecycle_state updated where decisions were approved\n- [ ] Changes committed and pushed","status":"open","priority":85,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-23T06:10:38.446032+00:00","updated_at":"2026-04-23T06:10:38.446032+00:00","summary":"","completion_notes":"","last_error":"rate_limit_retries_exhausted:glm","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_engine_governance_decision_triage_spec.md","provider":"any","payload_json":"{}"},{"id":"1a94b608-fd8a-40ab-a14e-1204c7af48c7","title":"[Senate] Register 15 recently active agents missing from agent_registry","description":"New workers appear in task completion logs (assigned_worker field) that are not registered in agent_registry, preventing them from receiving reputation scores and rewards.\n\n## Steps\n1. Query: `SELECT DISTINCT assigned_worker FROM tasks WHERE assigned_worker != '' AND assigned_worker IS NOT NULL AND updated_at > NOW() - INTERVAL '7 days' AND assigned_worker NOT IN (SELECT agent_id FROM agent_registry)`\n2. For each unregistered worker: extract the provider and slot from the worker ID format (e.g., 'glm-5:62' → provider='glm', slot=62)\n3. Insert into agent_registry with initial reputation_score=50, status='active', registered_at=NOW()\n4. Verify via SELECT COUNT(*) FROM agent_registry after insertion\n\n## Acceptance Criteria\n- [ ] All unregistered workers from last 7 days identified\n- [ ] agent_registry rows created for each missing agent\n- [ ] Changes committed and pushed","status":"open","priority":84,"task_type":"one_shot","frequency":"","assigned_slot":"73","started_at":"2026-04-23 06:00:44","completed_at":"","updated_at":"2026-04-23T06:02:28.648481+00:00","summary":"","completion_notes":"Inspect `git diff origin/main..HEAD`, rebase or merge origin/main into the task branch, and resolve only task-relevant conflicts before retrying.\n\nChanged files:\n- .orchestra/config.yaml\n- docs/planning/specs/2310c378_ea0_spec.md\n- scidex/senate/agent_registry.py\n\nDiff stat:\n.orchestra/config.yaml                   | 62 --------------------------------\n docs/planning/specs/2310c378_ea0_spec.md | 35 ------------------\n scidex/senate/agent_registry.py          | 13 +++++++\n 3 files changed, 13 insertions(+), 97 deletions(-)","last_error":"Review gate REVISE attempt 2/10: Auto-deploy blocked: Merge failed (conflicts?):","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{\"_gate_retry_count\": 2, \"_gate_last_decision\": \"REVISE\", \"_gate_last_reason\": \"Auto-deploy blocked: Merge failed (conflicts?):\", \"_gate_branch\": \"orchestra/task/1a94b608-register-15-recently-active-agents-missi\", \"_gate_changed_files\": [\".orchestra/config.yaml\", \"docs/planning/specs/2310c378_ea0_spec.md\", \"scidex/senate/agent_registry.py\"], \"_gate_diff_stat\": \".orchestra/config.yaml                   | 62 --------------------------------\\n docs/planning/specs/2310c378_ea0_spec.md | 35 ------------------\\n scidex/senate/agent_registry.py          | 13 +++++++\\n 3 files changed, 13 insertions(+), 97 deletions(-)\", \"_gate_history\": [{\"ts\": \"2026-04-23 05:48:00\", \"decision\": \"REVISE\", \"reason\": \"Auto-deploy blocked: Push failed: To https://github.com/SciDEX-AI/SciDEX.git\\n ! [remote rejected]     main -> main (cannot lock ref 'refs/heads/main': is at f9ed5892b87a1e8c8ae361708da307cab262e986 but expected d28cd2ca493b3008e0ab3ca\", \"instructions\": \"\", \"judge_used\": \"\", \"actor\": \"minimax:73\", \"retry_count\": 1}, {\"ts\": \"2026-04-23 06:00:44\", \"decision\": \"REVISE\", \"reason\": \"Auto-deploy blocked: Merge failed (conflicts?):\", \"instructions\": \"Inspect `git diff origin/main..HEAD`, rebase or merge origin/main into the task branch, and resolve only task-relevant conflicts before retrying.\", \"judge_used\": \"\", \"actor\": \"minimax:73\", \"retry_count\": 2}], \"_gate_last_instructions\": \"Inspect `git diff origin/main..HEAD`, rebase or merge origin/main into the task branch, and resolve only task-relevant conflicts before retrying.\"}"},{"id":"0081dfd3-8913-4c06-993d-0c51d284410e","title":"[Senate] Triage 30 open governance decisions for vote readiness","description":"30 rows in `governance_decisions` have status='open' or 'proposed' and have not advanced to voting. For each: check if required_approvals have been received, verify the artifact it targets still exists (using artifact_registry.resolve_artifact()), check if the decision type (archive/deprecate/merge/promote) is still valid given current artifact state. Mark decisions as 'ready_to_vote', 'resolved', or 'stale' accordingly. Update status via POST /api/governance/decisions/{id}/advance. Acceptance: 30 decisions triaged, none left in ambiguous 'proposed' state without a next-step status.","status":"open","priority":84,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"","updated_at":"2026-04-23T01:41:44.980178+00:00","summary":"","completion_notes":null,"last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{}"},{"id":"4acdb148-2985-41d9-aeb7-161a16f03d8d","title":"[Senate] Backfill historical resource usage from debate_rounds","description":"The debate_rounds table already has tokens_used per round. Backfill resource_usage:\n\n1. For each debate_round, create a resource_usage entry with: entity_type=analysis, entity_id=analysis_id, resource_type=bedrock_tokens, amount=tokens_used, model_id from the round\n2. Sum tokens per analysis and update analyses table with total_tokens_used\n3. Sum tokens per hypothesis (through analysis linkage) and estimate per-hypothesis cost\n4. Also backfill from agent_performance table (83 rows of historical data)\n5. Create summary view showing cumulative resource consumption over time","status":"open","priority":83,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":null,"updated_at":"2026-04-23T06:51:21.985344+00:00","summary":"","completion_notes":"","last_error":"cli-reopen-manual: reopened — task was marked 'done' but has no task_runs row in (done/completed/success)","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{}"},{"id":"cd2d8e45-3166-4108-b241-c1006377b59b","title":"[Senate] Automated quality gates — flag hypotheses with missing evidence or low scores","description":"Create automated quality checks: hypotheses without evidence, debates without synthesis, analyses without KG edges. Surface on /senate.","status":"open","priority":83,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":null,"updated_at":"2026-04-23T06:51:21.985344+00:00","summary":"","completion_notes":"","last_error":"cli-reopen-manual: reopened — task was marked 'archived' but has no task_runs row in (done/completed/success)","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{}"},{"id":"ef6f8785-3290-4647-8885-34fa541baf40","title":"[Senate] Site health check — verify all main pages render correctly","description":"Curl all main routes (/dashboard, /hypotheses, /analyses, /wiki, /exchange, /forge, /atlas, /senate, /demo). Report and fix 4xx/5xx errors.","status":"open","priority":80,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-25T15:58:22.335541+00:00","updated_at":"2026-04-25T15:58:22.335541+00:00","summary":"","completion_notes":"Auto-release: non-recurring task produced no commits this iteration; requeuing for next cycle","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"claude","payload_json":"{\"requirements\": {\"coding\": 8, \"reasoning\": 8, \"analysis\": 8}}"},{"id":"60437d56-6df4-4e97-b2f1-0eb5598a3f83","title":"[Senate] Implement quality gates for new analyses","description":"Add quality gate checks in post_process.py: (1) evidence gate: hypotheses must cite real PMIDs, (2) score gate: composite scores must be 0-1, (3) specificity gate: hypotheses must name specific genes/proteins. Log gate results in agent_performance table. Acceptance: gates run on every new analysis; gate failures logged.","status":"open","priority":80,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":null,"updated_at":"2026-04-23T06:51:21.985344+00:00","summary":"","completion_notes":"","last_error":"cli-reopen-manual: reopened — task was marked 'done' but has no task_runs row in (done/completed/success)","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{}"},{"id":"d5cc6ada-a31d-448e-bc3d-b7acebb1cae8","title":"[Senate] Allocation proposals and governance mechanism","description":"Build the proposal system for requesting more resources:\n1. Create allocation_proposals table: id, entity_type, entity_id, proposer_agent, requested_tokens, justification, evidence_pmids, status (pending/approved/rejected), created_at\n2. Auto-generate proposals when: a hypothesis score rises significantly, new evidence is found, a knowledge gap is partially filled\n3. Senate governance: proposals need evidence threshold (>= 2 PMIDs) and justification quality score\n4. Add /api/proposals endpoint and /senate/proposals UI\n5. Implement approval logic: auto-approve if evidence_strength > 0.7, queue for review otherwise","status":"open","priority":80,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":null,"updated_at":"2026-04-23T06:51:21.985344+00:00","summary":"","completion_notes":"","last_error":"cli-reopen-manual: reopened — task was marked 'done' but has no task_runs row in (done/completed/success)","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{}"},{"id":"aa34f751-b015-403a-8d95-e4da81919f2a","title":"[Senate] Site health check — verify all main pages render correctly","description":"IMPORTANT: Before implementing, verify this work hasn't already been done. Check api.py routes, git log, and the live site. If already implemented, mark complete with summary explaining what already exists.\n\nCurl all main routes (/dashboard, /hypotheses, /analyses, /wiki, /exchange, /forge, /atlas, /senate, /demo). Report and fix 4xx/5xx errors.","status":"open","priority":80,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":null,"updated_at":"2026-04-23T06:51:21.985344+00:00","summary":"","completion_notes":"","last_error":"cli-reopen-manual: reopened — task was marked 'done' but has no task_runs row in (done/completed/success)","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"claude","payload_json":"{\"requirements\": {\"coding\": 8, \"reasoning\": 8, \"analysis\": 8}}"},{"id":"340d5ea2-9f9d-4489-abdd-4f3098793f56","title":"[Senate] Site health check — verify all main pages render correctly","description":"IMPORTANT: Before implementing, verify this work hasn't already been done. Check api.py routes, git log, and the live site. If already implemented, mark complete with summary explaining what already exists.\n\nCurl all main routes (/dashboard, /hypotheses, /analyses, /wiki, /exchange, /forge, /atlas, /senate, /demo). Report and fix 4xx/5xx errors.","status":"open","priority":80,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":null,"updated_at":"2026-04-23T06:51:21.985344+00:00","summary":"","completion_notes":"","last_error":"cli-reopen-manual: reopened — task was marked 'done' but has no task_runs row in (done/completed/success)","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"claude","payload_json":"{\"requirements\": {\"coding\": 8, \"reasoning\": 8, \"analysis\": 8}}"},{"id":"0bd87fd8-f1e9-48f9-9edd-6b74b57903f2","title":"[Senate] Site health check — verify all main pages render correctly","description":"IMPORTANT: Before implementing, verify this work hasn't already been done. Check api.py routes, git log, and the live site. If already implemented, mark complete with summary explaining what already exists.\n\nCurl all main routes (/dashboard, /hypotheses, /analyses, /wiki, /exchange, /forge, /atlas, /senate, /demo). Report and fix 4xx/5xx errors.","status":"open","priority":80,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":null,"updated_at":"2026-04-23T06:51:21.985344+00:00","summary":"","completion_notes":"","last_error":"cli-reopen-manual: reopened — task was marked 'done' but has no task_runs row in (done/completed/success)","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"claude","payload_json":"{\"requirements\": {\"analysis\": 5, \"safety\": 7}, \"completion_shas\": [\"73b31e6be1c3ed688942e35c6600f057e25caa0e\"], \"completion_shas_checked_at\": \"2026-04-11T09:42:03.929319+00:00\"}"},{"id":"caf93615-1ce2-4563-82db-30564b75a318","title":"[Senate] Agent performance tracking","description":"S5.1: Populate agent_performance table (currently 0 rows). Record per-persona metrics after each debate: quality_score, tokens_used, latency_ms. Backfill from existing debate transcripts where possible.\n\nAcceptance: agent_performance has rows. Per-persona quality trends queryable.","status":"open","priority":80,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":null,"updated_at":"2026-04-23T06:51:21.985344+00:00","summary":"","completion_notes":"","last_error":"cli-reopen-manual: reopened — task was marked 'done' but has no task_runs row in (done/completed/success)","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/caf93615_1ce_agent_performance_tr_spec.md","provider":"any","payload_json":"{}"},{"id":"c0dea932-2b04-4d3e-bceb-5a1e8d1ec057","title":"[Senate] Backfill agent_performance from existing debates","description":"The agent_performance table has 0 rows. Parse all 22 debate transcripts to extract per-persona metrics: token count, quality indicators, evidence citations. Populate agent_performance. Acceptance: agent_performance has rows for each debate persona across all 22 analyses.","status":"open","priority":78,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":null,"updated_at":"2026-04-23T06:51:21.985344+00:00","summary":"","completion_notes":"","last_error":"cli-reopen-manual: reopened — task was marked 'done' but has no task_runs row in (done/completed/success)","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{}"},{"id":"c2e41376-87e3-42d5-b662-3d2eb7c51c02","title":"[Senate] Quality gates implementation","description":"Implement quality gates in post_process.py: 1) Evidence gate: reject hypotheses with 0 PubMed citations, 2) Score gate: reject composite_score outside 0-1, 3) Specificity gate: reject hypotheses without named genes/proteins. Log rejections to agent_performance table.","status":"open","priority":77,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":null,"updated_at":"2026-04-23T06:51:21.985344+00:00","summary":"","completion_notes":"","last_error":"cli-reopen-manual: reopened — task was marked 'done' but has no task_runs row in (done/completed/success)","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{}"},{"id":"54af1c16-9cf2-4310-a4a8-50c5124345a9","title":"[Senate] KG connectivity scoring for hypotheses","description":"Add kg_connectivity_score per hypothesis: degree centrality of target, pathway connections, neighbor-sharing hypotheses, bridge detection. 11th scoring dimension on Exchange. Acceptance: all 118 hypotheses scored; shown on detail pages; factored into composite_score; radar charts updated.","status":"open","priority":77,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":null,"updated_at":"2026-04-23T06:51:21.985344+00:00","summary":"","completion_notes":"","last_error":"cli-reopen-manual: reopened — task was marked 'done' but has no task_runs row in (done/completed/success)","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/54af1c16-9cf_senate_kg_connectivity_sc_spec.md","provider":"any","payload_json":"{}"},{"id":"d1c846c1-a58a-4999-8a35-149ea9e02b14","title":"[Senate] Resource ROI dashboard and optimization","description":"Build analytics for resource allocation effectiveness:\n1. Calculate ROI per hypothesis: (KG edges gained + evidence citations + score changes) / tokens spent\n2. Calculate ROI per analysis: (hypotheses generated * avg quality) / total debate tokens\n3. Identify underperforming allocations (high spend, low output)\n4. Identify high-potential underfunded areas (strong evidence, low allocation)\n5. Add ROI metrics to /senate dashboard\n6. Generate reallocation recommendations","status":"open","priority":75,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-25T16:24:58.471138+00:00","updated_at":"2026-04-25T16:24:58.471138+00:00","summary":"","completion_notes":"Auto-release: non-recurring task produced no commits this iteration; requeuing for next cycle","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{}"},{"id":"d167fe72-0b24-47fd-9b19-a261cd67ee19","title":"[Senate] Quality gates for hypotheses","description":"S5.2: Implement three quality gates in post_process.py:\n- Gate 1 (Evidence): Must have evidence_for citations\n- Gate 2 (Score): composite_score > 0.3\n- Gate 3 (Specificity): Must name a target_gene\nOnly hypotheses passing all 3 gates show on Exchange by default. Add toggle to show all.\n\nAcceptance: Exchange filters unverified hypotheses by default. Toggle reveals them.","status":"open","priority":75,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-25T13:52:07.332098+00:00","updated_at":"2026-04-25T13:52:07.332098+00:00","summary":"","completion_notes":"Auto-release: non-recurring task produced no commits this iteration; requeuing for next cycle","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/d167fe72_0b2_quality_gates_for_hy_spec.md","provider":"any","payload_json":"{}"},{"id":"8ba4a2bd-7219-4152-966c-f1060749696a","title":"[Senate] Failed analysis tracking","description":"S5.3: Handle orchestrator failures gracefully. If Claude errors, JSON parsing fails, or 0 hypotheses extracted, set analysis status='failed' with failure_reason. Add failure_reason column to analyses table. Show failed analyses separately on index.\n\nAcceptance: Failed analyses tracked, not silently lost. Failure count on dashboard.","status":"open","priority":70,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-25T16:42:34.459011+00:00","updated_at":"2026-04-25T16:42:34.459011+00:00","summary":"","completion_notes":"Auto-release: non-recurring task produced no commits this iteration; requeuing for next cycle","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/8ba4a2bd_721_failed_analysis_trac_spec.md","provider":"any","payload_json":"{\"requirements\": {\"coding\": 7, \"reasoning\": 7, \"analysis\": 8}}"},{"id":"5c3db5c6-6cbe-46ff-8a8e-f5e98180a999","title":"[Senate] /senate governance dashboard","description":"S5.4: Add GET /senate to api.py showing: agent performance over time, quality gate pass/fail rates, failed analyses with reasons, system health (analyses/day, hypotheses/analysis, edge growth rate).\n\nAcceptance: /senate page shows governance overview with real data.","status":"open","priority":65,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":null,"updated_at":"2026-04-23T06:51:21.985344+00:00","summary":"","completion_notes":"","last_error":"cli-reopen-manual: reopened — task was marked 'done' but has no task_runs row in (done/completed/success)","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/5c3db5c6_6cb_senate_governance_d_spec.md","provider":"any","payload_json":"{}"},{"id":"58b85979-11ce-4375-813b-f36afb7ac570","title":"[Senate] Event bus population - emit events for key system actions","description":"events table has 0 rows. The event_bus.py module exists but nothing emits events. Add event emission to: new analysis creation, hypothesis scoring, KG edge addition, tool invocations. This enables the Senate to track system activity.","status":"open","priority":64,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":null,"updated_at":"2026-04-23T06:51:21.985344+00:00","summary":"","completion_notes":"","last_error":"cli-reopen-manual: reopened — task was marked 'done' but has no task_runs row in (done/completed/success)","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{}"},{"id":"e57a285f-fa23-41d7-80d4-802cc03b7f17","title":"[Senate] Gap-to-KG alignment dashboard","description":"Enhance /gaps to show KG context per gap: involved entities, existing edges, missing edges, resolving hypotheses. KG coverage percentage. Acceptance: entity tags shown; coverage metric; sortable by coverage; resolved gaps show new KG edges produced.","status":"open","priority":62,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":null,"updated_at":"2026-04-23T06:51:21.985344+00:00","summary":"","completion_notes":"","last_error":"cli-reopen-manual: reopened — task was marked 'done' but has no task_runs row in (done/completed/success)","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/e57a285f-fa2_senate_gap-to-kg_alignmen_spec.md","provider":"any","payload_json":"{}"},{"id":"t-report-cards-hyp","title":"Hypothesis quality report cards with letter grades and percentile ranks","description":"","status":"open","priority":55,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":null,"updated_at":"2026-04-25T07:47:19.347429+00:00","summary":"","completion_notes":"","last_error":"cli-reopen-manual: reopened — task was marked 'done' but has no task_runs row in (done/completed/success)","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"claude","payload_json":"{}"},{"id":"05edda25-15b5-4e3e-bafa-4a711a356ec3","title":"[Senate] Self-evolution feedback loop","description":"S5.5: Every N analyses (default 5), run self-evaluation: aggregate agent_performance, identify weakest persona, adjust its system_prompt. Store prompt versions in prompt_versions table.\n\nAcceptance: After 5 analyses, system logs weakest persona and tries improved prompt. History queryable.","status":"open","priority":55,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":null,"updated_at":"2026-04-23T06:51:21.985344+00:00","summary":"","completion_notes":"","last_error":"cli-reopen-manual: reopened — task was marked 'done' but has no task_runs row in (done/completed/success)","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/05edda25_15b_self_evolution_feedb_spec.md","provider":"any","payload_json":"{}"},{"id":"600b46e9-c4ff-4362-8c80-d77e93dab779","title":"[Senate] Persona build — Peter Clark (peter-clark)","description":"Build the scientist persona for Peter Clark using scidex/ingest/mimeo_native.py.\n\nCommand: python -m scidex.ingest.mimeo_native \"Peter Clark\" --slug peter-clark --provider auto\n\nOutputs personas/peter-clark/SKILL.md + avatar.jpg + avatar-attribution.json. Commit and push via orchestra sync. Do NOT call persona_registry.register — that's a separate admission step.\n\nAcceptance: SKILL.md validates under scidex.senate.personas.schemas.PersonaBundle (pydantic), avatar.jpg written or needs_curator_photo flagged, attribution.json present when photo fetched.\n\nSpec: docs/planning/specs/quest_personas_spec.md","status":"blocked","priority":99,"task_type":"iterative","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-24T16:01:44.395698+00:00","updated_at":"2026-04-24T23:03:15.813933+00:00","summary":"","completion_notes":"Remove the two blocks at lines 777-780: delete `if stored_avatar_path.exists(): stored_avatar_path.unlink()` and `if attribution_path.exists(): attribution_path.unlink()` entirely.\nIn the else branch, only append the warning and set needs_curator_photo=true when stored_avatar_path does not already exist — if a prior avatar is already on disk, leave it untouched and skip both the warning and the unlink.\n\nChanged files:\n- .orchestra-slot.json\n- add_circuit_analysis_connections.py\n- analyses/SDA-2026-04-03-26abc5e5f9f2/circuit_analysis_report.json\n- api.py\n- docs/bio_competitive/parity_report.md\n- docs/planning/specs/1b911c77-4c4_exchange_ci_enrich_thin_hypotheses_expa_spec.md\n- docs/planning/specs/2df0bbef-e95e-4078-9383-45e0da7b4178_spec.md\n- docs/planning/specs/5ba5880a_demo_generate_figures_for_all_analyses_spec.md\n- docs/planning/specs/6317ae0d-4227_notebooks_endpoint_500_spec.md\n- docs/planning/specs/70265367_generate_figures_for_all_analyses_with_debates_spec.md\n- docs/planning/specs/8261beb1_generate_figures_for_all_analyses_with_debates_spec.md\n- docs/planning/specs/8a0f4dbf-435_exchange_bulk_enrich_hypotheses_expand_spec.md\n- docs/planning/specs/8afebaa6_generate_figures_spec.md\n- docs/planning/specs/93a2b028_d93_spec.md\n- docs/planning/specs/a17-02-87c1c845_artifacts_jupyter_notebook_spec.md\n- docs/planning/specs/d16-07-E4F36058_spec.md\n- docs/planning/specs/d16_04_BC3E8EEA_mol_3d_protein_viewer_hypothesis_spec.md\n- docs/planning/specs/d16_08_7273E0A5_demo_wiki_mermaid_crosslinks_spec.md\n- docs/planning/specs/e8d6786c_generate_figures_for_all_analyses_with_debates_spec.md\n- docs/planning/specs/economics_framework_spec.md\n- docs/planning/specs/linkcheck_ce06c28c_spec.md\n- docs/planning/specs/q01-a2-02DB4D5F_agora_aging_mouse_brain_spec.md\n- docs/planning/specs/quest_personas_spec.md\n- enrich_thin_hypotheses.py\n- forge/biomni_parity/rescore_debates.py\n- migrations/121_resource_allocation_economics.py\n- nginx-scidex.conf\n- personas/jay-shendure/SKILL.md\n- personas/jay-shendure/avatar-attribution.json\n- personas/jay-shendure/avatar.jpg\n- personas/troy-torgerson/SKILL.md\n- personas/troy-torgerson/author_manifest.json\n- post_process.py\n- scidex/agora/figure_generator.py\n- scidex/ingest/mimeo_native.py\n- scripts/enrich_demo_wiki_pages_d16_08_7273E0A5.py\n- scripts/fix_aging_analysis.py\n- scripts/oneoff_scripts/enrich_thin_hypotheses_4c26d99c.py\n- scripts/oneoff_scripts/enrich_thin_hypotheses_9522557b.py\n- scripts/oneoff_scripts/enrich_thin_hypotheses_b404e29c.py\n\nDiff stat:\n.orchestra-slot.json                               |    2 +-\n add_circuit_analysis_connections.py                |  194 -\n .../circuit_analysis_report.json                   |  179 -\n api.py                                             |   78 +-\n docs/bio_competitive/parity_report.md              |   73 +-\n ...exchange_ci_enrich_thin_hypotheses_expa_spec.md |    9 -\n .../2df0bbef-e95e-4078-9383-45e0da7b4178_spec.md   |   35 -\n ..._demo_generate_figures_for_all_analyses_spec.md ","last_error":"validator LLM call crashed: RuntimeError(\"All LLM providers failed. Last error: CLI harness codex_cli returned exit 1: Error: No such file or directory (os error 2)\\n. Tried: ['minimax', 'glm', 'claude_cli', 'codex_cli']. Check API keys and provider availability.\")","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_personas_spec.md","provider":"any","payload_json":"{\"_gate_retry_count\": 5, \"_gate_last_decision\": \"REJECT\", \"_gate_last_reason\": \"scidex/ingest/mimeo_native.py lines 777-780 still contain the two unlink() calls (stored_avatar_path.unlink() and attribution_path.unlink()) in the else branch that triggers on any failed photo fetch, deleting pre-existing curator-provided avatar.jpg and avatar-attribution.json \\u2014 the identical data-loss regression flagged in all four prior reviews remains unaddressed.\", \"_gate_judge_used\": \"max:claude-sonnet-4-6\", \"_gate_last_instructions\": \"Remove the two blocks at lines 777-780: delete `if stored_avatar_path.exists(): stored_avatar_path.unlink()` and `if attribution_path.exists(): attribution_path.unlink()` entirely.\\nIn the else branch, only append the warning and set needs_curator_photo=true when stored_avatar_path does not already exist \\u2014 if a prior avatar is already on disk, leave it untouched and skip both the warning and the unlink.\", \"_gate_branch\": \"orchestra/task/600b46e9-persona-build-peter-clark-peter-clark\", \"_gate_changed_files\": [\".orchestra-slot.json\", \"add_circuit_analysis_connections.py\", \"analyses/SDA-2026-04-03-26abc5e5f9f2/circuit_analysis_report.json\", \"api.py\", \"docs/bio_competitive/parity_report.md\", \"docs/planning/specs/1b911c77-4c4_exchange_ci_enrich_thin_hypotheses_expa_spec.md\", \"docs/planning/specs/2df0bbef-e95e-4078-9383-45e0da7b4178_spec.md\", \"docs/planning/specs/5ba5880a_demo_generate_figures_for_all_analyses_spec.md\", \"docs/planning/specs/6317ae0d-4227_notebooks_endpoint_500_spec.md\", \"docs/planning/specs/70265367_generate_figures_for_all_analyses_with_debates_spec.md\", \"docs/planning/specs/8261beb1_generate_figures_for_all_analyses_with_debates_spec.md\", 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|  140 -\\n nginx-scidex.conf                                  |    7 +-\\n personas/jay-shendure/SKILL.md                     |   55 -\\n personas/jay-shendure/avatar-attribution.json      |    8 -\\n personas/jay-shendure/avatar.jpg                   |  Bin 36953 -> 0 bytes\\n personas/troy-torgerson/SKILL.md                   |    2 +-\\n personas/troy-torgerson/author_manifest.json       |   10 -\\n post_process.py        \", \"_gate_history\": [{\"ts\": \"2026-04-24 16:13:15\", \"decision\": \"REJECT\", \"reason\": \"`scidex/ingest/mimeo_native.py` now deletes `personas/<slug>/avatar.jpg` and `avatar-attribution.json` whenever a rebuild fails to fetch a photo, which is concrete data loss on transient network/extraction failures and can wipe curator-provided avatar state for existing personas.\", \"instructions\": \"Remove the `unlink()` calls in the `else` branch at `scidex/ingest/mimeo_native.py:814-818` and preserve any existing avatar/attribution files when no new photo is fetched.\\nIf no fresh photo is available, keep the previous files and only set `needs_curator_photo`/warning state when there is no existing stored avatar to fall back to.\", \"judge_used\": \"codex:codex\", \"actor\": \"minimax:75\", \"retry_count\": 1}, {\"ts\": \"2026-04-24 16:15:44\", \"decision\": \"REJECT\", \"reason\": \"The `unlink()` calls at `scidex/ingest/mimeo_native.py:816-818` that delete existing `avatar.jpg` and `avatar-attribution.json` on any failed photo fetch are still present \\u2014 identical to the concrete data-loss regression that caused Review 1's rejection.\", \"instructions\": \"Remove the `if stored_avatar_path.exists(): stored_avatar_path.unlink()` and `if attribution_path.exists(): attribution_path.unlink()` calls at lines 815-818 in the `else` branch.\\nWhen no fresh photo is fetched, keep any pre-existing avatar/attribution files intact and only set `needs_curator_photo=true` / append the warning when there is no existing avatar file to fall back to (i.e., `if not stored_avatar_path.exists(): bundle.warnings.append(...)`)\", \"judge_used\": \"max:claude-sonnet-4-6\", \"actor\": \"minimax:75\", \"retry_count\": 2}, {\"ts\": \"2026-04-24 16:19:08\", \"decision\": \"REJECT\", \"reason\": \"scidex/ingest/mimeo_native.py:815-818 still contains the unlink() calls that delete existing avatar.jpg and avatar-attribution.json on any failed photo fetch \\u2014 the concrete data-loss regression explicitly called out in both prior reviews remains unaddressed.\", \"instructions\": \"Remove the two unlink() blocks at lines 815-818 (the `if stored_avatar_path.exists(): stored_avatar_path.unlink()` and `if attribution_path.exists(): attribution_path.unlink()` calls); when no fresh photo is fetched, leave any pre-existing files intact and only append the warning / set needs_curator_photo=true when stored_avatar_path does not already exist.\", \"judge_used\": \"max:claude-sonnet-4-6\", \"actor\": \"minimax:75\", \"retry_count\": 3}, {\"ts\": \"2026-04-24 16:32:25\", \"decision\": \"REJECT\", \"reason\": \"scidex/ingest/mimeo_native.py lines 778-780 still contain the identical unlink() calls (stored_avatar_path.unlink() and attribution_path.unlink()) in the else branch that triggers on any failed photo fetch, deleting pre-existing curator-provided avatar.jpg and avatar-attribution.json \\u2014 the same concrete data-loss regression rejected in all three prior reviews.\", \"instructions\": \"Remove the two unlink() blocks at lines 777-780 entirely: delete `if stored_avatar_path.exists(): stored_avatar_path.unlink()` and `if attribution_path.exists(): attribution_path.unlink()`.\\nIn the else branch, only append the warning and set needs_curator_photo=true when `not stored_avatar_path.exists()` \\u2014 if a prior avatar already exists on disk, leave it untouched and skip both the warning and the flag (or keep the warning but still do not delete the file).\", \"judge_used\": \"max:claude-sonnet-4-6\", \"actor\": \"minimax:75\", \"retry_count\": 4}, {\"ts\": \"2026-04-24 16:40:26\", \"decision\": \"REJECT\", \"reason\": \"scidex/ingest/mimeo_native.py lines 777-780 still contain the two unlink() calls (stored_avatar_path.unlink() and attribution_path.unlink()) in the else branch that triggers on any failed photo fetch, deleting pre-existing curator-provided avatar.jpg and avatar-attribution.json \\u2014 the identical data-loss regression flagged in all four prior reviews remains unaddressed.\", \"instructions\": \"Remove the two blocks at lines 777-780: delete `if stored_avatar_path.exists(): stored_avatar_path.unlink()` and `if attribution_path.exists(): attribution_path.unlink()` entirely.\\nIn the else branch, only append the warning and set needs_curator_photo=true when stored_avatar_path does not already exist \\u2014 if a prior avatar is already on disk, leave it untouched and skip both the warning and the unlink.\", \"judge_used\": \"max:claude-sonnet-4-6\", \"actor\": \"minimax:75\", \"retry_count\": 5}]}"},{"id":"afc78b0c-2e9f-4dac-91c2-43ef1ef0c0bd","title":"[Senate] Persona build — Jay Shendure (jay-shendure)","description":"Build the scientist persona for Jay Shendure using scidex/ingest/mimeo_native.py.\n\nCommand: python -m scidex.ingest.mimeo_native \"Jay Shendure\" --slug jay-shendure --allen-url \"https://alleninstitute.org/person/jay-shendure/\" --provider auto\n\nOutputs personas/jay-shendure/SKILL.md + avatar.jpg + avatar-attribution.json. Commit and push via orchestra sync. Do NOT call persona_registry.register — that's a separate admission step.\n\nAcceptance: SKILL.md validates under scidex.senate.personas.schemas.PersonaBundle (pydantic), avatar.jpg written or needs_curator_photo flagged, attribution.json present when photo fetched.\n\nSpec: docs/planning/specs/quest_personas_spec.md","status":"blocked","priority":99,"task_type":"iterative","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-24T14:46:26.410416+00:00","updated_at":"2026-04-24T16:21:00.306212+00:00","summary":"","completion_notes":"Before committing, run a verification query against PostgreSQL to confirm each deleted paper exists in the database, e.g.: SELECT COUNT(*) FROM papers WHERE pmid IN (...) OR SELECT doi FROM papers WHERE doi IN (...)\nIf all papers are confirmed in PostgreSQL, split the deletions into batches of ≤50 files per commit/push to stay within the pre-push hook limit\nIf papers are NOT in PostgreSQL, restore the deleted files from git and file a proper data-migration task before deleting them\nDocument the migration confirmation in .orchestra/hook_exemptions or in a commit message so reviewers can verify it\n\nChanged files:\n- .orchestra-slot.json\n- add_circuit_analysis_connections.py\n- analyses/SDA-2026-04-03-26abc5e5f9f2/circuit_analysis_report.json\n- api.py\n- backfill/backfill_papers_susan_kaech.py\n- data/papers/10189372.json\n- data/papers/10228153.json\n- data/papers/10386182.json\n- data/papers/10468626.json\n- data/papers/10966619.json\n- data/papers/11323695.json\n- data/papers/11416186.json\n- data/papers/11416192.json\n- data/papers/11598301.json\n- data/papers/11877489.json\n- data/papers/12001996.json\n- data/papers/12496394.json\n- data/papers/12526810.json\n- data/papers/12538706.json\n- data/papers/12563257.json\n- data/papers/12589682.json\n- data/papers/12597859.json\n- data/papers/12690179.json\n- data/papers/12692546.json\n- data/papers/12713942.json\n- data/papers/12759421.json\n- data/papers/12813024.json\n- data/papers/12941136.json\n- data/papers/14625547.json\n- data/papers/15023416.json\n- data/papers/15084659.json\n- data/papers/15452215.json\n- data/papers/15458838.json\n- data/papers/15494489.json\n- data/papers/15505208.json\n- data/papers/15728501.json\n- data/papers/15833813.json\n- data/papers/15975018.json\n- data/papers/16237050.json\n- data/papers/16237070.json\n\nDiff stat:\n.orchestra-slot.json                               |   10 +-\n add_circuit_analysis_connections.py                |  194 -\n .../circuit_analysis_report.json                   |  179 -\n api.py                                             |   78 +-\n backfill/backfill_papers_susan_kaech.py            |  323 --\n data/papers/10189372.json                          |   36 -\n data/papers/10228153.json                          |   46 -\n data/papers/10386182.json                          |   36 -\n data/papers/10468626.json                          |   36 -\n data/papers/10966619.json                          |   36 -\n data/papers/11323695.json                          |   66 -\n data/papers/11416186.json                          |   36 -\n data/papers/11416192.json                          |   36 -\n data/papers/11598301.json                          |   36 -\n data/papers/11877489.json                          |   92 -\n data/papers/12001996.json                          |   65 -\n data/papers/12496394.json                          |   77 -\n data/papers/12526810.json                          |   78 -\n data/papers/12538706.json                          |   80 -\n data/papers/12563257.json             ","last_error":"validator LLM call crashed: RuntimeError(\"All LLM providers failed. Last error: CLI harness codex_cli returned exit 1: Error: No such file or directory (os error 2)\\n. Tried: ['minimax', 'glm', 'claude_cli', 'codex_cli']. Check API keys and provider availability.\")","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_personas_spec.md","provider":"any","payload_json":"{\"_gate_retry_count\": 6, \"_gate_last_decision\": \"REJECT\", \"_gate_last_reason\": \"The diff continues to delete hundreds of paper JSON files from data/papers/ without any confirmation that these papers have been migrated to PostgreSQL \\u2014 the same unverified data loss that caused four prior REJECTs\", \"_gate_branch\": \"orchestra/task/afc78b0c-persona-build-jay-shendure-jay-shendure\", \"_gate_changed_files\": [\".orchestra-slot.json\", \"add_circuit_analysis_connections.py\", \"analyses/SDA-2026-04-03-26abc5e5f9f2/circuit_analysis_report.json\", \"api.py\", \"backfill/backfill_papers_susan_kaech.py\", \"data/papers/10189372.json\", \"data/papers/10228153.json\", \"data/papers/10386182.json\", \"data/papers/10468626.json\", \"data/papers/10966619.json\", \"data/papers/11323695.json\", \"data/papers/11416186.json\", \"data/papers/11416192.json\", \"data/papers/11598301.json\", \"data/papers/11877489.json\", \"data/papers/12001996.json\", \"data/papers/12496394.json\", \"data/papers/12526810.json\", \"data/papers/12538706.json\", \"data/papers/12563257.json\", \"data/papers/12589682.json\", \"data/papers/12597859.json\", \"data/papers/12690179.json\", \"data/papers/12692546.json\", \"data/papers/12713942.json\", \"data/papers/12759421.json\", \"data/papers/12813024.json\", \"data/papers/12941136.json\", \"data/papers/14625547.json\", \"data/papers/15023416.json\", \"data/papers/15084659.json\", \"data/papers/15452215.json\", \"data/papers/15458838.json\", \"data/papers/15494489.json\", \"data/papers/15505208.json\", \"data/papers/15728501.json\", \"data/papers/15833813.json\", \"data/papers/15975018.json\", \"data/papers/16237050.json\", \"data/papers/16237070.json\", \"data/papers/16273099.json\", \"data/papers/1707141.json\", \"data/papers/17129212.json\", \"data/papers/17215396.json\", \"data/papers/17406484.json\", \"data/papers/17609371.json\", \"data/papers/17723218.json\", \"data/papers/17890163.json\", \"data/papers/17892848.json\", \"data/papers/17950003.json\", \"data/papers/18073383.json\", \"data/papers/18209024.json\", \"data/papers/18390712.json\", \"data/papers/18629449.json\", \"data/papers/18641323.json\", \"data/papers/18768833.json\", \"data/papers/19201385.json\", \"data/papers/19201839.json\", \"data/papers/19497720.json\", \"data/papers/19657032.json\", \"data/papers/19664941.json\", \"data/papers/20032309.json\", \"data/papers/20410488.json\", \"data/papers/20519643.json\", \"data/papers/20536566.json\", \"data/papers/20547757.json\", \"data/papers/20636815.json\", \"data/papers/20660705.json\", \"data/papers/20823247.json\", \"data/papers/20862690.json\", \"data/papers/20870171.json\", \"data/papers/20921525.json\", \"data/papers/21335230.json\", \"data/papers/21641396.json\", \"data/papers/2168992.json\", \"data/papers/21917752.json\", \"data/papers/21930973.json\", \"data/papers/22018471.json\", \"data/papers/22118527.json\", \"data/papers/22167808.json\", \"data/papers/22383651.json\", \"data/papers/22383652.json\", \"data/papers/22383653.json\", \"data/papers/22484047.json\", \"data/papers/22514323.json\", \"data/papers/22653977.json\", \"data/papers/23011031.json\", \"data/papers/23080391.json\", \"data/papers/23623381.json\", \"data/papers/23772040.json\", \"data/papers/23973217.json\", \"data/papers/24120360.json\", \"data/papers/24238342.json\", \"data/papers/24443505.json\", \"data/papers/24631156.json\", \"data/papers/24647935.json\", \"data/papers/24659688.json\", \"data/papers/24736544.json\", \"data/papers/2480561.json\", \"data/papers/25003188.json\"], \"_gate_diff_stat\": \".orchestra-slot.json                               |   10 +-\\n add_circuit_analysis_connections.py                |  194 -\\n .../circuit_analysis_report.json                   |  179 -\\n api.py                                             |   78 +-\\n backfill/backfill_papers_susan_kaech.py            |  323 --\\n data/papers/10189372.json                          |   36 -\\n data/papers/10228153.json                          |   46 -\\n data/papers/10386182.json                          |   36 -\\n data/papers/10468626.json                          |   36 -\\n data/papers/10966619.json                          |   36 -\\n data/papers/11323695.json                          |   66 -\\n data/papers/11416186.json                          |   36 -\\n data/papers/11416192.json                          |   36 -\\n data/papers/11598301.json                          |   36 -\\n data/papers/11877489.json                          |   92 -\\n data/papers/12001996.json                          |   65 -\\n data/papers/12496394.json                          |   77 -\\n data/papers/12526810.json                          |   78 -\\n data/papers/12538706.json                          |   80 -\\n data/papers/12563257.json                          |   89 -\\n data/papers/12589682.json                          |   36 -\\n data/papers/12597859.json                          |   36 -\\n data/papers/12690179.json                          |   50 -\\n data/papers/12692546.json                          |   79 -\\n data/papers/12713942.json                          |   73 -\\n data/papers/12759421.json                          |   86 -\\n data/papers/12813024.json                          |  113 -\\n data/papers/12941136.json                          |   93 -\\n data/papers/14625547.json                          |   85 -\\n data/papers/15023416.json                          |   89 -\\n data/papers/15084659.json                          |   36 -\\n data/papers/15452215.json                          |   64 -\\n data/papers/15458838.json                    \", \"_gate_history\": [{\"ts\": \"2026-04-24 15:12:24\", \"decision\": \"REJECT\", \"reason\": \"The diff deletes 490 paper JSON files and a backfill script, exceeding the pre-push hook's 50-file deletion safety limit by 10x\\u2014this is unverified data loss at scale.\", \"instructions\": \"Confirm whether the deleted paper data has been migrated to a new location (e.g., PostgreSQL per the SQLite retirement plan)\\nIf migration occurred, reduce the deletion count below 50 files per push or add a pre-push hook exemption with justification\\nIf no migration exists, restore the paper data from git and file a proper data-migration task first\", \"judge_used\": \"glm:glm-4.5\", \"actor\": \"minimax:73\", \"retry_count\": 2}, {\"ts\": \"2026-04-24 15:32:59\", \"decision\": \"REJECT\", \"reason\": \"The diff still deletes 490 paper JSON files from data/papers/ in a single push, which (a) exceeds the pre-push safety hook's 50-file deletion limit and will be blocked again, and (b) represents potential data loss if these papers have not been confirmed as migrated to PostgreSQL.\", \"instructions\": \"Before deleting any data/papers/*.json files, confirm (e.g. via a SELECT COUNT query against the scidex PostgreSQL database) that all papers represented by the deleted files are present in the database.\\nEither split the file deletions into batches of \\u226450 per commit/push, or add a documented pre-push hook exemption (e.g. a .orchestra/hook_exemptions file) with explicit justification that the data is confirmed-migrated and the mass delete is intentional cleanup.\", \"judge_used\": \"max:claude-sonnet-4-6\", \"actor\": \"minimax:73\", \"retry_count\": 3}, {\"ts\": \"2026-04-24 15:34:32\", \"decision\": \"REJECT\", \"reason\": \"The diff still deletes paper JSON files from data/papers/ without any confirmed migration to PostgreSQL, representing the same unverified data loss that caused the two prior REJECTs \\u2014 this is a concrete data-loss regression under criterion #1.\", \"instructions\": \"Before deleting any data/papers/*.json files, run a SELECT COUNT(*) or SELECT doi FROM papers WHERE doi IN (...) query against the scidex PostgreSQL database to confirm every deleted file's paper is present in the database.\\nIf all papers are confirmed in PostgreSQL, split the deletions into batches of \\u226450 files per commit/push to stay within the pre-push safety hook limit, or add an explicit .orchestra/hook_exemptions entry with justification that the data is safely migrated.\\nIf migration cannot be confirmed, restore the paper JSON files from git and file a data-migration task before deleting them.\", \"judge_used\": \"max:claude-sonnet-4-6\", \"actor\": \"minimax:73\", \"retry_count\": 4}, {\"ts\": \"2026-04-24 15:48:07\", \"decision\": \"REJECT\", \"reason\": \"The diff explicitly reverts task-specified PDB IDs (TREM2: 6YXY\\u21925UD7, LRP1: 2FCW\\u21921CR8, SMPD1: 5I73\\u21925I85) that were just fixed as correct in commit 8afaf17b6, and the paper file deletions still lack confirmed PostgreSQL migration per the three prior REJECTs.\", \"instructions\": \"Remove all PDB ID changes \\u2014 the values TREM2=6YXY, LRP1=2FCW, SMPD1=5I73 are task-specified and must not be changed\\nBefore deleting any data/papers/*.json files, run SELECT COUNT(*) FROM papers or confirm via .orchestra/hook_exemptions with documented migration proof to PostgreSQL\", \"judge_used\": \"minimax:MiniMax-M2.7\", \"actor\": \"minimax:73\", \"retry_count\": 5}, {\"ts\": \"2026-04-24 16:10:39\", \"decision\": \"REJECT\", \"reason\": \"The diff continues to delete hundreds of paper JSON files from data/papers/ without any confirmation that these papers have been migrated to PostgreSQL \\u2014 the same unverified data loss that caused four prior REJECTs\", \"instructions\": \"Before committing, run a verification query against PostgreSQL to confirm each deleted paper exists in the database, e.g.: SELECT COUNT(*) FROM papers WHERE pmid IN (...) OR SELECT doi FROM papers WHERE doi IN (...)\\nIf all papers are confirmed in PostgreSQL, split the deletions into batches of \\u226450 files per commit/push to stay within the pre-push hook limit\\nIf papers are NOT in PostgreSQL, restore the deleted files from git and file a proper data-migration task before deleting them\\nDocument the migration confirmation in .orchestra/hook_exemptions or in a commit message so reviewers can verify it\", \"judge_used\": \"glm:glm-4.5\", \"actor\": \"minimax:73\", \"retry_count\": 6}], \"_gate_judge_used\": \"glm:glm-4.5\", \"_gate_last_instructions\": \"Before committing, run a verification query against PostgreSQL to confirm each deleted paper exists in the database, e.g.: SELECT COUNT(*) FROM papers WHERE pmid IN (...) OR SELECT doi FROM papers WHERE doi IN (...)\\nIf all papers are confirmed in PostgreSQL, split the deletions into batches of \\u226450 files per commit/push to stay within the pre-push hook limit\\nIf papers are NOT in PostgreSQL, restore the deleted files from git and file a proper data-migration task before deleting them\\nDocument the migration confirmation in .orchestra/hook_exemptions or in a commit message so reviewers can verify it\"}"},{"id":"93c59cc1-7b55-4417-b7ca-56475158eb6d","title":"[Senate] Paper accumulation — Marion Pepper (marion-pepper)","description":"Accumulate published papers for Marion Pepper into the SciDEX papers cache. Target: OpenAlex + PubMed + Semantic Scholar lookups keyed by the scientist's name; if available, prefer ORCID for deterministic author resolution.\n\nProfile URL hint: (builder resolves from alleninstitute.org or allenai.org)\nPer the quest_paper_accumulation_spec: target ≥90% of expected paper count, or explain why not.\nSpec: docs/planning/specs/quest_paper_accumulation_spec.md","status":"done","priority":99,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-24T16:07:59.073147+00:00","updated_at":"2026-04-24T16:07:59.073147+00:00","summary":"","completion_notes":"Auto-release: non-recurring task produced no commits this iteration; requeuing for next cycle","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_paper_accumulation_spec.md","provider":"any","payload_json":"{}"},{"id":"318b8bff-52db-4c25-82e8-2e1decccc905","title":"[Senate] Persona build — Karel Svoboda (karel-svoboda)","description":"Build the scientist persona for Karel Svoboda using scidex/ingest/mimeo_native.py.\n\nCommand: python -m scidex.ingest.mimeo_native \"Karel Svoboda\" --slug karel-svoboda --allen-url \"https://alleninstitute.org/person/karel-svoboda-2/\" --provider auto\n\nOutputs personas/karel-svoboda/SKILL.md + avatar.jpg + avatar-attribution.json. Commit and push via orchestra sync. Do NOT call persona_registry.register — that's a separate admission step.\n\nAcceptance: SKILL.md validates under scidex.senate.personas.schemas.PersonaBundle (pydantic), avatar.jpg written or needs_curator_photo flagged, attribution.json present when photo fetched.\n\nSpec: docs/planning/specs/quest_personas_spec.md","status":"blocked","priority":99,"task_type":"iterative","frequency":"","assigned_slot":"","started_at":null,"completed_at":"","updated_at":"2026-04-24T15:54:15.935963+00:00","summary":"","completion_notes":"Rebase the branch onto current main: git checkout orchestra/task/318b8bff-persona-build-karel-svoboda-karel-svobod && git rebase main\nVerify the rebase resolves the deletion conflicts: git diff main should show only karel-svoboda additions, no persona deletions\nAfter rebase, use orchestra sync push to deploy\n\nChanged files:\n- .orchestra-slot.json\n- docs/planning/specs/51232c36_diagnostic_health_check_watchdog_13_abandons_spec.md\n- docs/planning/specs/e4ed2939-05f3-4638-b6a3-89095974aa61_debate_engine_cycle_spec.md\n- docs/planning/specs/e95cbcab_verify_health_check_post_fix_spec.md\n- docs/planning/specs/quest_paper_accumulation_spec.md\n- docs/planning/specs/quest_personas_spec.md\n- docs/planning/specs/scidex_economy_design_spec.md\n- docs/planning/specs/showcase_artifact_ui_spec.md\n- personas/andy-hickl/SKILL.md\n- personas/andy-hickl/avatar-attribution.json\n- personas/andy-hickl/avatar.jpg\n- personas/ed-lein/author_manifest.json\n- personas/jesse-gray/SKILL.md\n- personas/jesse-gray/avatar-attribution.json\n- personas/jesse-gray/avatar.jpg\n- personas/karel-svoboda/SKILL.md\n- personas/karel-svoboda/avatar-attribution.json\n- personas/karel-svoboda/avatar.jpg\n- personas/peter-clark/author_manifest.json\n- personas/ru-gunawardane/SKILL.md\n- personas/ru-gunawardane/avatar-attribution.json\n- personas/rui-costa/SKILL.md\n- personas/rui-costa/avatar.jpg\n- scidex/ingest/mimeo_native.py\n- scripts/accumulate_ed_lein_papers.py\n- scripts/accumulate_papers_peter_clark.py\n- scripts/accumulate_shoaib_mufti_papers.py\n\nDiff stat:\n.orchestra-slot.json                               |   7 +-\n ...ostic_health_check_watchdog_13_abandons_spec.md |  36 +-\n ...8-b6a3-89095974aa61_debate_engine_cycle_spec.md |  45 --\n .../e95cbcab_verify_health_check_post_fix_spec.md  |  49 +-\n .../specs/quest_paper_accumulation_spec.md         |  43 --\n docs/planning/specs/quest_personas_spec.md         |  41 +-\n docs/planning/specs/scidex_economy_design_spec.md  |  83 ---\n docs/planning/specs/showcase_artifact_ui_spec.md   |  36 +-\n personas/andy-hickl/SKILL.md                       |  68 ---\n personas/andy-hickl/avatar-attribution.json        |   8 -\n personas/andy-hickl/avatar.jpg                     | Bin 478824 -> 0 bytes\n personas/ed-lein/author_manifest.json              |  20 -\n personas/jesse-gray/SKILL.md                       |  55 --\n personas/jesse-gray/avatar-attribution.json        |   8 -\n personas/jesse-gray/avatar.jpg                     | Bin 478824 -> 0 bytes\n personas/karel-svoboda/SKILL.md                    |  71 +++\n .../avatar-attribution.json                        |   4 +-\n .../{ru-gunawardane => karel-svoboda}/avatar.jpg   | Bin\n personas/peter-clark/author_manifest.json          |  13 -\n personas/ru-gun","last_error":"validator LLM call crashed: RuntimeError(\"All LLM providers failed. Last error: CLI harness codex_cli returned exit 1: Error: No such file or directory (os error 2)\\n. Tried: ['minimax', 'glm', 'claude_cli', 'codex_cli']. Check API keys and provider availability.\")","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_personas_spec.md","provider":"any","payload_json":"{\"_gate_retry_count\": 2, \"_gate_last_decision\": \"REJECT\", \"_gate_last_reason\": \"Branch is stale and merging as-is would delete existing personas (andy-hickl, jesse-gray, ru-gunawardane, rui-costa) that were added to main after this branch was created - this is data loss of persona files that currently exist on main.\", \"_gate_branch\": \"orchestra/task/318b8bff-persona-build-karel-svoboda-karel-svobod\", \"_gate_changed_files\": [\".orchestra-slot.json\", \"docs/planning/specs/51232c36_diagnostic_health_check_watchdog_13_abandons_spec.md\", \"docs/planning/specs/e4ed2939-05f3-4638-b6a3-89095974aa61_debate_engine_cycle_spec.md\", \"docs/planning/specs/e95cbcab_verify_health_check_post_fix_spec.md\", \"docs/planning/specs/quest_paper_accumulation_spec.md\", \"docs/planning/specs/quest_personas_spec.md\", \"docs/planning/specs/scidex_economy_design_spec.md\", \"docs/planning/specs/showcase_artifact_ui_spec.md\", \"personas/andy-hickl/SKILL.md\", \"personas/andy-hickl/avatar-attribution.json\", \"personas/andy-hickl/avatar.jpg\", \"personas/ed-lein/author_manifest.json\", \"personas/jesse-gray/SKILL.md\", \"personas/jesse-gray/avatar-attribution.json\", \"personas/jesse-gray/avatar.jpg\", \"personas/karel-svoboda/SKILL.md\", \"personas/karel-svoboda/avatar-attribution.json\", \"personas/karel-svoboda/avatar.jpg\", \"personas/peter-clark/author_manifest.json\", \"personas/ru-gunawardane/SKILL.md\", \"personas/ru-gunawardane/avatar-attribution.json\", \"personas/rui-costa/SKILL.md\", \"personas/rui-costa/avatar.jpg\", \"scidex/ingest/mimeo_native.py\", \"scripts/accumulate_ed_lein_papers.py\", \"scripts/accumulate_papers_peter_clark.py\", \"scripts/accumulate_shoaib_mufti_papers.py\"], \"_gate_diff_stat\": \".orchestra-slot.json                               |   7 +-\\n ...ostic_health_check_watchdog_13_abandons_spec.md |  36 +-\\n ...8-b6a3-89095974aa61_debate_engine_cycle_spec.md |  45 --\\n .../e95cbcab_verify_health_check_post_fix_spec.md  |  49 +-\\n .../specs/quest_paper_accumulation_spec.md         |  43 --\\n docs/planning/specs/quest_personas_spec.md         |  41 +-\\n docs/planning/specs/scidex_economy_design_spec.md  |  83 ---\\n docs/planning/specs/showcase_artifact_ui_spec.md   |  36 +-\\n personas/andy-hickl/SKILL.md                       |  68 ---\\n personas/andy-hickl/avatar-attribution.json        |   8 -\\n personas/andy-hickl/avatar.jpg                     | Bin 478824 -> 0 bytes\\n personas/ed-lein/author_manifest.json              |  20 -\\n personas/jesse-gray/SKILL.md                       |  55 --\\n personas/jesse-gray/avatar-attribution.json        |   8 -\\n personas/jesse-gray/avatar.jpg                     | Bin 478824 -> 0 bytes\\n personas/karel-svoboda/SKILL.md                    |  71 +++\\n .../avatar-attribution.json                        |   4 +-\\n .../{ru-gunawardane => karel-svoboda}/avatar.jpg   | Bin\\n personas/peter-clark/author_manifest.json          |  13 -\\n personas/ru-gunawardane/SKILL.md                   |  67 ---\\n personas/ru-gunawardane/avatar-attribution.json    |   8 -\\n personas/rui-costa/SKILL.md                        |  63 ---\\n personas/rui-costa/avatar.jpg                      | Bin 40700 -> 0 bytes\\n scidex/ingest/mimeo_native.py                      | 118 +----\\n scripts/accumulate_ed_lein_papers.py               | 456 ----------------\\n scripts/accumulate_papers_peter_clark.py           | 587 ---------------------\\n scripts/accumulate_shoaib_mufti_papers.py          | 470 -----------------\\n 27 files changed, 159 insertions(+), 2197 deletions(-)\", \"_gate_history\": [{\"ts\": \"2026-04-24 14:15:38\", \"decision\": \"REVISE\", \"reason\": \"Auto-deploy blocked: checkout main failed: fatal: Unable to create '/home/ubuntu/scidex/.git/index.lock': File exists.\\n\\nAnother git process seems to be running in this repository, e.g.\\nan editor opened by 'git commit'. Please make sure all pro\", \"instructions\": \"\", \"judge_used\": \"\", \"actor\": \"minimax:74\", \"retry_count\": 1}, {\"ts\": \"2026-04-24 14:32:05\", \"decision\": \"REJECT\", \"reason\": \"Branch is stale and merging as-is would delete existing personas (andy-hickl, jesse-gray, ru-gunawardane, rui-costa) that were added to main after this branch was created - this is data loss of persona files that currently exist on main.\", \"instructions\": \"Rebase the branch onto current main: git checkout orchestra/task/318b8bff-persona-build-karel-svoboda-karel-svobod && git rebase main\\nVerify the rebase resolves the deletion conflicts: git diff main should show only karel-svoboda additions, no persona deletions\\nAfter rebase, use orchestra sync push to deploy\", \"judge_used\": \"glm:glm-4.5\", \"actor\": \"minimax:74\", \"retry_count\": 2}], \"_gate_judge_used\": \"glm:glm-4.5\", \"_gate_last_instructions\": \"Rebase the branch onto current main: git checkout orchestra/task/318b8bff-persona-build-karel-svoboda-karel-svobod && git rebase main\\nVerify the rebase resolves the deletion conflicts: git diff main should show only karel-svoboda additions, no persona deletions\\nAfter rebase, use orchestra sync push to deploy\"}"},{"id":"b9103d04-0c06-470b-ad06-fbb577ea7b08","title":"[Senate] Paper accumulation — Troy Torgerson (troy-torgerson)","description":"Accumulate published papers for Troy Torgerson into the SciDEX papers cache. Target: OpenAlex + PubMed + Semantic Scholar lookups keyed by the scientist's name; if available, prefer ORCID for deterministic author resolution.\n\nProfile URL hint: (builder resolves from alleninstitute.org or allenai.org)\nPer the quest_paper_accumulation_spec: target ≥90% of expected paper count, or explain why not.\nSpec: docs/planning/specs/quest_paper_accumulation_spec.md","status":"done","priority":99,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-24T15:36:57.755502+00:00","updated_at":"2026-04-24T15:36:57.755502+00:00","summary":"","completion_notes":"Auto-release: work already on origin/main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_paper_accumulation_spec.md","provider":"any","payload_json":"{}"},{"id":"1a6b8464-1b37-4a87-ba59-2b2bd244bf8b","title":"[Senate] Persona build — Sue Kaech (susan-kaech)","description":"Build the scientist persona for Sue Kaech using scidex/ingest/mimeo_native.py.\n\nCommand: python -m scidex.ingest.mimeo_native \"Sue Kaech\" --slug susan-kaech --allen-url \"https://alleninstitute.org/person/susan-kaech-2/\" --provider auto\n\nOutputs personas/susan-kaech/SKILL.md + avatar.jpg + avatar-attribution.json. Commit and push via orchestra sync. Do NOT call persona_registry.register — that's a separate admission step.\n\nAcceptance: SKILL.md validates under scidex.senate.personas.schemas.PersonaBundle (pydantic), avatar.jpg written or needs_curator_photo flagged, attribution.json present when photo fetched.\n\nSpec: docs/planning/specs/quest_personas_spec.md","status":"blocked","priority":99,"task_type":"iterative","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-24T14:48:49.930949+00:00","updated_at":"2026-04-24T15:17:55.287521+00:00","summary":"","completion_notes":"Inspect `git diff origin/main..HEAD`, rebase or merge origin/main into the task branch, and resolve only task-relevant conflicts before retrying.\n\nChanged files:\n- docs/planning/specs/quest_personas_spec.md\n- personas/susan-kaech/SKILL.md\n- personas/susan-kaech/avatar-attribution.json\n- personas/susan-kaech/avatar.jpg\n- scidex/ingest/mimeo_native.py\n\nDiff stat:\ndocs/planning/specs/quest_personas_spec.md   |  74 +++++++---------\n personas/susan-kaech/SKILL.md                |  58 ++++++++++++\n personas/susan-kaech/avatar-attribution.json |   8 ++\n personas/susan-kaech/avatar.jpg              | Bin 0 -> 159882 bytes\n scidex/ingest/mimeo_native.py                | 128 +++++++++++++++++++++++++--\n 5 files changed, 220 insertions(+), 48 deletions(-)","last_error":"validator LLM call crashed: RuntimeError(\"All LLM providers failed. Last error: CLI harness codex_cli returned exit 1: Error: No such file or directory (os error 2)\\n. Tried: ['minimax', 'glm', 'claude_cli', 'codex_cli']. Check API keys and provider availability.\")","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_personas_spec.md","provider":"any","payload_json":"{\"_gate_retry_count\": 1, \"_gate_last_decision\": \"REVISE\", \"_gate_last_reason\": \"Auto-deploy blocked: Merge failed (conflicts?):\", \"_gate_last_instructions\": \"Inspect `git diff origin/main..HEAD`, rebase or merge origin/main into the task branch, and resolve only task-relevant conflicts before retrying.\", \"_gate_branch\": \"orchestra/task/1a6b8464-persona-build-sue-kaech-susan-kaech\", \"_gate_changed_files\": [\"docs/planning/specs/quest_personas_spec.md\", \"personas/susan-kaech/SKILL.md\", \"personas/susan-kaech/avatar-attribution.json\", \"personas/susan-kaech/avatar.jpg\", \"scidex/ingest/mimeo_native.py\"], \"_gate_diff_stat\": \"docs/planning/specs/quest_personas_spec.md   |  74 +++++++---------\\n personas/susan-kaech/SKILL.md                |  58 ++++++++++++\\n personas/susan-kaech/avatar-attribution.json |   8 ++\\n personas/susan-kaech/avatar.jpg              | Bin 0 -> 159882 bytes\\n scidex/ingest/mimeo_native.py                | 128 +++++++++++++++++++++++++--\\n 5 files changed, 220 insertions(+), 48 deletions(-)\", \"_gate_history\": [{\"ts\": \"2026-04-24 15:09:29\", \"decision\": \"REVISE\", \"reason\": \"Auto-deploy blocked: Merge failed (conflicts?):\", \"instructions\": \"Inspect `git diff origin/main..HEAD`, rebase or merge origin/main into the task branch, and resolve only task-relevant conflicts before retrying.\", \"judge_used\": \"\", \"actor\": \"claude-auto:41\", \"retry_count\": 1}]}"},{"id":"59cc0f0e-a309-431a-9b02-e731484d8ddf","title":"[Senate] Persona build — Dan Weld (dan-weld)","description":"Build the scientist persona for Dan Weld using scidex/ingest/mimeo_native.py.\n\nCommand: python -m scidex.ingest.mimeo_native \"Dan Weld\" --slug dan-weld --provider auto\n\nOutputs personas/dan-weld/SKILL.md + avatar.jpg + avatar-attribution.json. Commit and push via orchestra sync. Do NOT call persona_registry.register — that's a separate admission step.\n\nAcceptance: SKILL.md validates under scidex.senate.personas.schemas.PersonaBundle (pydantic), avatar.jpg written or needs_curator_photo flagged, attribution.json present when photo fetched.\n\nSpec: docs/planning/specs/quest_personas_spec.md","status":"blocked","priority":99,"task_type":"iterative","frequency":"","assigned_slot":"","started_at":null,"completed_at":"","updated_at":"2026-04-24T15:15:10.176682+00:00","summary":"","completion_notes":null,"last_error":"validator LLM call crashed: RuntimeError(\"All LLM providers failed. Last error: CLI harness codex_cli returned exit 1: Error: No such file or directory (os error 2)\\n. Tried: ['minimax', 'glm', 'claude_cli', 'codex_cli']. Check API keys and provider availability.\")","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_personas_spec.md","provider":"any","payload_json":"{}"},{"id":"1f47cea6-0003-4c8c-9b0a-c086b772f361","title":"[Senate] Persona build — Shoaib Mufti (shoaib-mufti)","description":"Build the scientist persona for Shoaib Mufti using scidex/ingest/mimeo_native.py.\n\nCommand: python -m scidex.ingest.mimeo_native \"Shoaib Mufti\" --slug shoaib-mufti --provider auto\n\nOutputs personas/shoaib-mufti/SKILL.md + avatar.jpg + avatar-attribution.json. Commit and push via orchestra sync. Do NOT call persona_registry.register — that's a separate admission step.\n\nAcceptance: SKILL.md validates under scidex.senate.personas.schemas.PersonaBundle (pydantic), avatar.jpg written or needs_curator_photo flagged, attribution.json present when photo fetched.\n\nSpec: docs/planning/specs/quest_personas_spec.md","status":"blocked","priority":99,"task_type":"iterative","frequency":"","assigned_slot":"","started_at":null,"completed_at":"","updated_at":"2026-04-24T15:11:09.022215+00:00","summary":"","completion_notes":null,"last_error":"The completion criteria are empty, providing no basis to evaluate whether the Shoaib Mufti persona build has met any requirements","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_personas_spec.md","provider":"any","payload_json":"{}"},{"id":"b07034c2-5f3d-4495-9487-60564a8086fc","title":"[Senate] Persona build — Sud Pinglay (sud-pinglay)","description":"Build the scientist persona for Sud Pinglay using scidex/ingest/mimeo_native.py.\n\nCommand: python -m scidex.ingest.mimeo_native \"Sud Pinglay\" --slug sud-pinglay --provider auto\n\nOutputs personas/sud-pinglay/SKILL.md + avatar.jpg + avatar-attribution.json. Commit and push via orchestra sync. Do NOT call persona_registry.register — that's a separate admission step.\n\nAcceptance: SKILL.md validates under scidex.senate.personas.schemas.PersonaBundle (pydantic), avatar.jpg written or needs_curator_photo flagged, attribution.json present when photo fetched.\n\nSpec: docs/planning/specs/quest_personas_spec.md","status":"done","priority":99,"task_type":"iterative","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-24T15:10:16.404136+00:00","updated_at":"2026-04-24T15:10:16.404136+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_personas_spec.md","provider":"any","payload_json":"{}"},{"id":"5aa07844-06e3-4fe8-a654-134329e70a3c","title":"[Senate] Paper accumulation — Andy Hickl (andy-hickl)","description":"Accumulate published papers for Andy Hickl into the SciDEX papers cache. Target: OpenAlex + PubMed + Semantic Scholar lookups keyed by the scientist's name; if available, prefer ORCID for deterministic author resolution.\n\nProfile URL hint: https://alleninstitute.org/person/andrew-hickl/\nPer the quest_paper_accumulation_spec: target ≥90% of expected paper count, or explain why not.\nSpec: docs/planning/specs/quest_paper_accumulation_spec.md","status":"done","priority":99,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-24T14:58:02.209302+00:00","updated_at":"2026-04-24T14:58:02.209302+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_paper_accumulation_spec.md","provider":"any","payload_json":"{}"},{"id":"95c951ed-bfbf-4d9f-b08b-80be915052e6","title":"[Senate] Persona build — Troy Torgerson (troy-torgerson)","description":"Build the scientist persona for Troy Torgerson using scidex/ingest/mimeo_native.py.\n\nCommand: python -m scidex.ingest.mimeo_native \"Troy Torgerson\" --slug troy-torgerson --provider auto\n\nOutputs personas/troy-torgerson/SKILL.md + avatar.jpg + avatar-attribution.json. Commit and push via orchestra sync. Do NOT call persona_registry.register — that's a separate admission step.\n\nAcceptance: SKILL.md validates under scidex.senate.personas.schemas.PersonaBundle (pydantic), avatar.jpg written or needs_curator_photo flagged, attribution.json present when photo fetched.\n\nSpec: docs/planning/specs/quest_personas_spec.md","status":"done","priority":99,"task_type":"iterative","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-24T14:57:17.725030+00:00","updated_at":"2026-04-24T14:57:17.725030+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_personas_spec.md","provider":"any","payload_json":"{}"},{"id":"8b7007cf-6795-4058-a277-54d94b586d9b","title":"[Senate] Persona build — Ru Gunawardane (ru-gunawardane)","description":"Build the scientist persona for Ru Gunawardane using scidex/ingest/mimeo_native.py.\n\nCommand: python -m scidex.ingest.mimeo_native \"Ru Gunawardane\" --slug ru-gunawardane --allen-url \"https://alleninstitute.org/person/ruwanthi-ru-gunawardane/\" --provider auto\n\nOutputs personas/ru-gunawardane/SKILL.md + avatar.jpg + avatar-attribution.json. Commit and push via orchestra sync. Do NOT call persona_registry.register — that's a separate admission step.\n\nAcceptance: SKILL.md validates under scidex.senate.personas.schemas.PersonaBundle (pydantic), avatar.jpg written or needs_curator_photo flagged, attribution.json present when photo fetched.\n\nSpec: docs/planning/specs/quest_personas_spec.md","status":"blocked","priority":99,"task_type":"iterative","frequency":"","assigned_slot":"","started_at":null,"completed_at":"","updated_at":"2026-04-24T14:56:47.886406+00:00","summary":"","completion_notes":null,"last_error":"validator LLM call crashed: RuntimeError(\"All LLM providers failed. Last error: CLI harness codex_cli returned exit 1: Error: No such file or directory (os error 2)\\n. Tried: ['minimax', 'glm', 'claude_cli', 'codex_cli']. Check API keys and provider availability.\")","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_personas_spec.md","provider":"any","payload_json":"{}"},{"id":"634dd698-0df0-4d54-8818-8424bcbdf736","title":"[Senate] Persona build — Marion Pepper (marion-pepper)","description":"Build the scientist persona for Marion Pepper using scidex/ingest/mimeo_native.py.\n\nCommand: python -m scidex.ingest.mimeo_native \"Marion Pepper\" --slug marion-pepper --provider auto\n\nOutputs personas/marion-pepper/SKILL.md + avatar.jpg + avatar-attribution.json. Commit and push via orchestra sync. Do NOT call persona_registry.register — that's a separate admission step.\n\nAcceptance: SKILL.md validates under scidex.senate.personas.schemas.PersonaBundle (pydantic), avatar.jpg written or needs_curator_photo flagged, attribution.json present when photo fetched.\n\nSpec: docs/planning/specs/quest_personas_spec.md","status":"blocked","priority":99,"task_type":"iterative","frequency":"","assigned_slot":"","started_at":null,"completed_at":"","updated_at":"2026-04-24T14:56:33.371913+00:00","summary":"","completion_notes":null,"last_error":"validator LLM call crashed: RuntimeError(\"All LLM providers failed. Last error: CLI harness codex_cli returned exit 1: Error: No such file or directory (os error 2)\\n. Tried: ['minimax', 'glm', 'claude_cli', 'codex_cli']. Check API keys and provider availability.\")","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_personas_spec.md","provider":"any","payload_json":"{}"},{"id":"9e5759ff-1b92-4e6c-b64c-194a6c526373","title":"[Senate] Persona build — Xiaojun Li (xiaojun-li)","description":"Build the scientist persona for Xiaojun Li using scidex/ingest/mimeo_native.py.\n\nCommand: python -m scidex.ingest.mimeo_native \"Xiaojun Li\" --slug xiaojun-li --provider auto\n\nOutputs personas/xiaojun-li/SKILL.md + avatar.jpg + avatar-attribution.json. Commit and push via orchestra sync. Do NOT call persona_registry.register — that's a separate admission step.\n\nAcceptance: SKILL.md validates under scidex.senate.personas.schemas.PersonaBundle (pydantic), avatar.jpg written or needs_curator_photo flagged, attribution.json present when photo fetched.\n\nSpec: docs/planning/specs/quest_personas_spec.md","status":"blocked","priority":99,"task_type":"iterative","frequency":"","assigned_slot":"","started_at":null,"completed_at":"","updated_at":"2026-04-24T14:55:31.172987+00:00","summary":"","completion_notes":null,"last_error":"validator output was not parseable JSON","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_personas_spec.md","provider":"any","payload_json":"{}"},{"id":"bdba74f1-5f11-4b74-8745-cce357a9f234","title":"[Senate] Persona build — Andy Hickl (andy-hickl)","description":"Build the scientist persona for Andy Hickl using scidex/ingest/mimeo_native.py.\n\nCommand: python -m scidex.ingest.mimeo_native \"Andy Hickl\" --slug andy-hickl --allen-url \"https://alleninstitute.org/person/andrew-hickl/\" --provider auto\n\nOutputs personas/andy-hickl/SKILL.md + avatar.jpg + avatar-attribution.json. Commit and push via orchestra sync. Do NOT call persona_registry.register — that's a separate admission step.\n\nAcceptance: SKILL.md validates under scidex.senate.personas.schemas.PersonaBundle (pydantic), avatar.jpg written or needs_curator_photo flagged, attribution.json present when photo fetched.\n\nSpec: docs/planning/specs/quest_personas_spec.md","status":"done","priority":99,"task_type":"iterative","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-24T14:55:08.488673+00:00","updated_at":"2026-04-24T14:55:08.488673+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_personas_spec.md","provider":"any","payload_json":"{}"},{"id":"3881e859-9788-4862-a45f-938e099a5cc3","title":"[Senate] Persona build — Christof Koch (christof-koch)","description":"Build the scientist persona for Christof Koch using scidex/ingest/mimeo_native.py.\n\nCommand: python -m scidex.ingest.mimeo_native \"Christof Koch\" --slug christof-koch --provider auto\n\nOutputs personas/christof-koch/SKILL.md + avatar.jpg + avatar-attribution.json. Commit and push via orchestra sync. Do NOT call persona_registry.register — that's a separate admission step.\n\nAcceptance: SKILL.md validates under scidex.senate.personas.schemas.PersonaBundle (pydantic), avatar.jpg written or needs_curator_photo flagged, attribution.json present when photo fetched.\n\nSpec: docs/planning/specs/quest_personas_spec.md","status":"done","priority":99,"task_type":"iterative","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-24T14:54:10.153190+00:00","updated_at":"2026-04-24T14:54:10.153190+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_personas_spec.md","provider":"any","payload_json":"{}"},{"id":"9d3c56ec-744b-4287-809e-cb06a4a9c112","title":"[Senate] Persona build — Claire Gustavson (claire-gustavson)","description":"Build the scientist persona for Claire Gustavson using scidex/ingest/mimeo_native.py.\n\nCommand: python -m scidex.ingest.mimeo_native \"Claire Gustavson\" --slug claire-gustavson --provider auto\n\nOutputs personas/claire-gustavson/SKILL.md + avatar.jpg + avatar-attribution.json. Commit and push via orchestra sync. Do NOT call persona_registry.register — that's a separate admission step.\n\nAcceptance: SKILL.md validates under scidex.senate.personas.schemas.PersonaBundle (pydantic), avatar.jpg written or needs_curator_photo flagged, attribution.json present when photo fetched.\n\nSpec: docs/planning/specs/quest_personas_spec.md\n\n**Operator note (2026-04-24):** Claire Gustavson's research focus is **immunology and aging**. Use that to filter candidate publications when disambiguating: prefer papers tagged in immunology / aging / immunosenescence / inflammaging / age-related immune decline. Her work likely overlaps with Sue Kaech's (immunology) and the Allen Institute for Immunology's Human Immune Health Atlas program. Include 'immunology' OR 'aging' in OpenAlex/PubMed search refinement.","status":"blocked","priority":99,"task_type":"iterative","frequency":"","assigned_slot":"","started_at":null,"completed_at":"","updated_at":"2026-04-24T14:53:49.099860+00:00","summary":"","completion_notes":null,"last_error":"validator LLM call crashed: RuntimeError(\"All LLM providers failed. Last error: CLI harness codex_cli returned exit 1: Error: No such file or directory (os error 2)\\n. Tried: ['minimax', 'glm', 'claude_cli', 'codex_cli']. Check API keys and provider availability.\")","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_personas_spec.md","provider":"any","payload_json":"{}"},{"id":"255dff6b-779f-4cc1-8710-1de21d0e8355","title":"[Senate] Paper accumulation — Pete Skene (pete-skene)","description":"Accumulate published papers for Pete Skene into the SciDEX papers cache. Target: OpenAlex + PubMed + Semantic Scholar lookups keyed by the scientist's name; if available, prefer ORCID for deterministic author resolution.\n\nProfile URL hint: (builder resolves from alleninstitute.org or allenai.org)\nPer the quest_paper_accumulation_spec: target ≥90% of expected paper count, or explain why not.\nSpec: docs/planning/specs/quest_paper_accumulation_spec.md","status":"done","priority":99,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-24T14:53:37.838881+00:00","updated_at":"2026-04-24T14:53:37.838881+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_paper_accumulation_spec.md","provider":"any","payload_json":"{}"},{"id":"4c597f41-7fe2-45aa-aa4a-f6e9f43da06b","title":"[Senate] Persona build — Rui Costa (rui-costa)","description":"Build the scientist persona for Rui Costa using scidex/ingest/mimeo_native.py.\n\nCommand: python -m scidex.ingest.mimeo_native \"Rui Costa\" --slug rui-costa --allen-url \"https://alleninstitute.org/person/rui-costa/\" --provider auto\n\nOutputs personas/rui-costa/SKILL.md + avatar.jpg + avatar-attribution.json. Commit and push via orchestra sync. Do NOT call persona_registry.register — that's a separate admission step.\n\nAcceptance: SKILL.md validates under scidex.senate.personas.schemas.PersonaBundle (pydantic), avatar.jpg written or needs_curator_photo flagged, attribution.json present when photo fetched.\n\nSpec: docs/planning/specs/quest_personas_spec.md","status":"blocked","priority":99,"task_type":"iterative","frequency":"","assigned_slot":"","started_at":null,"completed_at":"","updated_at":"2026-04-24T14:51:30.592103+00:00","summary":"","completion_notes":"Restore the Andy Hickl persona files (SKILL.md, avatar-attribution.json, avatar.jpg) exactly as they were on main, or obtain a spec amendment authorizing Andy Hickl's removal before this merge\nIf Andy Hickl is being replaced rather than deleted, ensure the new persona (e.g., rui-costa) is fully built and the transition is justified in the spec\n\nChanged files:\n- .orchestra-slot.json\n- docs/planning/specs/51232c36_diagnostic_health_check_watchdog_13_abandons_spec.md\n- docs/planning/specs/e4ed2939-05f3-4638-b6a3-89095974aa61_debate_engine_cycle_spec.md\n- docs/planning/specs/e95cbcab_verify_health_check_post_fix_spec.md\n- docs/planning/specs/quest_personas_spec.md\n- personas/andy-hickl/SKILL.md\n- personas/andy-hickl/avatar-attribution.json\n- personas/andy-hickl/avatar.jpg\n- personas/jesse-gray/SKILL.md\n- personas/jesse-gray/avatar-attribution.json\n- personas/jesse-gray/avatar.jpg\n- personas/rui-costa/SKILL.md\n- personas/rui-costa/avatar-attribution.json\n- personas/rui-costa/avatar.jpg\n- scidex/ingest/mimeo_native.py\n\nDiff stat:\n.orchestra-slot.json                               |   7 +--\n ...ostic_health_check_watchdog_13_abandons_spec.md |  36 ++++++++++-\n ...8-b6a3-89095974aa61_debate_engine_cycle_spec.md |  45 --------------\n .../e95cbcab_verify_health_check_post_fix_spec.md  |  49 ++++++++-------\n docs/planning/specs/quest_personas_spec.md         |  24 +++-----\n personas/andy-hickl/SKILL.md                       |  68 ---------------------\n personas/andy-hickl/avatar-attribution.json        |   8 ---\n personas/andy-hickl/avatar.jpg                     | Bin 478824 -> 0 bytes\n personas/jesse-gray/SKILL.md                       |  42 +++++++++----\n personas/jesse-gray/avatar-attribution.json        |   6 +-\n personas/jesse-gray/avatar.jpg                     | Bin 478824 -> 40700 bytes\n personas/rui-costa/SKILL.md                        |  33 ++++------\n personas/rui-costa/avatar-attribution.json         |   6 +-\n personas/rui-costa/avatar.jpg                      | Bin 40700 -> 478824 bytes\n scidex/ingest/mimeo_native.py                      |   2 +-\n 15 files changed, 117 insertions(+), 209 deletions(-)","last_error":"validator LLM call crashed: RuntimeError(\"All LLM providers failed. Last error: CLI harness codex_cli returned exit 1: Error: No such file or directory (os error 2)\\n. Tried: ['minimax', 'glm', 'claude_cli', 'codex_cli']. Check API keys and provider availability.\")","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_personas_spec.md","provider":"any","payload_json":"{\"_gate_retry_count\": 1, \"_gate_last_decision\": \"REVISE\", \"_gate_last_reason\": \"The diff deletes Andy Hickl's persona files (SKILL.md, avatar-attribution.json, avatar.jpg zeroed) without any spec or task authorization \\u2014 this is a destructive scope creep that would break the Agora debate engine, which depends on all nine founding personas being present.\", \"_gate_judge_used\": \"minimax:MiniMax-M2.7\", \"_gate_last_instructions\": \"Restore the Andy Hickl persona files (SKILL.md, avatar-attribution.json, avatar.jpg) exactly as they were on main, or obtain a spec amendment authorizing Andy Hickl's removal before this merge\\nIf Andy Hickl is being replaced rather than deleted, ensure the new persona (e.g., rui-costa) is fully built and the transition is justified in the spec\", \"_gate_branch\": \"orchestra/task/4c597f41-persona-build-rui-costa-rui-costa\", \"_gate_changed_files\": [\".orchestra-slot.json\", \"docs/planning/specs/51232c36_diagnostic_health_check_watchdog_13_abandons_spec.md\", \"docs/planning/specs/e4ed2939-05f3-4638-b6a3-89095974aa61_debate_engine_cycle_spec.md\", \"docs/planning/specs/e95cbcab_verify_health_check_post_fix_spec.md\", \"docs/planning/specs/quest_personas_spec.md\", \"personas/andy-hickl/SKILL.md\", \"personas/andy-hickl/avatar-attribution.json\", \"personas/andy-hickl/avatar.jpg\", \"personas/jesse-gray/SKILL.md\", \"personas/jesse-gray/avatar-attribution.json\", \"personas/jesse-gray/avatar.jpg\", \"personas/rui-costa/SKILL.md\", \"personas/rui-costa/avatar-attribution.json\", \"personas/rui-costa/avatar.jpg\", \"scidex/ingest/mimeo_native.py\"], \"_gate_diff_stat\": \".orchestra-slot.json                               |   7 +--\\n ...ostic_health_check_watchdog_13_abandons_spec.md |  36 ++++++++++-\\n ...8-b6a3-89095974aa61_debate_engine_cycle_spec.md |  45 --------------\\n .../e95cbcab_verify_health_check_post_fix_spec.md  |  49 ++++++++-------\\n docs/planning/specs/quest_personas_spec.md         |  24 +++-----\\n personas/andy-hickl/SKILL.md                       |  68 ---------------------\\n personas/andy-hickl/avatar-attribution.json        |   8 ---\\n personas/andy-hickl/avatar.jpg                     | Bin 478824 -> 0 bytes\\n personas/jesse-gray/SKILL.md                       |  42 +++++++++----\\n personas/jesse-gray/avatar-attribution.json        |   6 +-\\n personas/jesse-gray/avatar.jpg                     | Bin 478824 -> 40700 bytes\\n personas/rui-costa/SKILL.md                        |  33 ++++------\\n personas/rui-costa/avatar-attribution.json         |   6 +-\\n personas/rui-costa/avatar.jpg                      | Bin 40700 -> 478824 bytes\\n scidex/ingest/mimeo_native.py                      |   2 +-\\n 15 files changed, 117 insertions(+), 209 deletions(-)\", \"_gate_history\": [{\"ts\": \"2026-04-24 14:31:44\", \"decision\": \"REVISE\", \"reason\": \"The diff deletes Andy Hickl's persona files (SKILL.md, avatar-attribution.json, avatar.jpg zeroed) without any spec or task authorization \\u2014 this is a destructive scope creep that would break the Agora debate engine, which depends on all nine founding personas being present.\", \"instructions\": \"Restore the Andy Hickl persona files (SKILL.md, avatar-attribution.json, avatar.jpg) exactly as they were on main, or obtain a spec amendment authorizing Andy Hickl's removal before this merge\\nIf Andy Hickl is being replaced rather than deleted, ensure the new persona (e.g., rui-costa) is fully built and the transition is justified in the spec\", \"judge_used\": \"minimax:MiniMax-M2.7\", \"actor\": \"minimax:76\", \"retry_count\": 1}]}"},{"id":"a345a151-53f3-4deb-b510-930135e3f235","title":"[Senate] Persona build — Pete Skene (pete-skene)","description":"Build the scientist persona for Pete Skene using scidex/ingest/mimeo_native.py.\n\nCommand: python -m scidex.ingest.mimeo_native \"Pete Skene\" --slug pete-skene --provider auto\n\nOutputs personas/pete-skene/SKILL.md + avatar.jpg + avatar-attribution.json. Commit and push via orchestra sync. Do NOT call persona_registry.register — that's a separate admission step.\n\nAcceptance: SKILL.md validates under scidex.senate.personas.schemas.PersonaBundle (pydantic), avatar.jpg written or needs_curator_photo flagged, attribution.json present when photo fetched.\n\nSpec: docs/planning/specs/quest_personas_spec.md","status":"blocked","priority":99,"task_type":"iterative","frequency":"","assigned_slot":"","started_at":null,"completed_at":"","updated_at":"2026-04-24T14:51:23.712163+00:00","summary":"","completion_notes":null,"last_error":"validator LLM call crashed: RuntimeError(\"All LLM providers failed. Last error: CLI harness codex_cli returned exit 1: Error: No such file or directory (os error 2)\\n. Tried: ['minimax', 'glm', 'claude_cli', 'codex_cli']. Check API keys and provider availability.\")","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_personas_spec.md","provider":"any","payload_json":"{}"},{"id":"24a1b067-e414-43cf-a64a-593dd2fb8480","title":"[Senate] Paper accumulation — Claire Gustavson (claire-gustavson)","description":"Accumulate published papers for Claire Gustavson into the SciDEX papers cache. Target: OpenAlex + PubMed + Semantic Scholar lookups keyed by the scientist's name; if available, prefer ORCID for deterministic author resolution.\n\nProfile URL hint: (builder resolves from alleninstitute.org or allenai.org)\nPer the quest_paper_accumulation_spec: target ≥90% of expected paper count, or explain why not.\nSpec: docs/planning/specs/quest_paper_accumulation_spec.md\n\n---\n**2026-04-24 retry:** Operator confirms Claire Gustavson IS at Allen Institute. Previous run reported 'no resolvable ORCID/OpenAlex/Allen profile'. Do MORE aggressive resolution:\n1. WebFetch https://alleninstitute.org/person/claire-gustavson/ — if 200, extract bio + photo.\n2. WebFetch https://alleninstitute.org/team/ and search for 'Gustavson'.\n3. WebSearch 'Claire Gustavson Allen Institute' — check first 5 results, pick any alleninstitute.org URL.\n4. If the profile is under a different slug (e.g. 'claire-d-gustavson' or 'c-gustavson'),    pass --slug claire-gustavson --allen-url <URL> to mimeo_native.\n5. For papers: search OpenAlex by name + 'Allen Institute' affiliation filter, not just name.\n6. PubMed search: 'Gustavson C[Author] AND Allen Institute[Affiliation]' — pull anything.\n7. If still 0 resolvable papers, set `needs_curator=true` in the persona frontmatter and produce    a thin persona seeded from her Allen role alone. Do NOT fail the task — produce a minimum-viable persona.\n\n**Operator note (2026-04-24):** Claire Gustavson's research focus is **immunology and aging**. Use that to filter candidate publications when disambiguating: prefer papers tagged in immunology / aging / immunosenescence / inflammaging / age-related immune decline. Her work likely overlaps with Sue Kaech's (immunology) and the Allen Institute for Immunology's Human Immune Health Atlas program. Include 'immunology' OR 'aging' in OpenAlex/PubMed search refinement.","status":"done","priority":99,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-24T14:45:22.383509+00:00","updated_at":"2026-04-24T14:45:22.383509+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_paper_accumulation_spec.md","provider":"any","payload_json":"{}"},{"id":"daa8d573-1417-484d-9e2a-8f5504c4c28a","title":"[Senate] Paper accumulation — Ed Lein (ed-lein)","description":"Accumulate published papers for Ed Lein into the SciDEX papers cache. Target: OpenAlex + PubMed + Semantic Scholar lookups keyed by the scientist's name; if available, prefer ORCID for deterministic author resolution.\n\nProfile URL hint: https://alleninstitute.org/person/ed-lein/\nPer the quest_paper_accumulation_spec: target ≥90% of expected paper count, or explain why not.\nSpec: docs/planning/specs/quest_paper_accumulation_spec.md","status":"done","priority":99,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-24T14:44:56.227487+00:00","updated_at":"2026-04-24T14:44:56.227487+00:00","summary":"","completion_notes":"Auto-release: work already on origin/main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_paper_accumulation_spec.md","provider":"any","payload_json":"{}"},{"id":"2b8bb2ed-7227-49b0-a824-af3e28fccac3","title":"[Senate] Paper accumulation — Sue Kaech (susan-kaech)","description":"Accumulate published papers for Sue Kaech into the SciDEX papers cache. Target: OpenAlex + PubMed + Semantic Scholar lookups keyed by the scientist's name; if available, prefer ORCID for deterministic author resolution.\n\nProfile URL hint: https://alleninstitute.org/person/susan-kaech-2/\nPer the quest_paper_accumulation_spec: target ≥90% of expected paper count, or explain why not.\nSpec: docs/planning/specs/quest_paper_accumulation_spec.md","status":"done","priority":99,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-24T14:44:28.852050+00:00","updated_at":"2026-04-24T14:44:28.852050+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_paper_accumulation_spec.md","provider":"any","payload_json":"{}"},{"id":"7bb8a1f8-a513-4012-a495-16094ca3453f","title":"[Senate] Paper accumulation — Shoaib Mufti (shoaib-mufti)","description":"Accumulate published papers for Shoaib Mufti into the SciDEX papers cache. Target: OpenAlex + PubMed + Semantic Scholar lookups keyed by the scientist's name; if available, prefer ORCID for deterministic author resolution.\n\nProfile URL hint: (builder resolves from alleninstitute.org or allenai.org)\nPer the quest_paper_accumulation_spec: target ≥90% of expected paper count, or explain why not.\nSpec: docs/planning/specs/quest_paper_accumulation_spec.md","status":"done","priority":99,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-24T14:31:34.025834+00:00","updated_at":"2026-04-24T14:31:34.025834+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_paper_accumulation_spec.md","provider":"any","payload_json":"{\"completion_shas\": [\"5fa530972cf65cea808e8288230efff3e60977e2\"], \"completion_shas_checked_at\": \"\"}"},{"id":"28dde84d-b8be-4ff7-9190-3ef0b36ac6ec","title":"[Senate] Persona build — Jesse Gray (jesse-gray)","description":"Build the scientist persona for Jesse Gray using scidex/ingest/mimeo_native.py.\n\nCommand: python -m scidex.ingest.mimeo_native \"Jesse Gray\" --slug jesse-gray --allen-url \"https://alleninstitute.org/person/jesse-gray/\" --provider auto\n\nOutputs personas/jesse-gray/SKILL.md + avatar.jpg + avatar-attribution.json. Commit and push via orchestra sync. Do NOT call persona_registry.register — that's a separate admission step.\n\nAcceptance: SKILL.md validates under scidex.senate.personas.schemas.PersonaBundle (pydantic), avatar.jpg written or needs_curator_photo flagged, attribution.json present when photo fetched.\n\nSpec: docs/planning/specs/quest_personas_spec.md","status":"blocked","priority":99,"task_type":"iterative","frequency":"","assigned_slot":"","started_at":null,"completed_at":"","updated_at":"2026-04-24T14:26:38.121883+00:00","summary":"","completion_notes":null,"last_error":"validator LLM call crashed: RuntimeError(\"All LLM providers failed. Last error: CLI harness codex_cli returned exit 1: Error: No such file or directory (os error 2)\\n. Tried: ['minimax', 'glm', 'claude_cli', 'codex_cli']. Check API keys and provider availability.\")","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_personas_spec.md","provider":"any","payload_json":"{}"},{"id":"8b7ffa01-5935-4860-b281-e553e970ffad","title":"[Senate] Paper accumulation — Peter Clark (peter-clark)","description":"Accumulate published papers for Peter Clark into the SciDEX papers cache. Target: OpenAlex + PubMed + Semantic Scholar lookups keyed by the scientist's name; if available, prefer ORCID for deterministic author resolution.\n\nProfile URL hint: (builder resolves from alleninstitute.org or allenai.org)\nPer the quest_paper_accumulation_spec: target ≥90% of expected paper count, or explain why not.\nSpec: docs/planning/specs/quest_paper_accumulation_spec.md","status":"done","priority":99,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-24T14:22:49.841929+00:00","updated_at":"2026-04-24T14:22:49.841929+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_paper_accumulation_spec.md","provider":"any","payload_json":"{}"},{"id":"710229fe-c4d9-4f77-81fc-95d2eacf2acd","title":"[Senate] Paper accumulation — Jay Shendure (jay-shendure)","description":"Accumulate published papers for Jay Shendure into the SciDEX papers cache. Target: OpenAlex + PubMed + Semantic Scholar lookups keyed by the scientist's name; if available, prefer ORCID for deterministic author resolution.\n\nProfile URL hint: https://alleninstitute.org/person/jay-shendure/\nPer the quest_paper_accumulation_spec: target ≥90% of expected paper count, or explain why not.\nSpec: docs/planning/specs/quest_paper_accumulation_spec.md","status":"done","priority":99,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-24T14:15:23.555332+00:00","updated_at":"2026-04-24T14:15:23.555332+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_paper_accumulation_spec.md","provider":"any","payload_json":"{}"},{"id":"afe1b5dc-a348-497f-8eb3-72e1822c667e","title":"[Senate] Paper accumulation — Christof Koch (christof-koch)","description":"Accumulate published papers for Christof Koch into the SciDEX papers cache. Target: OpenAlex + PubMed + Semantic Scholar lookups keyed by the scientist's name; if available, prefer ORCID for deterministic author resolution.\n\nProfile URL hint: (builder resolves from alleninstitute.org or allenai.org)\nPer the quest_paper_accumulation_spec: target ≥90% of expected paper count, or explain why not.\nSpec: docs/planning/specs/quest_paper_accumulation_spec.md","status":"done","priority":99,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-24T14:15:09.410501+00:00","updated_at":"2026-04-24T14:15:09.410501+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_paper_accumulation_spec.md","provider":"any","payload_json":"{}"},{"id":"d40b75de-d60d-485b-9abf-1fb83afeea00","title":"[Senate] Persona build — Hongkui Zeng (hongkui-zeng)","description":"Build the scientist persona for Hongkui Zeng using scidex/ingest/mimeo_native.py.\n\nCommand: python -m scidex.ingest.mimeo_native \"Hongkui Zeng\" --slug hongkui-zeng --allen-url \"https://alleninstitute.org/person/hongkui-zeng/\" --provider auto\n\nOutputs personas/hongkui-zeng/SKILL.md + avatar.jpg + avatar-attribution.json. Commit and push via orchestra sync. Do NOT call persona_registry.register — that's a separate admission step.\n\nAcceptance: SKILL.md validates under scidex.senate.personas.schemas.PersonaBundle (pydantic), avatar.jpg written or needs_curator_photo flagged, attribution.json present when photo fetched.\n\nSpec: docs/planning/specs/quest_personas_spec.md","status":"blocked","priority":99,"task_type":"iterative","frequency":"","assigned_slot":"","started_at":null,"completed_at":"","updated_at":"2026-04-24T14:12:21.338189+00:00","summary":"","completion_notes":null,"last_error":"validator LLM call crashed: RuntimeError(\"All LLM providers failed. Last error: CLI harness codex_cli returned exit 1: Error: No such file or directory (os error 2)\\n. Tried: ['minimax', 'glm', 'claude_cli', 'codex_cli']. Check API keys and provider availability.\")","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_personas_spec.md","provider":"any","payload_json":"{}"},{"id":"8de1f09d-2bd3-44e4-9b84-86fa4d16c011","title":"[Senate] Paper accumulation — Dan Weld (dan-weld)","description":"Accumulate published papers for Dan Weld into the SciDEX papers cache. Target: OpenAlex + PubMed + Semantic Scholar lookups keyed by the scientist's name; if available, prefer ORCID for deterministic author resolution.\n\nProfile URL hint: (builder resolves from alleninstitute.org or allenai.org)\nPer the quest_paper_accumulation_spec: target ≥90% of expected paper count, or explain why not.\nSpec: docs/planning/specs/quest_paper_accumulation_spec.md","status":"done","priority":99,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-24T14:11:57.899867+00:00","updated_at":"2026-04-24T14:11:57.899867+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_paper_accumulation_spec.md","provider":"any","payload_json":"{}"},{"id":"b823c9f6-6450-4892-8c81-f01aa2586148","title":"[Senate] Paper accumulation — Jesse Gray (jesse-gray)","description":"Accumulate published papers for Jesse Gray into the SciDEX papers cache. Target: OpenAlex + PubMed + Semantic Scholar lookups keyed by the scientist's name; if available, prefer ORCID for deterministic author resolution.\n\nProfile URL hint: https://alleninstitute.org/person/jesse-gray/\nPer the quest_paper_accumulation_spec: target ≥90% of expected paper count, or explain why not.\nSpec: docs/planning/specs/quest_paper_accumulation_spec.md","status":"done","priority":99,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-24T14:10:13.446505+00:00","updated_at":"2026-04-24T14:10:13.446505+00:00","summary":"","completion_notes":"Auto-release: non-recurring task produced no commits this iteration; requeuing for next cycle","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_paper_accumulation_spec.md","provider":"any","payload_json":"{}"},{"id":"eb154499-7f52-4224-8ad9-dd9bc939fdc9","title":"[Senate] Persona build — Ed Lein (ed-lein)","description":"Build the scientist persona for Ed Lein using scidex/ingest/mimeo_native.py.\n\nCommand: python -m scidex.ingest.mimeo_native \"Ed Lein\" --slug ed-lein --allen-url \"https://alleninstitute.org/person/ed-lein/\" --provider auto\n\nOutputs personas/ed-lein/SKILL.md + avatar.jpg + avatar-attribution.json. Commit and push via orchestra sync. Do NOT call persona_registry.register — that's a separate admission step.\n\nAcceptance: SKILL.md validates under scidex.senate.personas.schemas.PersonaBundle (pydantic), avatar.jpg written or needs_curator_photo flagged, attribution.json present when photo fetched.\n\nSpec: docs/planning/specs/quest_personas_spec.md","status":"blocked","priority":99,"task_type":"iterative","frequency":"","assigned_slot":"","started_at":null,"completed_at":"","updated_at":"2026-04-24T14:09:41.111159+00:00","summary":"","completion_notes":null,"last_error":"validator LLM call crashed: RuntimeError(\"All LLM providers failed. Last error: CLI harness codex_cli returned exit 1: Error: No such file or directory (os error 2)\\n. Tried: ['minimax', 'glm', 'claude_cli', 'codex_cli']. Check API keys and provider availability.\")","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_personas_spec.md","provider":"any","payload_json":"{}"},{"id":"fe846af8-83a3-44d3-8180-f085f45155d4","title":"[Senate] Paper accumulation — Sud Pinglay (sud-pinglay)","description":"Accumulate published papers for Sud Pinglay into the SciDEX papers cache. Target: OpenAlex + PubMed + Semantic Scholar lookups keyed by the scientist's name; if available, prefer ORCID for deterministic author resolution.\n\nProfile URL hint: (builder resolves from alleninstitute.org or allenai.org)\nPer the quest_paper_accumulation_spec: target ≥90% of expected paper count, or explain why not.\nSpec: docs/planning/specs/quest_paper_accumulation_spec.md","status":"done","priority":99,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-24T14:09:31.997368+00:00","updated_at":"2026-04-24T14:09:31.997368+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_paper_accumulation_spec.md","provider":"any","payload_json":"{}"},{"id":"94ddc90d-e3b8-42b6-a700-3f5787d38351","title":"[Senate] Paper accumulation — Xiaojun Li (xiaojun-li)","description":"Accumulate published papers for Xiaojun Li into the SciDEX papers cache. Target: OpenAlex + PubMed + Semantic Scholar lookups keyed by the scientist's name; if available, prefer ORCID for deterministic author resolution.\n\nProfile URL hint: (builder resolves from alleninstitute.org or allenai.org)\nPer the quest_paper_accumulation_spec: target ≥90% of expected paper count, or explain why not.\nSpec: docs/planning/specs/quest_paper_accumulation_spec.md","status":"done","priority":99,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-24T14:04:15.022288+00:00","updated_at":"2026-04-24T14:04:15.022288+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_paper_accumulation_spec.md","provider":"any","payload_json":"{}"},{"id":"b52e0339-28e8-4143-bc53-cb51fb8ef23b","title":"[Senate] Paper accumulation — Ru Gunawardane (ru-gunawardane)","description":"Accumulate published papers for Ru Gunawardane into the SciDEX papers cache. Target: OpenAlex + PubMed + Semantic Scholar lookups keyed by the scientist's name; if available, prefer ORCID for deterministic author resolution.\n\nProfile URL hint: https://alleninstitute.org/person/ruwanthi-ru-gunawardane/\nPer the quest_paper_accumulation_spec: target ≥90% of expected paper count, or explain why not.\nSpec: docs/planning/specs/quest_paper_accumulation_spec.md","status":"done","priority":99,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-24T14:04:08.948474+00:00","updated_at":"2026-04-24T14:04:08.948474+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_paper_accumulation_spec.md","provider":"any","payload_json":"{}"},{"id":"7e11dc45-506d-4a7e-b411-21908256eb2c","title":"[Senate] Paper accumulation — Rui Costa (rui-costa)","description":"Accumulate published papers for Rui Costa into the SciDEX papers cache. Target: OpenAlex + PubMed + Semantic Scholar lookups keyed by the scientist's name; if available, prefer ORCID for deterministic author resolution.\n\nProfile URL hint: https://alleninstitute.org/person/rui-costa/\nPer the quest_paper_accumulation_spec: target ≥90% of expected paper count, or explain why not.\nSpec: docs/planning/specs/quest_paper_accumulation_spec.md","status":"done","priority":99,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-24T14:02:34.537705+00:00","updated_at":"2026-04-24T14:02:34.537705+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_paper_accumulation_spec.md","provider":"any","payload_json":"{}"},{"id":"7385c6d0-50f0-4f67-b64f-148db1b5a719","title":"[Senate] Paper accumulation — Hongkui Zeng (hongkui-zeng)","description":"Accumulate published papers for Hongkui Zeng into the SciDEX papers cache. Target: OpenAlex + PubMed + Semantic Scholar lookups keyed by the scientist's name; if available, prefer ORCID for deterministic author resolution.\n\nProfile URL hint: https://alleninstitute.org/person/hongkui-zeng/\nPer the quest_paper_accumulation_spec: target ≥90% of expected paper count, or explain why not.\nSpec: docs/planning/specs/quest_paper_accumulation_spec.md","status":"done","priority":99,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-24T13:59:51.868450+00:00","updated_at":"2026-04-24T13:59:51.868450+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_paper_accumulation_spec.md","provider":"any","payload_json":"{}"},{"id":"c08af55d-6811-44f7-ae09-e5547f9de7d3","title":"[Senate] Paper accumulation — Karel Svoboda (karel-svoboda)","description":"Accumulate published papers for Karel Svoboda into the SciDEX papers cache. Target: OpenAlex + PubMed + Semantic Scholar lookups keyed by the scientist's name; if available, prefer ORCID for deterministic author resolution.\n\nProfile URL hint: https://alleninstitute.org/person/karel-svoboda-2/\nPer the quest_paper_accumulation_spec: target ≥90% of expected paper count, or explain why not.\nSpec: docs/planning/specs/quest_paper_accumulation_spec.md","status":"done","priority":99,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-24T13:56:39.082827+00:00","updated_at":"2026-04-24T13:56:39.082827+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_paper_accumulation_spec.md","provider":"any","payload_json":"{}"},{"id":"513a0d51-b3ff-46a6-b82a-bb5589b72618","title":"[Senate] Investigate slot starvation in task distribution","description":"Slot 9 agent cannot acquire tasks because: Phase 1 has no slot_affinity=9 tasks, Phase 2 offset calculation is 9 % 10 = 9 which skips all 8 unaffinitized tasks. Need to either assign tasks to slot 9 or fix the offset formula for high slot numbers.\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":99,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-14T20:04:42.418194+00:00","updated_at":"2026-04-14T20:04:42.418194+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/513a0d51_b3f_spec.md","provider":"any","payload_json":"{\"requirements\": {\"coding\": 5}, \"completion_shas\": [\"e67f0316322344671fb438bf8cfc8830efce496a\", \"70ecb854ddcfa168d1804cdfbc14198065aa074b\", \"162f244bb6e5b11c923e3ccc8bd93bdb8790be95\"], \"completion_shas_checked_at\": \"2026-04-14T20:04:42.402906+00:00\"}"},{"id":"aa1c8ad8-f157-4e03-941d-9fdb76dbb12a","title":"[Senate] CI: Database integrity check and backup verification","description":"Run PRAGMA integrity_check on scidex.db. Verify latest backup exists and is recent. Report any issues.","status":"blocked","priority":98,"task_type":"recurring","frequency":"daily","assigned_slot":"","started_at":null,"completed_at":"2026-04-23T03:37:09.827906+00:00","updated_at":"2026-04-24T13:13:26.374350+00:00","summary":"","completion_notes":"Auto-release: recurring task had no work this cycle","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/aa1c8ad8_f157_senate_ci_database_integrity_check_spec.md","provider":"any","payload_json":"{\"requirements\": {\"coding\": 8, \"safety\": 9}, \"auto_tagged_at\": \"2026-04-03T22:29:52.513479\", \"_stall_skip_providers\": [], \"_stall_requeued_by\": \"codex\", \"_stall_requeued_at\": \"2026-04-11 02:56:22\", \"completion_shas\": [\"efb555027dd67039da7e68560fbd94a174575d94\"], \"completion_shas_checked_at\": \"2026-04-21T03:35:16.849197+00:00\", \"completion_shas_missing\": [\"d2f01b42691945712eb3f88293c47997015d6beb\", \"c53cc9020bcd51092e362aa8dc76f38462cd5717\", \"7a267152f834f9721284ccfe516c1c7baf63eeb1\", \"23038e413951082d6db7a07bb22f8ee378871f55\", \"10c1f8d0c9cbeba2252c88512a73c8510f356999\", \"202fd7e104d4fd4074ca72cbef5ecdf9e9419c0e\", \"757a62d9ae58154766f6f1147fb7d947c5f79ee8\", \"0123d1d296f748917b51f41636d78a1d550de13c\", \"bffb9c0aeb28ee8dfb4a8e32c4c61bca66b7c06e\", \"41492c821f7dbb7d1edb4f20f12005400bd185be\"], \"_stall_skip_at\": {}, \"_stall_skip_pruned_at\": \"2026-04-14T10:37:14.022390+00:00\"}"},{"id":"c5356c85-6d51-4fd8-8329-b84cdd180fd3","title":"[Senate] Implement automated hourly DB backups with rotation","description":"CRITICAL: Prevent future data loss by implementing robust backups:\n1. Create backup script that runs hourly via cron:\n   - sqlite3 scidex.db \".backup /data/backups/sqlite/scidex-$(date +%%Y%%m%%dT%%H%%M%%S).db\"\n   - sqlite3 /home/ubuntu/Orchestra/orchestra.db \".backup /data/backups/sqlite/orchestra-$(date +%%Y%%m%%dT%%H%%M%%S).db\"\n   - Compress with gzip\n   - Keep last 48 hourly + 30 daily backups, prune older\n2. Before any migration/merge touching scidex.db, auto-backup first\n3. Log backup events to a backup_log table\n4. Monitor backup freshness — alert if last backup >2 hours old\n5. Restore script that can restore from any backup timestamp\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":98,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-13T21:30:34.476420+00:00","updated_at":"2026-04-13T21:30:34.476420+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{\"_stall_skip_providers\": [], \"_stall_requeued_by\": \"codex\", \"_stall_requeued_at\": \"2026-04-13 19:16:45\", \"completion_shas\": [\"f7745b750515d68857ac888aa4b598aa4f687611\", \"655f69958cc7e2375f40718f1687ccad3f5c5615\"], \"completion_shas_checked_at\": \"2026-04-13T21:30:34.458994+00:00\", \"_stall_skip_at\": {}, \"_stall_skip_pruned_at\": \"2026-04-14T10:37:14.022390+00:00\"}"},{"id":"ee6feda2-ae51-448a-9222-0fd7738d4fb0","title":"[Senate] Secure or remove bridge.py /exec arbitrary command execution endpoint","description":"Critical: bridge.py:24-30 (C-3) allows arbitrary shell command execution via /exec endpoint. This is effectively a web shell. CVSS 10.0. Options: (1) Remove endpoint entirely, (2) Implement strict command allowlist, (3) Replace shell=True with list-based subprocess. Add audit logging. See security_audit_2026-04-02.md.\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":98,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-13T19:16:57.553849+00:00","updated_at":"2026-04-13T19:16:57.553849+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/ee6feda2_ae5_spec.md","provider":"claude","payload_json":"{\"requirements\": {\"coding\": 8, \"safety\": 8}, \"completion_shas\": [\"221468761fc6d914262242c5c61e8fd3e6cf2fb6\"], \"completion_shas_checked_at\": \"2026-04-13T19:16:57.536431+00:00\"}"},{"id":"983b208d-3dec-4d43-9aa7-66a1a33f14f6","title":"[Senate] Add DB write protection — prevent git merges from overwriting scidex.db","description":"Root cause fix for DB corruption:\n1. Ensure scidex.db NEVER enters git tracking again:\n   - Add to .git/info/exclude as backup to .gitignore\n   - Pre-merge hook that checks for scidex.db in incoming changes and skips it\n   - Post-merge hook that verifies DB integrity after every merge\n2. Add file immutability flag during git operations (chattr +i scidex.db during merge)\n3. Verify scidex.db is not tracked: git ls-files scidex.db should be empty\n4. Add monitoring check that alerts if DB size drops below expected minimum\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":97,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-13T18:59:45.017112+00:00","updated_at":"2026-04-13T18:59:45.017112+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"claude","payload_json":"{\"completion_shas\": [\"0b57c47b28040292bd6266cffd00fc937da736fd\"], \"completion_shas_checked_at\": \"2026-04-13T18:59:44.999963+00:00\", \"completion_shas_missing\": [\"fb730f63d29d2b805432c96faee283a18b923627\", \"1a3d6a7bca4ee597a2bde57a72e5784fb6e1e3f7\"]}"},{"id":"7afeeab6-a0de-49d7-8897-d28bc957cfe7","title":"[Senate] Orchestra operator watchdog and self-repair loop","description":"Continuously audit Orchestra supervisor health, task throughput, merge-gate failures, deploy failures, and stalled tasks; make targeted fixes in Orchestra or SciDEX when safe; merge/deploy fixes and verify resumed progress.","status":"blocked","priority":96,"task_type":"recurring","frequency":"every-2h","assigned_slot":"","started_at":null,"completed_at":"2026-04-24T22:59:01.358188+00:00","updated_at":"2026-04-25T00:03:49.073407+00:00","summary":"","completion_notes":"Released by supervisor slot 46 because credential acquisition failed after pre-claim. Reason: worktree_creation_failed","last_error":"acquire_fail:worktree_creation_failed","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/codex_orchestra_operator_watchdog_spec.md","provider":"any","payload_json":"{\"requirements\": {\"coding\": 9, \"safety\": 8, \"reasoning\": 7}, \"_stall_skip_providers\": [], \"_stall_requeued_by\": \"codex\", \"_stall_requeued_at\": \"2026-04-11 02:12:00\", \"completion_shas\": [\"e092542e1ce8e1849ada22771861b1c1d36d0fda\", \"dc6a7647cc2bca8556ccae7c77a8ae182a7da55c\", \"dd3443ec0e70c5f0000928bd0b8b021a6d4c197b\", \"804302bde400c57dd2b011159def404f54da9e2b\", \"8e717c2d5f68320db4d75f105f7a455c729564a8\", \"0aee197d5eace9909bb5264149e97cf2cba03b09\"], \"completion_shas_checked_at\": \"2026-04-13T04:39:29.410277+00:00\", \"completion_shas_missing\": [\"a3b2871688a7d47d9979364202ce1fcdf17fe347\", \"c450376a6dd8757134c6e112db0f64781859b91f\", \"8c3b7e2cbc7e53d06c896889df3968b7b7b2712f\", \"bd6ac5e99c201f61311c60159c7179b473aff6fe\", \"9c0883067d7475daa5a1860af1d4a7e72451f9c6\", \"42eb689112c0d3e4b8fecc14cec076b42b3c00c9\"], \"_stall_skip_at\": {}, \"_stall_skip_pruned_at\": \"2026-04-14T10:37:14.022390+00:00\"}"},{"id":"ee42ebc1-7e25-48cd-a07f-4fdad9cda346","title":"[Senate] Throttle gap factory: 2472 open gaps, 0.77% conversion to analyses","description":"Senate prioritization run 42 also flagged this. The knowledge_gaps table grew from 48 → 2472 in one prioritization-quest cycle (50x). Only 19 of those 2472 gaps have ever produced an analysis (0.77%). The gap factory is creating gaps faster than the system can process them, and most of the new gaps appear to be low-quality (high-volume PubMed extraction without filtering). Recommended fixes: (1) Find the gap factory recurring task and lower its frequency or batch size, (2) Add a quality filter to the gap factory so only gaps with importance_score >= 0.5 are inserted, (3) Close gaps older than 30 days with status='open' and zero downstream activity, (4) Add a per-cycle cap on new gap inserts (e.g. max 50 per cycle). Document in dff08e77 spec under run 43.\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":96,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-14T12:51:58.619070+00:00","updated_at":"2026-04-14T12:51:58.619070+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/ee42ebc1_7e2_spec.md","provider":"any","payload_json":"{\"requirements\": {\"coding\": 7, \"analysis\": 7, \"reasoning\": 7}, \"completion_shas\": [\"236e873a980a9297e44425c9513d714ab8948464\", \"aea83b4885c9bef5fb53aa975f61ae4f85a574e3\", \"8f136147ff02e352712e8c60c2057d584637ba66\", \"9e45f97e03eeb0c10e11e7e8427ad3ec9e07104e\", \"16de437e85ff765ba11b1c910f873ee50a07d24d\", \"9964d12536daaca266ad0795d3f4f0e4f0151f47\", \"37c7ec199a3a449c590ff8afa926f0084dce0041\"], \"completion_shas_checked_at\": \"2026-04-14T12:51:58.600511+00:00\", \"_stall_skip_providers\": [], \"_stall_requeued_by\": \"minimax\", \"_stall_requeued_at\": \"2026-04-13 21:14:29\", \"_stall_skip_at\": {}, \"_stall_skip_pruned_at\": \"2026-04-14T10:37:14.022390+00:00\"}"},{"id":"ce1f232d-c2b3-4b27-b1c1-355ddc681bfa","title":"[Senate] Investigate push_main race that drops commits from main","description":"Today's audit found that multiple commits across multiple agents got silently rolled out of remote main, including the v1 economics participation drivers, v2 credit backprop, research squads, versioned datasets, plus parallel work from at least one other agent (reward_emission_driver.py, wiki_edit_market_driver.py). The push pattern in orchestra/sync.py:_do_push_main is: fetch origin/main → reset --hard origin/main → merge branch → push origin main. There is no force flag, but the remote has no branch protection (gh api repos/SciDEX-AI/SciDEX/branches/main/protection returns 404). Investigate: is there a script doing git push --force, OR is something in the SciDEX repo's remote settings allowing non-fast-forward pushes, OR is there a race where two agents both reset to the same stale origin/main and one of them succeeds with a non-FF that wipes the other? Add either branch protection on main or a server-side hook that rejects non-fast-forward pushes. Workaround in the meantime: orchestra_watchdog.py now passes critical-files config to repo_health_monitor.sh which auto-restores deleted files within 50 commits — but that's a band-aid, not a fix.\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":96,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-13T21:21:14.923798+00:00","updated_at":"2026-04-13T21:21:14.923798+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/ce1f232d_c2b_spec.md","provider":"any","payload_json":"{\"requirements\": {\"coding\": 8, \"safety\": 9, \"analysis\": 7}, \"completion_shas\": [\"29eb353f9f39d17dbf8d45cecb51ac053e364ed7\"], \"completion_shas_checked_at\": \"2026-04-13T21:21:14.904623+00:00\", \"completion_shas_missing\": [\"3fa4eafc0818521ecd019786153821a9dc23d3fb\", \"245e710ce2023d9189d012c93fbd6141e563ecb6\", \"1dd4ed84a5f37a747b92defb773854ad9c0e596c\"]}"},{"id":"89de42d0-d99a-40db-89a2-53cf2a60911d","title":"[Senate] Global convergence monitor — detect drift, duplication, and slop","description":"Build an automated system health check that runs every cycle and detects:\n\n1. **Task duplication**: Find tasks with >70% title similarity (Levenshtein or token overlap). Close duplicates keeping the oldest.\n2. **Circular work**: Detect agents creating bug tasks for issues they caused (e.g., agent breaks /exchange, another agent creates P95 fix task)\n3. **Empty deliverables**: Flag completed tasks whose branches have 0 meaningful code changes (only spec files or comments)\n4. **KG edge quality**: Count edges with empty source_id/target_id (currently 399/766 = 52% are empty). Track this ratio over time — it should decrease.\n5. **Hypothesis quality**: Flag hypotheses with no PubMed citations, no KG edges, or generic titles\n6. **API stability**: Track 500 errors per endpoint over time. Alert if error rate > 5%\n7. **Resource waste**: Identify tasks that consumed tokens but produced no DB changes or code changes\n\nOutput a convergence_report.json with scores for: data_quality, task_efficiency, system_stability, knowledge_growth_rate.\nStore in DB: convergence_reports table (timestamp, report_json, overall_score).\nDisplay on /senate dashboard.\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":96,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-13T18:52:39.909400+00:00","updated_at":"2026-04-13T18:52:39.909400+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"claude","payload_json":"{\"completion_shas\": [\"c28f0b644ce9905cf411c58dbfd01edf8c608f74\"], \"completion_shas_checked_at\": \"2026-04-13T18:52:39.889354+00:00\"}"},{"id":"14d4d36e-5913-460b-8bc3-14a6666f82d5","title":"[Senate] Design resource allocation economics framework","description":"Design the economics layer for SciDEX resource allocation. Create docs/planning/specs/economics_framework_spec.md with:\n     \n1. Resource types: LLM tokens (by model tier), CPU cycles, storage, API calls (PubMed, etc.)\n2. Budget model: Each hypothesis/entity/gap/analysis has an allocation budget (token credits)\n3. Allocation scoring: Composite score from evidence strength, novelty, strategic alignment, community interest\n4. Governance: Proposals to increase allocation, evidence-based justification requirements\n5. Market mechanism: Hypotheses with higher Exchange scores get proportionally more resources\n6. Dynamic rebalancing: Senate reviews allocations periodically based on ROI (KG edges gained per token spent)\n\nImplement the core DB tables: resource_budgets (entity_type, entity_id, token_budget, cpu_budget, priority_score), \nresource_usage (entity_id, resource_type, amount_used, timestamp), \nallocation_proposals (proposer, entity_id, requested_amount, justification, status, votes).","status":"done","priority":95,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-24T15:38:54.933048+00:00","updated_at":"2026-04-24T15:38:54.933048+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"claude","payload_json":"{}"},{"id":"93a2b028-d931-457a-8c26-94e7d7bfff22","title":"[Senate] Fix XSS vulnerabilities with html.escape() in all HTML responses","description":"Critical XSS vulnerabilities (H-1, H-2, H-3) in api.py. User-controlled data from database embedded in HTML without escaping. Locations: hypothesis_detail (lines 1311-1356), entity_detail (lines 2895-2993), and all HTML-generating functions. Import html.escape() and apply to ALL user-controlled content (entity names, hypothesis titles, evidence claims, paper titles, etc.) before embedding in HTML. See docs/planning/security_audit_2026-04-02.md for full details.\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":95,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-24T15:32:06.435057+00:00","updated_at":"2026-04-24T15:32:06.435057+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/93a2b028_d93_spec.md","provider":"claude","payload_json":"{\"requirements\": {\"coding\": 9, \"safety\": 10}, \"completion_shas\": [\"2f0a18042bdf05df1257c38a751895235608772c\"], \"completion_shas_checked_at\": \"2026-04-21T02:35:34.349644+00:00\"}"},{"id":"ce02eceb-b31e-46d5-9de5-f4abdbcce3f8","title":"[Senate] Security Manager: periodic git history scan for leaked secrets and credentials","description":"Act as Chief Security Officer. Scan the ENTIRE git history for leaked secrets:\n1. Run: git log --all --diff-filter=A -p | grep -iE \"(api_key|secret|password|token|AWS_SECRET|AKIAQ)\" \n2. Check .env files, config files, spec files, QUESTS.md, task descriptions for secrets\n3. If found: document the leak, assess exposure (was it pushed to GitHub?), rotate the key\n4. Check AWS Secrets Manager for proper secret storage (scidex-s3-readonly, scidex-s3-readwrite)\n5. Verify no hardcoded credentials in api.py, backup.sh, or any Python scripts\n6. Create SECURITY.md documenting findings and remediation steps\nCRITICAL: Do NOT lock anyone out. Do NOT change SSH keys, passwords, or access controls without explicit approval. Do NOT modify nginx auth. Document and flag only — let human approve changes.\nCoordinate with: Quest 14 (Backup), Quest 13 (Architecture), all running agents.\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":95,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-24T15:17:09.712807+00:00","updated_at":"2026-04-24T15:17:09.712807+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"claude","payload_json":"{\"requirements\": {\"coding\": 9, \"safety\": 10}, \"completion_shas\": [\"c2a8d5449\"], \"completion_shas_checked_at\": \"\"}"},{"id":"d2881e69-e786-4fd4-a902-ef3c515912ea","title":"[Senate] Fix database corruption preventing /senate page from loading","description":"The /senate page returns 500 due to 'database disk image is malformed' error when querying the events table in event_bus.py:155. Other tables (analyses, hypotheses) are intact. Need to either: 1) Rebuild events table, 2) Add error handling to gracefully degrade, or 3) Recover from WAL. Error: sqlite3.DatabaseError in get_event_stats() when executing 'SELECT event_type, COUNT(*) FROM events'.","status":"done","priority":95,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-24T15:15:08.538412+00:00","updated_at":"2026-04-24T15:15:08.538412+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/d2881e69_e78_spec.md","provider":"claude","payload_json":"{\"requirements\": {\"coding\": 7}, \"completion_shas\": [\"86caaa85e\"], \"completion_shas_checked_at\": \"\"}"},{"id":"c4c42350-d31e-476e-b840-06adc6e4543c","title":"[Senate] Fix database corruption causing 500 error","description":"Main scidex.db is corrupted (malformed disk image), causing /senate page to return 500 error. 183 broken links across site. Need to restore from intact backup in worktree. Backup has 21/23 analyses, may need to recover 2 recent analyses from git history or re-run.","status":"done","priority":95,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-24T15:14:44.070164+00:00","updated_at":"2026-04-24T15:14:44.070164+00:00","summary":"Transient DB corruption - resolved by removing WAL files and restarting API","completion_notes":"Auto-release: non-recurring task produced no commits this iteration; requeuing for next cycle","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/c4c42350_d31_spec.md","provider":"claude","payload_json":"{\"requirements\": {\"coding\": 8, \"safety\": 8}}"},{"id":"fbe73f92-cc52-4000-8f73-f00fbc8028d4","title":"[Senate] Fix: abandonment_watchdog missing _stall_skip_at timestamps (quest engine GLM loop)","description":"## Root Cause\n\n`orchestra/abandonment_watchdog.py` lines 535-541 add a provider to\n`_stall_skip_providers` WITHOUT adding a `_stall_skip_at` timestamp.\n`prune_expired_stall_skips()` (called with `treat_legacy_as_expired=True`)\nremoves any entry that has no timestamp, so the GLM ban is pruned\nimmediately and GLM reclaims the task on the next tick.\n\nThis caused task 80ffb77b-8391-493c-8644-37086c8e2e3c (quest engine CI)\nto be abandoned 29 times with rate_limit_retries_exhausted:glm.\n\n## Fix\n\nIn `/home/ubuntu/Orchestra/orchestra/abandonment_watchdog.py`, change the\n`rebalance_stuck_tasks` function to also update `_stall_skip_at`:\n\n```python\n# BEFORE (lines 535-541):\nskip_list = list(payload.get(\"_stall_skip_providers\") or [])\nadded_providers = []\nfor p in providers:\n    if p not in skip_list:\n        skip_list.append(p)\n        added_providers.append(p)\npayload[\"_stall_skip_providers\"] = skip_list\n\n# AFTER:\nskip_list = list(payload.get(\"_stall_skip_providers\") or [])\nskip_at = payload.get(\"_stall_skip_at\") or {}\nif not isinstance(skip_at, dict):\n    skip_at = {}\nadded_providers = []\nfor p in providers:\n    if p not in skip_list:\n        skip_list.append(p)\n        added_providers.append(p)\n    # Refresh timestamp so prune_expired_stall_skips keeps this entry alive.\n    skip_at[p] = now_iso\npayload[\"_stall_skip_providers\"] = skip_list\npayload[\"_stall_skip_at\"] = skip_at\n```\n\nAlso update the `changed` check to include timestamp refreshes:\n```python\nchanged = bool(added_providers) or bool(skip_at) or bool(row[\"slot_affinity\"]) or bool(row[\"assigned_slot\"])\n```\n\n## After the code fix\n\n1. Commit to the Orchestra repo with a clear message\n2. Restart the Orchestra supervisor so the fix takes effect\n3. Reset the quest engine task: `orchestra reset 80ffb77b-8391-493c-8644-37086c8e2e3c --project SciDEX`\n4. Update the quest engine task provider from `any` to exclude GLM: use Python Orchestra services to set `provider = 'minimax'` on task 80ffb77b, so GLM never routes there again\n\n## Verification\n\nAfter the fix:\n- The next time the abandonment watchdog runs for any rate-limited task, check that `_stall_skip_at` is populated in the payload\n- Confirm the quest engine task (80ffb77b) is picked up by a non-GLM provider and completes successfully","status":"done","priority":95,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-22T22:56:58.588717+00:00","updated_at":"2026-04-22T22:56:58.588717+00:00","summary":"","completion_notes":"Fix pushed to branch orchestra/task/fbe73f92-abandonment-watchdog-missing-stall-skip (ec579d39b). origin/main still needs the fix merged — branch is ahead. Post-fix operational steps (supervisor restart, quest engine task reset, provider update to 'minimax') could not be executed due to lack of sudo/DB access; those are operator responsibilities. Code fix verified correct: skip_at dict is now populated with now_iso for every provider in the loop, and the changed check includes skip_at refreshes.","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"claude","payload_json":"{}"},{"id":"a3ec5f82-d626-4eef-9c54-b618bdb65904","title":"[Senate] ESCALATION: Apply abandonment_watchdog stall-skip-at fix manually (slot 40 env broken)","description":"## Why This Task Exists\n\nTask fbe73f92-cc52-4000-8f73-f00fbc8028d4 (\"Fix abandonment_watchdog missing _stall_skip_at\") has been stuck in a retry loop on slot 40. Slot 40 cannot complete it because:\n\n1. `/home/ubuntu/Orchestra/` filesystem is mounted EROFS (read-only) in this environment\n2. The Bash tool's session-env directory (`/home/ubuntu/Orchestra/data/claude_creds/max_outlook/session-env/`) is also in the EROFS filesystem, making ALL Bash commands fail\n3. The SciDEX worktree for task fbe73f92 was deleted/cleaned, making it non-functional\n\n## Required Fix\n\nIn `/home/ubuntu/Orchestra/orchestra/abandonment_watchdog.py`, change the `rebalance_stuck_tasks` function (around lines 535-543):\n\n**BEFORE:**\n```python\nskip_list = list(payload.get(\"_stall_skip_providers\") or [])\nadded_providers = []\nfor p in providers:\n    if p not in skip_list:\n        skip_list.append(p)\n        added_providers.append(p)\npayload[\"_stall_skip_providers\"] = skip_list\n\nchanged = bool(added_providers) or bool(row[\"slot_affinity\"]) or bool(row[\"assigned_slot\"])\n```\n\n**AFTER:**\n```python\nskip_list = list(payload.get(\"_stall_skip_providers\") or [])\nskip_at = payload.get(\"_stall_skip_at\") or {}\nif not isinstance(skip_at, dict):\n    skip_at = {}\nnow_iso = datetime.datetime.now(datetime.timezone.utc).isoformat()\nadded_providers = []\nfor p in providers:\n    if p not in skip_list:\n        skip_list.append(p)\n        added_providers.append(p)\n    # Refresh timestamp so prune_expired_stall_skips keeps this entry alive.\n    skip_at[p] = now_iso\npayload[\"_stall_skip_providers\"] = skip_list\npayload[\"_stall_skip_at\"] = skip_at\n\nchanged = bool(added_providers) or bool(skip_at) or bool(row[\"slot_affinity\"]) or bool(row[\"assigned_slot\"])\n```\n\nNote: The `now_iso` variable is already defined later in the function (line 545). Move it before this block or reuse it.\n\n## After the Code Fix\n\n1. Commit: `[Watchdog] Fix rebalance_stuck_tasks: add _stall_skip_at timestamps [task:fbe73f92-cc52-4000-8f73-f00fbc8028d4]`\n2. Restart the Orchestra supervisor: `sudo systemctl restart orchestra-supervisor`\n3. Reset quest engine task: `orchestra reset 80ffb77b-8391-493c-8644-37086c8e2e3c --project SciDEX`\n4. Update task 80ffb77b provider to 'minimax' to permanently exclude GLM\n5. Close task fbe73f92 as resolved\n\n## Current State of Quest Engine Task (80ffb77b)\n\nHas `_stall_skip_providers: [\"glm\"]` but MISSING `_stall_skip_at`. The ban is pruned on each watchdog tick because of the bug, causing GLM to keep reclaiming the task.\n","status":"done","priority":95,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-22T22:38:59.828024+00:00","updated_at":"2026-04-22T22:38:59.828024+00:00","summary":"","completion_notes":"Escalation failed: /home/ubuntu/Orchestra is mounted EROFS (read-only). The edit to abandonment_watchdog.py cannot be applied. The fix was prepared at /tmp/abandonment_watchdog.py but cannot be copied to the target path. Need a slot with writable Orchestra filesystem (not EROFS) to apply this fix.","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{}"},{"id":"a100a65e-2df7-4fba-9432-c4b9c1bc9623","title":"[Senate] Build /quests meta-dashboard — live quest/task tracking with VM resources","description":"Build a dynamic /quests page that is the central mission control for SciDEX:\n\n1. QUEST OVERVIEW: Query Orchestra DB to show all quests with progress bars (done/running/open per quest prefix like [Agora], [Exchange], etc.)\n2. LIVE TASKS: Show currently running tasks with elapsed time, agent assignment, and status. Show recently completed tasks (last 24h) with outcomes.\n3. VM RESOURCES: Display real-time memory usage, CPU load, disk usage, running processes (ps aux for scidex/orchestra/agent processes). Use /proc/meminfo and /proc/loadavg.\n4. AUTO-REFRESH: Page should refresh data every 15 seconds via JavaScript fetch() to a JSON API endpoint /api/quests/status\n5. PROCESS TRACKING: Show active agent worktrees, their branches, and what task each is working on.\n6. RECENT WORK SUMMARY: Last 10 completed tasks with title, completion time, and any output summary.\n7. LINK TO /resources page (Bedrock costs) and /senate (governance). Cross-reference with resource utilization quest.\n8. Add /quests link to the main nav menu on all pages.\n\nThe /api/quests/status endpoint should return JSON with: quest_progress, running_tasks, recent_completions, vm_stats, active_agents.\nOrchestra DB path: /home/ubuntu/Orchestra/orchestra.db, project_id: 5e530ff5\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":95,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-14T13:30:39.242818+00:00","updated_at":"2026-04-14T13:30:39.242818+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{\"_stall_skip_providers\": [], \"_stall_requeued_by\": \"minimax\", \"_stall_requeued_at\": \"2026-04-13 21:30:10\", \"_stall_skip_at\": {}, \"_stall_skip_pruned_at\": \"2026-04-14T10:37:14.022390+00:00\", \"completion_shas\": [\"c5fde5f3cfd24fad86c2e309e46ff89f5db73356\", \"afd77a9834ddf887776501b6ca744918fcf96c6e\", \"a433ad0d6d196fa10ea05b74ff5f925dea906e95\", \"46d0ec98e56873a64d9e22abd9a44e6facc3890d\", \"b663b3250ecb3694c490009d4c3def8a053c78c7\", \"eb9620d4a67c5b536cecc7569fea146c40a3eaf3\", \"78874f7e5ac99d9cca8db82670aa64538e9708ef\", \"0924d103d0a7761868a4593a4f17e969c0d045af\", \"215ef26b4a5e396384ec12248ef1fc83ed2cbbfd\"], \"completion_shas_checked_at\": \"2026-04-14T13:19:20.696764+00:00\"}"},{"id":"a20a0c44-2159-4409-b927-3c4df38070cc","title":"[Senate] HUMAN: Add GitHub branch protection on SciDEX/main","description":"The push_main race root cause was identified on 2026-04-11 (Orchestra commit 0768404a5): a stale local branch literally named refs/heads/origin/main shadowed the remote-tracking ref and caused git to silently resolve `origin/main` to a stale snapshot, dropping commits on push. Client-side fixes are deployed (purge ambiguous refs + --force-with-lease pinned to fetched SHA). For belt-and-suspenders, an org admin needs to enable GitHub branch protection on SciDEX-AI/SciDEX/main with: required_linear_history=true, allow_force_pushes=false, allow_deletions=false. The current PAT (kganjam) returns 404 on the protection API so this MUST be done from the GitHub UI. Steps: github.com/SciDEX-AI/SciDEX/settings/branches → Add branch protection rule → Branch name pattern: main → check 'Require linear history', 'Do not allow bypassing the above settings', uncheck force pushes, uncheck deletions. Once enabled, even a buggy script that tries to non-FF push will be rejected at the GitHub API.\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":95,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-14T01:41:25.404264+00:00","updated_at":"2026-04-14T01:41:25.404264+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/a20a0c44_215_spec.md","provider":"any","payload_json":"{\"requirements\": {\"safety\": 8, \"analysis\": 6}, \"_stall_skip_providers\": [], \"_stall_requeued_by\": \"codex\", \"_stall_requeued_at\": \"2026-04-11 09:51:17\", \"completion_shas\": [\"0a4ac6ad616f6b57a6341dfcb194c8be6317e8c6\", \"0bfe39cd57884742b0242beaacc908d6642efbbe\"], \"completion_shas_checked_at\": \"2026-04-14T01:41:25.384127+00:00\", \"_stall_skip_at\": {}, \"_stall_skip_pruned_at\": \"2026-04-14T10:37:14.022390+00:00\"}"},{"id":"d42d192d-e344-40fa-85f9-d68f28a3addc","title":"[Senate] Fix zombie uvicorn process crash loop","description":"Critical: API service was in crash loop (restart counter 54+) due to zombie uvicorn process (PID 3912678) holding port 8000. Killed zombie process, service now healthy. All pages return 200. Root cause: previous uvicorn process didn't terminate cleanly. Resolution: kill -9 zombie PID. Prevention: investigate why uvicorn sometimes doesn't terminate on service stop.\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":95,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-13T21:42:15.712369+00:00","updated_at":"2026-04-13T21:42:15.712369+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/d42d192d_e34_spec.md","provider":"claude","payload_json":"{\"requirements\": {\"coding\": 8, \"safety\": 8}, \"completion_shas\": [\"ce02f7f7eff174cc35008b7d57f67427d4ae60c4\", \"6364567caf216df73e37c734daf8192b7b5145a1\"], \"completion_shas_checked_at\": \"2026-04-13T21:42:15.695454+00:00\"}"},{"id":"f6b0ff49-db9c-4e4b-83d3-98b807154bcd","title":"[Senate] Implement authentication on POST /api/debate/trigger endpoint","description":"Critical: POST /api/debate/trigger has no authentication (C-5). Anyone can create debates causing DoS and cost amplification. Implement API key authentication using FastAPI Depends and Header. Add SCIDEX_API_KEY env var check. See security_audit_2026-04-02.md for implementation example.\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":95,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-13T21:20:27.682469+00:00","updated_at":"2026-04-13T21:20:27.682469+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/f6b0ff49_db9_spec.md","provider":"claude","payload_json":"{\"requirements\": {\"coding\": 6, \"reasoning\": 7}, \"completion_shas\": [\"552a0bfca872f2fcf86ee261d99cc34217e7276e\"], \"completion_shas_checked_at\": \"2026-04-13T21:20:27.659123+00:00\"}"},{"id":"0ce71340-e3e6-4f7d-90e8-79dfdc684872","title":"[Senate] Rigor score card — 8-dim evaluation per hypothesis/analysis (Alpha1 rubric)","description":"Recurring every-6h. For each hypothesis/analysis without a rigor score card: spawn 2 independent evaluator agents (Skeptic + second instance), evaluate across 8 dimensions of methodological rigor (scientific premise, study design, blinding, power analysis, resource identification, statistical reporting, data availability, SABV) grounded in NIH/MDAR/ARRIVE 2.0/CONSORT/EQUATOR guidelines. Every rating carries evidence citation from the paper text. Attach score card as artifact. See task-id-pending_rigor_score_card_spec.md + quest_epistemic_rigor.md WS-rigor-ruleset.","status":"blocked","priority":93,"task_type":"recurring","frequency":"every-6h","assigned_slot":"","started_at":null,"completed_at":"2026-04-24T12:00:50.389917+00:00","updated_at":"2026-04-24T13:13:28.691816+00:00","summary":"","completion_notes":"Auto-release: recurring task had no work this cycle","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/task-id-pending_rigor_score_card_spec.md","provider":"any","payload_json":"{\"_stall_skip_providers\": [\"glm\"], \"_watchdog_repair_created_at\": \"2026-04-22T21:27:04.671980+00:00\", \"_watchdog_repair_task_id\": \"944397a1-67c8-4e37-8bdd-464bcb2c1f7f\", \"requirements\": {\"coding\": 7, \"reasoning\": 7, \"safety\": 8}}"},{"id":"c3c65190-4396-44d1-b06e-2a92ff46c1e7","title":"[Senate] Triage 25 pending governance decisions","description":"25 governance decisions are pending. Untriaged governance backlogs block artifact lifecycle changes and accountability.\n\nVerification:\n- 25 governance decisions are reviewed and advanced, rejected, or escalated\n- Each decision has a rationale tied to evidence_json or affected artifact state\n- Remaining pending governance decisions count is reduced\n\nStart by reading this task's spec. Select oldest pending governance_decisions, prioritizing content with active owners or high usage. Inspect affected artifacts and evidence_json before changing status. Advance, reject, or escalate each decision with an auditable rationale.","status":"done","priority":93,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-23T01:00:29.115394+00:00","updated_at":"2026-04-23T01:00:29.115394+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_engine_governance_decision_triage_spec.md","provider":"any","payload_json":"{}"},{"id":"a61b22a3-95c1-4ffc-9c1a-27e29c26def8","title":"[Senate] Triage 25 pending governance decisions","description":"Governance decisions are pending. Untriaged governance backlogs block artifact lifecycle changes and accountability.\n\nVerification:\n- 25 governance decisions are reviewed and advanced, rejected, or escalated\n- Each decision has a rationale tied to evidence_json or affected artifact state\n- Remaining pending governance decisions is reduced\n\nStart by reading this task's spec and checking for duplicate recent work.","status":"done","priority":93,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-22T20:36:44.173735+00:00","updated_at":"2026-04-22T20:36:44.173735+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_engine_governance_decision_triage_spec.md","provider":"any","payload_json":"{}"},{"id":"100dea35-fc92-4aac-910e-e74a792b5964","title":"[Senate] Triage 25 pending governance decisions","description":"Many governance decisions are pending. Untriaged governance backlogs block artifact lifecycle changes and accountability.\n\nVerification:\n- 25 governance decisions are reviewed and advanced, rejected, or escalated\n- Each decision has a rationale tied to evidence_json or affected artifact state\n- Remaining pending governance decisions is recorded before and after\n\nStart by reading this task's spec and checking for duplicate recent work.","status":"done","priority":93,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-21T20:02:36.780739+00:00","updated_at":"2026-04-21T20:02:36.780739+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_engine_governance_decision_triage_spec.md","provider":"any","payload_json":"{}"},{"id":"916e63d0-c697-4687-b397-4e4941e23a5d","title":"[Senate] Model artifacts WS4: eval gate before promotion","description":"Candidate → promoted lifecycle: new version must pass stat-sig improvement on benchmark before is_latest flips.","status":"done","priority":93,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-18T14:11:58.838761+00:00","updated_at":"2026-04-18T14:11:58.838761+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/task-id-pending_model_artifacts_ws4_eval_gate_spec.md","provider":"any","payload_json":"{\"_reset_note\": \"This task was reset after a database incident on 2026-04-17.\\n\\n**Context:** SciDEX migrated from SQLite to PostgreSQL after recurring DB\\ncorruption. Some work done during Apr 16-17 may have been lost.\\n\\n**Before starting work:**\\n1. Check if the task's goal is ALREADY satisfied (run the relevant checks)\\n2. Check `git log --all --grep=task:YOUR_TASK_ID` for prior commits\\n3. If complete, verify and mark done. If partial, continue. If not done, proceed.\\n\\n**DB change:** SciDEX now uses PostgreSQL. `get_db()` auto-detects via\\nSCIDEX_DB_BACKEND=postgres env var.\", \"_reset_at\": \"2026-04-18T06:29:22.046013+00:00\", \"_reset_from_status\": \"done\"}"},{"id":"ac50dffd-8951-47a1-8bf5-528c8f99fb24","title":"[Senate] Fix command injection in bridge.py file listing with safe subprocess","description":"Critical (C-4): bridge.py:17 uses shell=True with f-string for find command. Replace with list-based subprocess call to prevent command injection. See security_audit_2026-04-02.md for safe implementation example.\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":92,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-25T02:30:29.405806+00:00","updated_at":"2026-04-25T02:30:29.405806+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/ac50dffd_895_spec.md","provider":"claude","payload_json":"{\"requirements\": {\"coding\": 9, \"safety\": 10}, \"completion_shas\": [\"802c3cdefd2fb74b8b1f6eafd0e6facb84d9b441\"], \"completion_shas_checked_at\": \"2026-04-21T02:07:31.638552+00:00\"}"},{"id":"c3a426dc-ea93-4148-84b5-b83e3e1aaf24","title":"[Senate] Calibration slashing for miscalibrated forecasters (driver #16)","description":"Recurring driver implementing Brier-score reputation slashing. When a market settles, compute each market participant's Brier score for that prediction (squared error from settlement price). If their Brier > 0.25 (well-calibrated forecasters average ~0.10), slash 5% of their staked tokens AND nudge agent_registry.reputation_score downward by 0.02 (floor 0). Prevents inflation, encourages calibrated betting, makes truth the only sustainable strategy. See economics_v2_credit_backprop_spec.md Tier 1 #3.","status":"blocked","priority":92,"task_type":"recurring","frequency":"every-6h","assigned_slot":"","started_at":null,"completed_at":"2026-04-23T17:06:33.637937+00:00","updated_at":"2026-04-24T13:13:28.003139+00:00","summary":"","completion_notes":"Auto-release: recurring task had no work this cycle","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/economics_v2_credit_backprop_spec.md","provider":"any","payload_json":"{\"requirements\": {\"coding\": 6, \"analysis\": 7, \"safety\": 9}, \"completion_shas\": [\"b2ec2f0f5aa908d0f74932578f1edb1f2f9f6f0c\", \"8218c5ba06a959a2f041abf3b2ba35c56569ee90\"], \"completion_shas_checked_at\": \"2026-04-12T23:53:26.513965+00:00\", \"completion_shas_missing\": [\"891b43ca5c1aae3fb95bfa8173c613725c6c409f\", \"ab25d9cb561066355a5156a8eb9164f7fa2aa141\", \"5e70d5d740b73993de9c5cb041bd6a618bae20da\", \"d077772dfdeeeea90777857a3156c113258456c0\", \"3a68fe3c49c8820cf0fe570095270bc47f40bb4f\", \"2e963bcd10aab95f7b8d064cd567bba907f3bc0a\", \"07d886dfbf05ed65c2a735f14bac61da95e33fc1\"]}"},{"id":"255220b3-317c-4b12-b99e-a866b2b61ae5","title":"[Senate] Edit review queue (driver #9)","description":"Recurring driver. Any pending wiki edit (edit_history rows with status='proposed') must be reviewed by 2+ agents before merge. Pick reviewers from agent_registry, write edit_reviews rows, gate the merge on 2+ approvals. On no candidates, release as no-op. See driver #9.","status":"blocked","priority":92,"task_type":"recurring","frequency":"every-6h","assigned_slot":"","started_at":null,"completed_at":"2026-04-23T21:36:31.641438+00:00","updated_at":"2026-04-24T13:13:27.853918+00:00","summary":"","completion_notes":"Auto-release: recurring task had no work this cycle","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/economics_participation_drivers_spec.md","provider":"any","payload_json":"{\"requirements\": {\"coding\": 6, \"analysis\": 6, \"safety\": 7}, \"completion_shas\": [\"f0b848346a66549bcc7c5fa70f4528bb12c8a563\"], \"completion_shas_checked_at\": \"2026-04-13T09:58:12.213152+00:00\", \"completion_shas_missing\": [\"914b5cdaef84206556706972439c579aa14bd3e5\", \"f3445d6733ece0bb33298db1d0c8f2d40d58f676\", \"d0b3695caaa154ed701625cdd7b0708f08352d07\", \"a80f034f50720bf01937257cf5c91dba63eafcf4\"]}"},{"id":"dff08e77-5e49-4da5-a9ef-fbfe7de3dc17","title":"[Senate] Holistic task prioritization and self-governance","description":"Periodically review all open tasks, adjust priorities holistically based on system state, strategic alignment, staleness, and dependencies. Phase 1: rule-based scoring. Phase 2: market-informed (tasks as tradeable artifacts). Phase 3: debate-driven prioritization. See docs/planning/specs/task_prioritization_quest_spec.md","status":"blocked","priority":92,"task_type":"recurring","frequency":"every-2h","assigned_slot":"","started_at":null,"completed_at":"2026-04-23T19:31:05.744056+00:00","updated_at":"2026-04-24T13:13:26.547863+00:00","summary":"","completion_notes":"Auto-release: recurring task had no work this cycle","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/dff08e77_5e4_spec.md","provider":"any","payload_json":"{\"requirements\": {\"coding\": 7, \"reasoning\": 7, \"analysis\": 6, \"safety\": 9}, \"_stall_skip_providers\": [], \"_stall_requeued_by\": \"codex\", \"_stall_requeued_at\": \"2026-04-11 02:33:57\", \"completion_shas\": [\"3b083dbc6b96f250eb6b93b317fa4020f122e326\", \"c2913c8e5f3d28369e4afe3725debec4637ec0bf\", \"f70ba32ad1bd6fd8c591e1d94dd43314e60c3566\", \"7133931a47c3dd52d11f3158c4b69488a7ddf472\", \"b1b8c13a2b64df2c2b1c563adbf6a2d3eb48cb10\", 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Open proposals need decision-readiness review so governance does not accumulate stale unresolved motions.\n\nVerification:\n- 25 open Senate proposals are reviewed and advanced, rejected, or assigned explicit next steps\n- Each reviewed proposal has decision_reason, voting metadata, or a documented blocker\n- Remaining open Senate proposal count is reduced\n\nStart by reading this task's spec and checking for duplicate recent work.","status":"done","priority":92,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":null,"updated_at":"2026-04-23T17:20:41.134946+00:00","summary":"","completion_notes":"","last_error":"cli-reopen-manual: reopened — task was marked 'done' but has no task_runs row in (done/completed/success)","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_engine_senate_proposal_review_spec.md","provider":"any","payload_json":"{\"_stall_skip_providers\": [\"glm\"], \"_watchdog_repair_task_id\": \"6c95e39d-cb43-4265-9954-3f648c955d08\", \"_watchdog_repair_created_at\": \"2026-04-23T15:53:03.216619+00:00\"}"},{"id":"22c2771d-cf0f-43e7-952e-46c0a30cb182","title":"[Senate] Review 25 open Senate proposals for decision readiness","description":"Query `SELECT id, title, proposal_type, status, created_at, votes_for, votes_against FROM senate_proposals WHERE status IN ('open', 'proposed') ORDER BY created_at ASC LIMIT 25`. For each proposal: (1) check if quorum is reached, (2) evaluate argument quality, (3) update status to 'ready_for_decision' if quorum met and discussion is substantive, or 'needs_discussion' if not. Log decision reasoning per proposal. Success: 25 proposals evaluated, status fields updated, audit trail committed to DB.","status":"done","priority":92,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":null,"updated_at":"2026-04-23T15:16:12.716193+00:00","summary":"","completion_notes":"","last_error":"Paused after 5 exit-0 runs with no commits on branch=(none); stale worktree deleted","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_engine_senate_proposal_review_spec.md","provider":"any","payload_json":"{\"_watchdog_repair_task_id\": \"922fce87-fd8c-4804-8525-6cc1d362d59b\", \"_watchdog_repair_created_at\": \"2026-04-23T12:13:49.983713+00:00\"}"},{"id":"5c570c33-382a-4f17-92b8-8852ad2ca8fa","title":"[Senate] Audit epistemic rigor: identify 25 hypotheses with implausible confidence scores","description":"Many hypotheses have composite_score=1.0 but empty evidence_for fields, indicating inflated confidence with no citation support. This violates epistemic standards.\n\n## Steps\n1. Query: `SELECT id, title, composite_score, evidence_for FROM hypotheses WHERE composite_score >= 0.9 AND (evidence_for IS NULL OR evidence_for::text IN ('{}','[]','')) AND status != 'archived' LIMIT 25`\n2. For each hypothesis: verify the score by cross-checking the debate transcript quality and evidence fields\n3. Flag hypotheses with score >= 0.9 but zero evidence as \"overconfident\" and update their composite_score to reflect actual evidence state (typically 0.1-0.3 for unsupported claims)\n4. Log each correction to hypothesis_score_history or equivalent audit table\n5. Commit changes with descriptive message\n\n## Acceptance Criteria\n- [ ] 25 high-score zero-evidence hypotheses identified\n- [ ] composite_score corrected downward for overconfident hypotheses\n- [ ] Each change documented with rationale\n- [ ] Changes committed and pushed","status":"done","priority":92,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-23T04:49:52.169165+00:00","updated_at":"2026-04-23T04:49:52.169165+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_engine_hypothesis_confidence_calibration_spec.md","provider":"any","payload_json":"{}"},{"id":"734359ad-48fd-48f5-a250-81c336b19a76","title":"[Senate] Review 25 open Senate proposals for decision readiness","description":"The SciDEX Senate has open proposals that have not been assessed for decision-readiness. Query: `SELECT id, title, status, created_at FROM senate_proposals WHERE status IN ('open','proposed','draft') ORDER BY created_at LIMIT 25`. For each: (1) check if quorum is met, (2) verify supporting evidence is attached, (3) mark ready_for_vote=true or add a blocking_reason. Update proposal status where appropriate. Log decision-readiness assessment per proposal. Acceptance: 25 proposals reviewed, those meeting quorum marked ready, others have explicit blocking_reason. Verify via query counting proposals with ready_for_vote flag set.","status":"done","priority":92,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-22T23:22:31.738350+00:00","updated_at":"2026-04-22T23:22:31.738350+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_engine_senate_proposal_review_spec.md","provider":"any","payload_json":"{}"},{"id":"aeb9ae7a-977c-4e2d-ade2-43b2af97091d","title":"[Senate] Review 25 open Senate proposals for decision readiness","description":"Senate proposals are still proposed, pending, or voting. Open proposals need decision-readiness review so governance does not accumulate stale unresolved motions.\n\nVerification:\n- 25 open Senate proposals are reviewed and advanced, rejected, or assigned explicit next steps\n- Each reviewed proposal has decision_reason, voting metadata, or a documented blocker\n- Remaining open Senate proposal count is reduced\n\nStart by reading this task's spec and checking for duplicate recent work.","status":"done","priority":92,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-22T20:55:50.847568+00:00","updated_at":"2026-04-22T20:55:50.847568+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_engine_senate_proposal_review_spec.md","provider":"any","payload_json":"{}"},{"id":"d1de642e-529b-427a-aac1-ea5e4002f47d","title":"[Senate] Add pre-merge DB integrity check hook","description":"Create a git pre-merge hook (or wrapper for merge operations) that: 1) backs up scidex.db before merge 2) checks DB integrity after merge 3) auto-restores if integrity fails. Critical for preventing repeat of DB corruption incident.\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":92,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-18T14:04:09.315984+00:00","updated_at":"2026-04-18T14:04:09.315984+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{\"requirements\": {\"coding\": 5}, \"_stall_skip_providers\": [\"minimax\"], \"_stall_requeued_by\": \"minimax\", \"_stall_requeued_at\": \"2026-04-14 10:41:32\", \"_reset_note\": \"This task was reset after a database incident on 2026-04-17.\\n\\n**Context:** SciDEX migrated from SQLite to PostgreSQL after recurring DB\\ncorruption. Some work done during Apr 16-17 may have been lost.\\n\\n**Before starting work:**\\n1. Check if the task's goal is ALREADY satisfied (run the relevant checks)\\n2. Check `git log --all --grep=task:YOUR_TASK_ID` for prior commits\\n3. If complete, verify and mark done. If partial, continue. If not done, proceed.\\n\\n**DB change:** SciDEX now uses PostgreSQL. `get_db()` auto-detects via\\nSCIDEX_DB_BACKEND=postgres env var.\", \"_reset_at\": \"2026-04-18T06:29:22.046013+00:00\", \"_reset_from_status\": \"done\"}"},{"id":"fa300983-9ded-4d65-bb84-3645f55b972f","title":"[Senate] SALVAGE: review lost commit 07d886df (Senate calibration slashing driver)","description":"On 2026-04-11 the push_main race silently dropped 6 substantive commits from main. Each was independently implemented by another agent in parallel with mine. Today's audit recovered them as salvage branches on the remote so the work isn't lost. This task asks an agent to review one such commit and decide whether to merge it, reconcile it with the existing implementation, or close it as a duplicate.\n\nCommit: 07d886df (861+ lines)\nBranch: salvage/lost-2026-04-11-07d886df\nTitle:  Senate calibration slashing driver\n\nSteps: \n  1. git fetch origin salvage/lost-2026-04-11-07d886df\n  2. git log -p 07d886df | less   # review the diff\n  3. Compare against the current code in main (mine landed too — search for the relevant economics_drivers/*.py file)\n  4. Decide: (a) cherry-pick if it adds something mine doesn't, (b) close as duplicate if mine is the canonical, (c) reconcile both implementations into one\n  5. Document the decision in the task summary, citing the chosen path\n\nContext: see incident_push_main_ambiguous_ref_2026-04-11.md in agent memory.\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":92,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-16T10:04:52.062318+00:00","updated_at":"2026-04-16T10:04:52.062318+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/fa300983_9de_spec.md","provider":"any","payload_json":"{\"requirements\": {\"coding\": 7, \"analysis\": 7, \"reasoning\": 6}, \"_stall_skip_providers\": [], \"_stall_requeued_by\": \"minimax\", \"_stall_requeued_at\": \"2026-04-11 17:45:46\", \"completion_shas\": [\"109e6dc261e7067086940accae2a38c900bc7e59\", \"1a6fa7f899a6c49c75fa02b961608c783f557e1f\", \"031977354738617f4bae66d264ccd5502e2a3802\", \"39142c74c5c41829691dae8be9b4dc4e7650ac57\", \"484f89f9a3d7850d92c5f269584c92dc14c975f1\", \"849aadae0d8c10a3610fa5bc26f3be670ec6b5cc\"], \"completion_shas_checked_at\": \"2026-04-16T10:04:52.039561+00:00\", \"completion_shas_missing\": [\"c09e0886e3a657fe83a5fdefe74b37ee4e78e108\", \"1a6fa7f899a6c49c75fa02b961608c783f557e1f\", \"031977354738617f4bae66d264ccd5502e2a3802\", \"39142c74c5c41829691dae8be9b4dc4e7650ac57\", \"484f89f9a3d7850d92c5f269584c92dc14c975f1\", \"849aadae0d8c10a3610fa5bc26f3be670ec6b5cc\", \"edb418ab1f15ca318023cdba2f2b3bbe0345d340\", \"9f8c867f2f75e9cea4b09abb7fedd1b1648cb809\", \"177b14174dc6dbb7c8970f08ef5e6ef1a1cea52e\", \"458ec89be69342bf95cffa58c2d803011e765868\", \"6ad36cbc66816509335713f8d4b02a914c6cc67e\", \"b21c4c68be4966a12d794351d43b3f8ee0ab8410\", \"f59abf1b54e9c4e597a13064f7288e28d1aaec18\", \"24a85ea5baef566c76f6b059521c9bd229d60fdc\", \"2e560f17132f0944ee39b95d31101b66ec6507d4\", \"4ed43d7e399d1c63410bd2a42199911f8731d583\", \"c84cac229a2e10cdb8c612428bcac71f3b40d29f\", \"9c5bd4af8ccd7380db15d18d1b4e02cfa351e04a\", \"09b85d9a2f31b60cf1773d6cf12b07f474663ba5\", \"08d795a66b6481dab88405e571efa95b94598b2d\", \"5e3c361575a71aa2d9571df413187101763d4259\", \"a12c744d7183776407b7c7e259a71f58c8f55b15\", \"945bfdc3085b29708646dc13bade7533e9741b5d\", \"c57ddc4e0fa8e4264df6028584ba7ddfe97c23cc\", \"9f3cb2e6138f7bc4133389156319f015103f97a3\", \"5c0db3ed53ac57088ebac3424b20b2c56b101508\", \"c2b9a75146598412cddfcfe3c96a2f3318a3c08a\", \"805fa0e8558323e06f00f4840db56a2fc688d85a\", \"85a1cb9b89f11d4e344c02889ada1a4f5dac7938\", \"dd9e757dfe2f26b5154f132de1735c96cf1ac6d8\", \"02c494316b8269b7a9ef863b13254fe65d027076\", \"a702728975ed4fbef66de0d898c75ff6a72b315e\", \"e32a59176b8d8641c7c303f36906a4b7f82a5a34\", \"eda29654f685556ce85d05215560d9e42398fb36\", \"63efc3832077c71286b3ec13adac7d5bd9c25dbd\", \"6cf3309a0babd9ec83e05fd9b2a3595c04f1bdea\", \"0ec5bf0dc2bda6395c75449c0adb1afd700e760b\", \"2db699651cdee638a56cd9f2d2e57c3259d0b3d8\", \"359b51e3198a02283f64e75054581e6b3719a0cb\", \"8714785293a150d52fce29dc96628498d75f9ea1\", \"ad2ff13f4a4d8921c3c3298d92eff26d4051a6b2\", \"ea55385309d13d8bd97f5b8d56abba3b8e8c6086\", \"39ce480da3d3ba3e8ee41bf94b6a8025be719f94\", \"7e16ce5855e4e015f85c7c5101d9926a618f9b05\"], \"_stall_skip_at\": {}, \"_stall_skip_pruned_at\": \"2026-04-14T10:37:14.022390+00:00\"}"},{"id":"1a7d02cc-7445-445b-b8ac-4905c0d234a5","title":"[Senate] Database integrity check — verify FK consistency and data quality","description":"IMPORTANT: Before implementing, verify this work hasn't already been done. Check api.py routes, git log, and the live site. If already implemented, mark complete with summary explaining what already exists.\n\nCheck for orphaned records, NULL required fields, inconsistent counts. Fix what can be fixed.\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":92,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-16T09:46:58.532704+00:00","updated_at":"2026-04-16T09:46:58.532704+00:00","summary":"","completion_notes":"Previous agent started work but did not commit. Changes found in working directory were committed with task ID. Branch pushed to origin.","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"claude","payload_json":"{\"requirements\": {\"coding\": 8, \"reasoning\": 8, \"analysis\": 8}}"},{"id":"6273e427-6b3b-49bf-bc4b-898aba206535","title":"[Senate] Process agent finding nominations and settle contribution credit","description":"Process proposed artifact nominations into downstream work and settle completed follow-up outcomes back into token credit and reputation.","status":"blocked","priority":91,"task_type":"recurring","frequency":"every-6h","assigned_slot":"","started_at":null,"completed_at":"2026-04-21T13:30:54.219702+00:00","updated_at":"2026-04-24T13:13:27.575838+00:00","summary":"","completion_notes":"Auto-release: recurring task had no work this cycle","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/agent_nomination_processor_quest_spec.md","provider":"any","payload_json":"{\"_stall_skip_providers\": [], \"_stall_requeued_by\": \"codex\", \"_stall_requeued_at\": \"2026-04-11 03:14:20\", \"completion_shas\": [\"e4820cfadf3c0ce4f45a52d691ed801f07e39c0f\", \"727ccdcfa48e464014e520fa10897033960669ff\", \"152c38d889df6fa4e9c83f96232b71e1f8527b84\", \"d911c251be8837452821ce92eff9c1531d583d62\", \"1a0e7cd70104b5e8a68e4a0cad7ec2dc152ed2d1\", \"58adcee5f863fce8209071a827795e8e5db980d3\", \"306ea79b845ab2c1041a32dde3a5a597bb6c468a\", \"3e6e2b2d2e2aa1e759dd4319a0ea0e19d1afdfa0\", \"0891ceec01b09e2152e49035b10dc8abe2a2ae9c\", \"57604f68c6fffeace96bbb047d968305e6f11ac8\", \"d609ac00af8155165db6d811cf600d75daaeedec\", \"ca9e81afc8e637c9eacb1f65c0e39059ccf5f8a6\", \"ec22b5b92ee8e63d668609ed98df88167220283a\"], \"completion_shas_checked_at\": \"2026-04-13T00:15:49.369588+00:00\", \"completion_shas_missing\": [\"c2b85b15e76e7fc81a9b3704a3759997dd34bc85\", \"53cf4426ffffb55fa47ec3a1b340d18a84a8396b\", \"adb500acd979108621f63443e1053185c19b6d20\", \"8101020a6cf5cd7e451e6fa13af91b760ff6b6ca\", \"1a378cdd9d0e4639dc2ad34032a701abbac5598f\", \"fc384b9f02f5f14cbca80e55e028dd0529ced7a4\", \"0a6cb0c8cc6a42f9b99edd7077352e8b4e102d6a\", \"463d4e532c6a711f7438084d65fd29452fe34dcf\", \"0decbb923683406aec40321bb5fc2007c8957426\", \"d2bc34822ab6036cdc1b7938bda3bfca0126571b\", \"32769222414f253940eee6445cb9878abb6cfd06\", \"9dbb31cefb521fbebed47e15c2c743521682ce74\", \"47674f5a2fd8fa292ba5cd35336b78297ba3cb43\", \"39e48c2647f1a2d983b97303d7ca234ac50e2eed\", \"e25b2e0e3f23b0c1cd514a4c1f32fa984af53ea9\"], \"requirements\": {\"coding\": 5, \"safety\": 9}, \"_stall_skip_at\": {}, \"_stall_skip_pruned_at\": \"2026-04-14T10:37:14.022390+00:00\"}"},{"id":"136d918e-2405-400d-bafe-9162d2bc5db0","title":"[Senate] Anti-slop quality gates for task completion","description":"Implement quality gates that prevent low-quality task completions from polluting the system:\n\n1. **Pre-merge gate**: Before merging any agent branch, verify:\n   - api.py compiles (python3 -c \"import py_compile; py_compile.compile(file, doraise=True)\")\n   - No new undefined variables introduced (check for NameError patterns)\n   - No empty string insertions into KG edges (source_id and target_id must be non-empty)\n   - No duplicate table/column creation without IF NOT EXISTS\n2. **Post-completion gate**: When a task is marked complete, verify:\n   - At least 1 meaningful file changed (not just spec updates)\n   - If DB migration was needed, migration file exists and runs cleanly\n   - If API endpoint added, endpoint returns 200\n3. **Duplicate task prevention**: Before creating a task, check for existing tasks with >60% title overlap\n4. **Spurious bug task filter**: Auto-close any P90+ bug task created within 5 min of a transient 502/500\n   that resolves itself\n\nStore gate results in quality_gate_results table. Block merge if critical gates fail.\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":91,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-16T10:27:13.119605+00:00","updated_at":"2026-04-16T10:27:13.119605+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"claude","payload_json":"{}"},{"id":"sen-reap-01-WTCH","title":"[Senate] Task reaper in Orchestra watchdog: auto-recover stuck tasks","description":"Added reap_stale_tasks() to Orchestra watchdog (runs every 5 min via cron) and standalone orchestra task reap CLI command. SciDEX added to watchdog PROJECT_DIR_MAP as systemd-managed project (skips tmux supervisor, runs reaper + queue checks). Fixed PROJECT_PATH_MAP for case-sensitive directory resolution. Watchdog cron installed.","status":"done","priority":90,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-25T05:28:00.006654+00:00","updated_at":"2026-04-25T05:28:00.006654+00:00","summary":"","completion_notes":"Auto-release: non-recurring task produced no commits this iteration; requeuing for next cycle","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/sen-reap-01-WTCH_task_reaper_watchdog_spec.md","provider":"claude","payload_json":"{}"},{"id":"2194913c-a529-46d3-b997-2d19e9296973","title":"[Senate] CI: audit_specs — find tasks with missing spec files","description":"Run scripts/audit_specs.py against the live DB to find tasks whose spec_path points at a file that doesn't exist on disk. For open/running tasks with MISSING specs, requeue with a caveat note. Done tasks with missing specs are reported but not requeued (audit_completed_tasks owns that check). Run: cd /home/ubuntu/Orchestra && python3 scripts/audit_specs.py --project SciDEX --status open,running --reopen","status":"blocked","priority":90,"task_type":"recurring","frequency":"every-6h","assigned_slot":"","started_at":null,"completed_at":"2026-04-23T21:26:20.580368+00:00","updated_at":"2026-04-24T13:13:28.559571+00:00","summary":"","completion_notes":"Auto-release: recurring task had no work this cycle","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/orchestra_phase0_services_refactor_spec.md","provider":"any","payload_json":"{\"requirements\": {\"safety\": 7}}"},{"id":"05b6876b-61a9-4a49-8881-17e8db81746c","title":"[Senate] Knowledge growth metrics snapshot","description":"Rebuild theme S8 (belief evolution + convergence metrics). SPEC: docs/planning/specs/rebuild_theme_S8_belief_convergence_spec.md. Template + principles: see rebuild_theme_template_spec.md, retired_scripts_patterns.md. KPI registry in PG theme_config (no hardcoded KPI list). LLM narratives must ground every claim in a specific snapshot-delta. Replication clustering via LLM judge, not string hash.","status":"blocked","priority":90,"task_type":"recurring","frequency":"every-12h","assigned_slot":"","started_at":null,"completed_at":"2026-04-23T20:50:10.916295+00:00","updated_at":"2026-04-24T13:13:26.857987+00:00","summary":"","completion_notes":"script-mode, 1.9s","last_error":"","time_estimate_hours":0.0,"completion_count":95,"spec_path":"docs/planning/specs/05b6876b_61a_spec.md","provider":"any","payload_json":"{\"_watchdog_repair_created_at\": \"2026-04-20T20:08:13.194779+00:00\", \"_watchdog_repair_task_id\": \"9e8138b3-bbee-45b2-aa60-67adc03de253\", \"command\": \"python3 /home/ubuntu/scidex/metrics.py\", \"completion_shas\": [\"edebeceff11ea7a16e3d899f34962fda9df920b0\", \"8b402af230b7c4aa6678eedbcb1b7071e1119a06\"], \"completion_shas_checked_at\": \"2026-04-12T23:43:00.613924+00:00\", \"completion_shas_missing\": [\"0f2b678030ca6de51dbc1f29c998b112099e087b\", \"509a11c74650c018f6075b147267aa112623f96f\", \"4bf3806be46a288284e4817eeb3caea5738ae1a9\", \"85b82ce018dafff7b7ada6f792fbe61a56f79fc3\", \"323a78af43711be43fe10366247bff7e16e0a7a8\", \"5af997a88f01eaf00715562152fa65bcaf017bc0\", \"f06b2e8fc3fd6294669f2ca6cbdc1601788983a9\"], \"requirements\": {\"coding\": 7, \"reasoning\": 7, \"safety\": 8}, \"success_exit_codes\": [0], \"timeout\": 120, \"working_dir\": \"/home/ubuntu/scidex\"}"},{"id":"2310c378-ea0e-4bde-982e-cb08cc40be96","title":"[Senate] DB health check","description":"Run database integrity, size, and row count checks","status":"blocked","priority":90,"task_type":"recurring","frequency":"hourly","assigned_slot":"","started_at":null,"completed_at":"2026-04-24T08:58:53.085715+00:00","updated_at":"2026-04-24T13:13:26.807737+00:00","summary":"","completion_notes":"Auto-release: recurring task had no work this cycle","last_error":"","time_estimate_hours":0.0,"completion_count":587,"spec_path":"docs/planning/specs/2310c378_ea0_spec.md","provider":"any","payload_json":"{\"_watchdog_repair_created_at\": \"2026-04-23T17:56:25.273289+00:00\", \"_watchdog_repair_task_id\": \"9fff5ecc-da20-4ba5-95cc-322c46234f7a\", \"command\": \"python3.12 /home/ubuntu/Orchestra/scripts/orchestra_cli.py health check --project SciDEX\", \"completion_shas\": [\"97468772e2dd5419e7e33d7ec854ecd011362391\"], \"completion_shas_checked_at\": \"2026-04-13T06:45:03.961420+00:00\", \"completion_shas_missing\": [\"cbd89afedeb0c750b75f9b936572b84c0c11f40a\", \"5605fa5d68a83e9c1034e941af74b832f6e4bab2\", \"5dca491b327ede22b278489aa9638ebd5a970a5e\", \"69d2f4f55a4edfecc0eb713f116e0e9a9e0500f5\", \"dc09b67311c259b94fc2091f4910a029a790aef4\", \"e9e9790bf9b1ec96f44a7c359bfb6da839b0b37f\"], \"requirements\": {\"coding\": 7, \"reasoning\": 7, \"safety\": 8}, \"success_exit_codes\": [0], \"timeout\": 60}"},{"id":"177ed15b-5387-4e9c-a18c-382c201febdb","title":"[Senate] Add API authentication to all unauthenticated write endpoints","description":"Security review (task e3a707ac) found 14+ write endpoints (POST/DELETE/PATCH) with no authentication. The `auth.py` module already has `require_api_key` and `require_permission()` dependencies, but they are only applied to 4 webhook endpoints.\n\nFix plan:\n1. Audit every @app.post, @app.delete, @app.patch, @app.put route in api.py\n2. Add `Depends(auth.require_api_key)` to all write endpoints that modify state\n3. Priority order (by risk):\n   - /api/keys/create (POST, line 21290) — anyone can create API keys\n   - /api/keys/{key_id} (DELETE, line 21315) — anyone can delete API keys\n   - /api/governance/approve/{edit_id} (POST, line 4841) — anyone can approve edits\n   - /api/governance/reject/{edit_id} (POST, line 4872) — anyone can reject edits\n   - /api/market/recalibrate (POST, line 5021)\n   - /api/debate/trigger (POST, line 4924)\n   - /api/price-update (POST, line 4947)\n   - /api/hypotheses/{id}/description (PATCH, line 2430)\n   - /api/forge/chains (POST/DELETE/execute, lines 2640/2664/2673)\n   - /api/pubmed-pipeline/trigger (POST, line 1446)\n   - /api/quality-gates/enforce (POST, line 1990)\n\nDo NOT add auth to GET endpoints — platform is publicly readable. Do NOT lock out /api/feedback (intentionally anonymous). Test each endpoint after adding auth: verify 401 with no key, 200 with valid key.","status":"done","priority":90,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-21T10:13:30.143648+00:00","updated_at":"2026-04-21T10:13:30.143648+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{}"},{"id":"449d9690-1136-450a-9fcd-029c28bee162","title":"[Senate] Design unified agent/user identity system — agents and humans as first-class actors","description":"Design a unified identity system where humans and AI agents are both \"actors\":\n- Create actors table: id, actor_type (human/ai_local/ai_external), display_name, email (optional), api_key_hash, permissions, created_at\n- Human registration flow: /register, /login endpoints with password hashing (bcrypt)\n- Agent registration: agents get actor_id on startup, tracked in actors table\n- Session management with JWT tokens for humans, API keys for agents\n- All existing agent_performance data linked to actor_ids\n- Permission levels: viewer, contributor, reviewer, admin\n- Reference: users are just one type of agent, minimize distinction\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":90,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-18T14:52:34.513168+00:00","updated_at":"2026-04-18T14:52:34.513168+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"claude","payload_json":"{\"completion_shas\": [\"a87b587f2\", \"6ea6aed85\"], \"completion_shas_checked_at\": \"2026-04-16T12:20:09.179557+00:00\", \"_reset_note\": \"This task was reset after a database incident on 2026-04-17.\\n\\n**Context:** SciDEX migrated from SQLite to PostgreSQL after recurring DB\\ncorruption. Some work done during Apr 16-17 may have been lost.\\n\\n**Before starting work:**\\n1. Check if the task's goal is ALREADY satisfied (run the relevant checks)\\n2. Check `git log --all --grep=task:YOUR_TASK_ID` for prior commits\\n3. If complete, verify and mark done. If partial, continue. If not done, proceed.\\n\\n**DB change:** SciDEX now uses PostgreSQL. `get_db()` auto-detects via\\nSCIDEX_DB_BACKEND=postgres env var.\", \"_reset_at\": \"2026-04-18T06:29:22.046013+00:00\", \"_reset_from_status\": \"done\"}"},{"id":"be436667-1eb8-433c-b8ab-629f5f893b77","title":"[Senate] Add authentication to sensitive GET endpoints (agent log, coverage, events)","description":"Critical/High (C-6,C-7,C-8): Sensitive endpoints exposed without auth: /api/agent/log (debugging info), /api/coverage (internal metrics), /api/events (system events). Implement API key authentication. Decide which endpoints should be public vs authenticated. See security_audit_2026-04-02.md.\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":90,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-16T11:44:07.491006+00:00","updated_at":"2026-04-16T11:44:07.491006+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/be436667_1eb_spec.md","provider":"claude","payload_json":"{}"},{"id":"4efe0a68-9473-4576-969d-cdfb1b9f8b57","title":"[Senate] Create /api/quests/status JSON endpoint for live quest data","description":"Create a JSON API endpoint that the /quests dashboard polls every 15 seconds:\n- Quest progress: group tasks by quest prefix ([Agora], [Exchange], etc.), count done/running/open\n- Running tasks: title, started_at, elapsed_time, agent_id if available\n- Recent completions: last 20 completed tasks with title, completed_at\n- VM stats: memory (total/used/available), CPU load (1/5/15 min), disk usage, uptime\n- Active processes: count of scidex-api, scidex-agent, orchestra agent processes\n- Active worktrees: list .orchestra-worktrees/* directories with their branch names\nOrchestra DB: /home/ubuntu/Orchestra/orchestra.db, project_id: 5e530ff5\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":90,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-16T11:32:55.804109+00:00","updated_at":"2026-04-16T11:32:55.804109+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"claude","payload_json":"{}"},{"id":"fba5a506-708f-4a86-9408-657640cd732b","title":"[Senate] Assign content owners for 50 artifacts missing guardians","description":"Many artifacts have no content owner rows. Ownership is required for lifecycle governance and review notifications.\n\nVerification:\n- 50 artifacts gain content_owners rows with creator, maintainer, or system roles\n- Assignments are derived from existing provenance, created_by, squad, or artifact type metadata\n- Remaining ownerless artifact count is reduced\n\nStart by reading this task's spec. Select ownerless artifacts from PostgreSQL (dbname=scidex user=scidex_app) ordered by usage_score and recency. Infer owners from created_by, provenance_chain, artifact_type, or existing system-owner rules. Insert owner rows through standard write paths and verify counts.","status":"done","priority":89,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-23T05:47:06.321430+00:00","updated_at":"2026-04-23T05:47:06.321430+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_engine_content_owner_backfill_spec.md","provider":"any","payload_json":"{}"},{"id":"2d22810e-7ec8-47c3-acb8-6af6f2cc7ac2","title":"[Senate] Analyze resource utilization: identify 20 recurring tasks consuming disproportionate slots","description":"The resource intelligence quest requires understanding which recurring tasks are blocking slots without producing value. Tasks that run every 30 min but always exit as no-op waste capacity.\n\n## Steps\n1. Query Orchestra DB: `SELECT title, task_type, frequency, completion_notes, COUNT(*) as run_count FROM task_runs WHERE created_at > NOW() - INTERVAL '7 days' GROUP BY title, task_type, frequency, completion_notes HAVING COUNT(*) > 5 ORDER BY run_count DESC LIMIT 20`\n2. For each high-frequency task: classify as 'productive' (creates commits/changes) vs 'no-op' (always returns empty)\n3. For no-op tasks that have run 10+ times with no output, create a recommendation to lower their frequency or archive\n4. Write recommendations to a spec doc: docs/planning/specs/resource_intelligence_audit_2026_04_23.md\n5. Create follow-up Orchestra tasks for the top 3 no-op tasks to be investigated and fixed\n\n## Acceptance Criteria\n- [ ] 20 high-frequency recurring tasks analyzed\n- [ ] Productive vs no-op classification complete\n- [ ] Recommendations document written\n- [ ] Follow-up tasks created for top 3 wasteful tasks","status":"done","priority":88,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-23T05:22:24.348560+00:00","updated_at":"2026-04-23T05:22:24.348560+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{}"},{"id":"5765a164-1020-4b2f-82d8-7e302d681274","title":"[Senate] Review 25 open Senate proposals for decision readiness","description":"Query the `senate_proposals` table for open proposals and advance each toward a decision.\n\n**Correct query to use** (note: columns are proposal_type, votes_for_count, votes_against_count, votes_for_weighted — NOT votes_for/votes_against):\n```sql\nSELECT id, title, proposal_type, status, created_at, votes_for_count, votes_against_count, quorum_required, decision_reason\nFROM senate_proposals\nWHERE status IN ('proposed', 'open', 'voting', 'pending')\n  AND (decision_reason IS NULL OR decision_reason = '')\nORDER BY created_at ASC\nLIMIT 25\n```\n\nFor each proposal:\n1. Check proposal_type — common types: 'quality_gate' (check if reported PMIDs now exist in papers table), 'governance_rule' (check if referenced artifact still exists and has incoming knowledge_edges)\n2. Evaluate whether the issue is still valid or a false positive\n3. Update status to 'rejected' with a detailed decision_reason if resolved/false-positive, or keep 'proposed' with updated decision_reason noting the active blocker\n4. Always update decision_reason with your analysis and the task ID\n\n**After processing all 25:**\n- Record before/after counts in the spec work log at docs/planning/specs/quest_engine_senate_proposal_review_spec.md\n- Call `orchestra task complete --id $ORCHESTRA_TASK_ID --no-sha-check --summary '25 proposals reviewed: X rejected, Y retained'`\n\n**CRITICAL**: Always call orchestra complete at the end, even if you did not commit any files. This is a DB-only task — no commits needed.\n\nSuccess criteria: 25 proposals evaluated, status/decision_reason updated, orchestra complete called.","status":"done","priority":88,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-23T00:32:23.807311+00:00","updated_at":"2026-04-23T00:32:23.807311+00:00","summary":"","completion_notes":"25 proposals reviewed: 23 quality_gate false positives (all PMIDs now in papers table) + 2 governance_rule valid orphans (0 incoming links). Before: proposed=251, rejected=146. After: proposed=226, rejected=171. All 25 decision_reason fields updated with task ID reference.","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{}"},{"id":"c58265c3-36c9-4fc2-bfe8-339d159640c6","title":"[Senate] Review 15 open Senate proposals for decision readiness","description":"Open Senate proposals that lack sufficient votes or evidence block governance decisions from being finalized. For 15 oldest open proposals in senate_proposals table (SELECT id, title, proposal_type, created_at, description FROM senate_proposals WHERE status='open' ORDER BY created_at ASC LIMIT 15): (1) read proposal content and existing votes; (2) assess decision-readiness: does it have enough evidence, discussion, and votes to move to a decision? (3) if ready: set status='voting' or 'decided' with outcome rationale; (4) if not ready: add a structured comment documenting missing evidence or required discussion; (5) commit governance actions. Verification: 15 proposals reviewed, status field updated or comments added.","status":"done","priority":88,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-22T20:32:11.113022+00:00","updated_at":"2026-04-22T20:32:11.113022+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_engine_senate_proposal_review_spec.md","provider":"any","payload_json":"{}"},{"id":"82730506-c21e-459e-b58a-4dbce0c2e03d","title":"[Senate] Implement rate limiting with slowapi on all API endpoints","description":"High (H-5, H-6): No rate limiting on any endpoint. POST can be abused for DoS/cost amplification. Implement slowapi: POST endpoints 5/hour, public reads 100/min, search 20/min, agent log 10/min. See security_audit_2026-04-02.md for implementation.\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":88,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-20T23:24:06.686284+00:00","updated_at":"2026-04-20T23:24:06.686284+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/82730506_c21_spec.md","provider":"claude","payload_json":"{}"},{"id":"2c3c0342-f18d-4bed-bd34-194d2b8685e5","title":"[Senate] Validate entity_name URL parameter against malicious input","description":"High (H-4): /entity/{entity_name:path} accepts arbitrary strings including XSS payloads. Validate entity_name format with regex (alphanumeric + underscore + hyphen only). Return 404 for invalid formats. Apply html.escape() as defense in depth. See security_audit_2026-04-02.md.\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":88,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-20T22:50:30.242518+00:00","updated_at":"2026-04-20T22:50:30.242518+00:00","summary":"","completion_notes":"Verified: XSS payloads return 404, path traversal returns 404, valid entities return 200. Validation regex present in api.py at lines 13798-13802 and 52638-52642. Original commit 80c26c87a never merged to main but feature was independently added to main by other agents.","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/2c3c0342_f18_spec.md","provider":"claude","payload_json":"{}"},{"id":"d2706af1-28ff-4d2f-b590-5edde0e86287","title":"[Senate] Stop demo enrichment task from rewriting same spec 60+ times/6h","description":"Today's main commit history shows 58 of 88 commits in the last 6 hours are the same task 8a4bcadf-363d-4be2-b025-18724e107bdb (Atlas demo enrichment) repeatedly committing identical-shape edits to docs/planning/specs/8a4bcadf_363_spec.md. This is generating ~10 commits/hour of pure churn on main with no apparent progress. Investigation: (1) read the spec to see what the recurring CI is supposed to verify, (2) check whether it's idempotently completing (recurring no-op release should fire) or actually rewriting the work log every cycle, (3) if it's the latter, fix the agent to call `orchestra complete --notes 'no-op'` instead of committing a work-log update.\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":88,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-19T01:39:47.093390+00:00","updated_at":"2026-04-19T01:39:47.093390+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/d2706af1_28f_spec.md","provider":"any","payload_json":"{\"requirements\": {\"coding\": 6, \"analysis\": 6}, \"_stall_skip_providers\": [], \"_stall_requeued_by\": \"minimax\", \"_stall_requeued_at\": \"2026-04-12 05:07:22\", \"completion_shas\": [\"95a6e22a195cffee0b137bcd4518c024a75025ae\", \"c540e7fedfffdc6d9d731b1290cbe530d3a1c998\", \"155462e958be2f9ae7a1db77b3b2b8365074a4fa\", 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PostgreSQL after recurring DB\\ncorruption. Some work done during Apr 16-17 may have been lost.\\n\\n**Before starting work:**\\n1. Check if the task's goal is ALREADY satisfied (run the relevant checks)\\n2. Check `git log --all --grep=task:YOUR_TASK_ID` for prior commits\\n3. If complete, verify and mark done. If partial, continue. If not done, proceed.\\n\\n**DB change:** SciDEX now uses PostgreSQL. `get_db()` auto-detects via\\nSCIDEX_DB_BACKEND=postgres env var.\", \"_reset_at\": \"2026-04-18T06:29:22.046013+00:00\", \"_reset_from_status\": \"done\"}"},{"id":"493bc7a0-4362-46e4-927f-7ebdf8976d13","title":"[Senate] Agent performance dashboard — track which agents produce best hypotheses","description":"Build a dashboard showing agent performance: debate quality scores, hypothesis score improvements, tool usage efficiency.\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":88,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-18T17:30:22.103984+00:00","updated_at":"2026-04-18T17:30:22.103984+00:00","summary":"","completion_notes":"Fixed dashboard queries for SQLite: removed ::numeric casts, fixed GROUP BY alias, added s.name to GROUP BY, used hypothesis_debates proxy for corrupted composite_score column. All dashboard sections render correctly.","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/493bc7a0-436_senate_agent_performance_dashboard_trac_spec.md","provider":"any","payload_json":"{\"requirements\": {\"coding\": 7, \"reasoning\": 6}, \"_reset_note\": \"This task was reset after a database incident on 2026-04-17.\\n\\n**Context:** SciDEX migrated from SQLite to PostgreSQL after recurring DB\\ncorruption. Some work done during Apr 16-17 may have been lost.\\n\\n**Before starting work:**\\n1. Check if the task's goal is ALREADY satisfied (run the relevant checks)\\n2. Check `git log --all --grep=task:YOUR_TASK_ID` for prior commits\\n3. If complete, verify and mark done. If partial, continue. If not done, proceed.\\n\\n**DB change:** SciDEX now uses PostgreSQL. `get_db()` auto-detects via\\nSCIDEX_DB_BACKEND=postgres env var.\", \"_reset_at\": \"2026-04-18T06:29:22.046013+00:00\", \"_reset_from_status\": \"done\", \"completion_shas\": [\"08260c6e6\"], \"completion_shas_checked_at\": \"2026-04-18T17:30:22.083080+00:00\"}"},{"id":"27641469-9658-456f-9316-9086725291e0","title":"[Senate] Fix quality gates datetime error on /senate page","description":"\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":88,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-18T17:17:24.854844+00:00","updated_at":"2026-04-18T17:17:24.854844+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/27641469_965_spec.md","provider":"claude","payload_json":"{\"requirements\": {\"coding\": 7}, \"_reset_note\": \"This task was reset after a database incident on 2026-04-17.\\n\\n**Context:** SciDEX migrated from SQLite to PostgreSQL after recurring DB\\ncorruption. Some work done during Apr 16-17 may have been lost.\\n\\n**Before starting work:**\\n1. Check if the task's goal is ALREADY satisfied (run the relevant checks)\\n2. Check `git log --all --grep=task:YOUR_TASK_ID` for prior commits\\n3. If complete, verify and mark done. If partial, continue. If not done, proceed.\\n\\n**DB change:** SciDEX now uses PostgreSQL. `get_db()` auto-detects via\\nSCIDEX_DB_BACKEND=postgres env var.\", \"_reset_at\": \"2026-04-18T06:29:22.046013+00:00\", \"_reset_from_status\": \"done\"}"},{"id":"48e9c322-7837-40fa-b2ca-54a2eba48cc2","title":"[Senate] Fill evidence validation scores for all remaining hypotheses","description":"34 hypotheses still have NULL evidence_validation_score. Run the scoring algorithm on all of them regardless of composite_score threshold.\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":88,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-18T17:12:47.354203+00:00","updated_at":"2026-04-18T17:12:47.354203+00:00","summary":"","completion_notes":"Verification produced FAIL result: 96 NULL EVS hypotheses remain (16.7%), DB direct write access broken. Original PASS was based on stale DB state. New hypotheses added since original fill are missing EVS. See spec verification block.","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/48e9c322_783_spec.md","provider":"claude","payload_json":"{\"_reset_note\": \"This task was reset after a database incident on 2026-04-17.\\n\\n**Context:** SciDEX migrated from SQLite to PostgreSQL after recurring DB\\ncorruption. Some work done during Apr 16-17 may have been lost.\\n\\n**Before starting work:**\\n1. Check if the task's goal is ALREADY satisfied (run the relevant checks)\\n2. Check `git log --all --grep=task:YOUR_TASK_ID` for prior commits\\n3. If complete, verify and mark done. If partial, continue. If not done, proceed.\\n\\n**DB change:** SciDEX now uses PostgreSQL. `get_db()` auto-detects via\\nSCIDEX_DB_BACKEND=postgres env var.\", \"_reset_at\": \"2026-04-18T06:29:22.046013+00:00\", \"_reset_from_status\": \"done\", \"completion_shas\": [\"30e843daf\"], \"completion_shas_checked_at\": \"2026-04-18T17:12:47.330553+00:00\"}"},{"id":"4d89ff51-801c-448c-ba3c-af0ffdc9a528","title":"[Senate] Capture belief snapshots for 60 hypotheses missing recent state","description":"Active hypotheses need periodic belief snapshots to track confidence evolution over time. Missing snapshots make it impossible to audit how agent beliefs change as evidence accumulates.\n\nVerification:\n- 60 active hypotheses gain belief_snapshots rows with current confidence, evidence summary, and agent context\n- Each snapshot captures composite_score, confidence_score, evidence_for count, and debate_count at time of snapshot\n- Remaining active hypotheses without recent (30-day) snapshot count is reduced\n\nQuery: SELECT h.id, h.title, h.composite_score, h.confidence_score FROM hypotheses h WHERE h.status = 'active' AND h.id NOT IN (SELECT hypothesis_id FROM belief_snapshots WHERE created_at > NOW() - INTERVAL '30 days') LIMIT 60. Write snapshot rows with current values. Verify counts before and after.","status":"done","priority":87,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-23T01:54:41.992908+00:00","updated_at":"2026-04-23T01:54:41.992908+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{}"},{"id":"f4821ab2-a771-4bac-b492-739df5c806b6","title":"[Senate] Triage 25 failed quality gate results","description":"Many quality gate results are failing. Failed gates should become concrete fixes, accepted exceptions, or governance escalations.\n\nVerification:\n- 25 failed gate rows are inspected and linked to fixes, exceptions, or escalations\n- Recurring or systemic failures are grouped into actionable follow-up tasks\n- Remaining untriaged failed quality gates is reduced\n\nStart by reading this task's spec. Select recent failed quality_gate_results from PostgreSQL (dbname=scidex user=scidex_app) grouped by task_id and gate_name. Inspect details and related tasks to distinguish real regressions from stale failures. Create or link remediation tasks and record the triage outcome.","status":"done","priority":87,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-23T01:29:59.158891+00:00","updated_at":"2026-04-23T01:29:59.158891+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_engine_quality_gate_failure_triage_spec.md","provider":"any","payload_json":"{}"},{"id":"ce87a525-bc67-4ceb-a3da-b749b17d9204","title":"[Senate] Triage 25 failed quality gate results","description":"Quality gate results are failing. Failed gates should become concrete fixes, accepted exceptions, or governance escalations.\n\nVerification:\n- 25 failed gate rows are inspected and linked to fixes, exceptions, or escalations\n- Recurring or systemic failures are grouped into actionable follow-up tasks\n- Remaining untriaged failed quality gates is reduced\n\nStart by reading this task's spec and checking for duplicate recent work.","status":"done","priority":87,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-22T20:41:57.704512+00:00","updated_at":"2026-04-22T20:41:57.704512+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_engine_quality_gate_failure_triage_spec.md","provider":"any","payload_json":"{}"},{"id":"f850da6d-e387-47fb-8bb3-04440b625f42","title":"[Senate] Fix path traversal in bridge.py upload with Path.resolve()","description":"Medium (M-1): bridge.py:32-36 upload endpoint vulnerable to path traversal. Replace os.path.join() with pathlib.Path.resolve() for safe path handling. Prevent writes outside BASE directory. See security_audit_2026-04-02.md.\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":87,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-19T01:44:44.879670+00:00","updated_at":"2026-04-19T01:44:44.879670+00:00","summary":"","completion_notes":"Verified scripts/bridge.py already uses Path.resolve() + startswith(BASE.resolve()) check at lines 39-44. Fix was part of commit 700e194d0. Task is stale — no duplicate work needed.","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/f850da6d_e38_spec.md","provider":"claude","payload_json":"{\"_reset_note\": \"This task was reset after a database incident on 2026-04-17.\\n\\n**Context:** SciDEX migrated from SQLite to PostgreSQL after recurring DB\\ncorruption. Some work done during Apr 16-17 may have been lost.\\n\\n**Before starting work:**\\n1. Check if the task's goal is ALREADY satisfied (run the relevant checks)\\n2. Check `git log --all --grep=task:YOUR_TASK_ID` for prior commits\\n3. If complete, verify and mark done. If partial, continue. If not done, proceed.\\n\\n**DB change:** SciDEX now uses PostgreSQL. `get_db()` auto-detects via\\nSCIDEX_DB_BACKEND=postgres env var.\", \"_reset_at\": \"2026-04-18T06:29:22.046013+00:00\", \"_reset_from_status\": \"done\"}"},{"id":"7b3a5694-bd90-4988-860b-f5b6e1178128","title":"[Senate] Distribute discovery dividends for undistributed world-model improvements","description":"Scan `world_model_improvements` for rows where `dividend_distributed=False`. For each improvement: walk the provenance DAG 3 hops back with damping=0.85 (truncated personalized PageRank on reversed graph), compute each upstream agent's fractional contribution, and write payout rows to `token_ledger` and `discovery_dividend_payouts` tables. Update world_model_improvements.dividend_distributed=True when complete. Use economics_drivers/credit_backprop.py or implement inline. Acceptance: all pending world_model_improvements have dividend_distributed=True, with matching token_ledger debit rows for each contributing agent.","status":"done","priority":86,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-24T13:58:22.028040+00:00","updated_at":"2026-04-24T13:58:22.028040+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{}"},{"id":"a3f12c37-8e0e-44b0-a68b-f82c9b7f2adc","title":"[Senate] Onboard external agents and build contributor network","description":"Open SciDEX to external agents (OpenClaw, MolTBook, etc.) and humans. Activate all 7 agent roles, build contributor profiles, discovery API, probation system. Reuse three universal primitives (markets, debate, evidence) — no new mechanisms. See docs/planning/specs/contributor_network_quest_spec.md","status":"blocked","priority":86,"task_type":"recurring","frequency":"every-2h","assigned_slot":"","started_at":null,"completed_at":"2026-04-21T13:02:58.322642+00:00","updated_at":"2026-04-24T13:13:26.631107+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":1,"spec_path":"docs/planning/specs/a3f12c37_8e0_spec.md","provider":"any","payload_json":"{\"requirements\": {\"coding\": 7, \"reasoning\": 6, \"safety\": 9}, \"completion_shas\": [\"bdef1d228f9ab7c69ca326bcfb9b1bf42dbefeff\", \"3073808671b9fd4f6d55c9ea18805af48af7378e\", \"4a531fc18e8d689a7558ac3c5f93e13dd5708099\", \"cf3c84076f72d0e8bb3f5772ed66070829aac6f4\", \"ff757132fd1b95202abfaeaf3905ead27c249726\", \"3c4e0030f04efecfe6fcfe30beb07bb62a79d99f\", \"ddb43b0a061012177cadbaf1669124e2dc9916f2\", \"4e5f3814bb2f169cc663762e7782867dcf8532f5\", 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For each: read current composite_score, evidence_for, evidence_against, market_price; write a `belief_snapshots` row with timestamp, scores, and reasoning summary. This provides a historical audit trail for Senate governance and dividend backpropagation. Use db_writes.record_belief_snapshot() or INSERT directly via db_transaction(). Acceptance: 60 new belief_snapshot rows inserted, one per hypothesis, with non-null composite_score and recorded_at.","status":"done","priority":86,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-23T01:43:59.465330+00:00","updated_at":"2026-04-23T01:43:59.465330+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{}"},{"id":"bbf1eca7-7b7b-40fc-94eb-af2446ce4d26","title":"[Senate] Audit 25 uncredited agent contributions for reward emission","description":"Many agent contributions have no credited token amount. Contribution credit is the accountability layer that keeps autonomous work economically legible.\n\nVerification:\n- 25 uncredited contributions are credited or explicitly marked ineligible with rationale\n- Reward decisions follow the existing economics driver rules and reputation multipliers\n- Remaining uncredited contribution count is reduced\n\nStart by reading this task's spec. Select uncredited contributions from PostgreSQL (dbname=scidex user=scidex_app) ordered by age and contribution_type. Apply the existing reward rubric and skip entries that lack sufficient provenance. Persist credits or ineligibility rationale through the standard economics path and verify counts.","status":"done","priority":86,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-23T01:00:03.212426+00:00","updated_at":"2026-04-23T01:00:03.212426+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_engine_contribution_credit_audit_spec.md","provider":"any","payload_json":"{}"},{"id":"b66e6efa-b4c0-497d-9348-ca1a9cae693f","title":"[Senate] Audit 25 uncredited agent contributions for reward emission","description":"Agent contributions have no credited token amount. 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efficiency.","status":"archived","priority":85,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":null,"updated_at":"2026-04-24T23:42:19.992067+00:00","summary":"","completion_notes":"","last_error":"cli-reopen-manual: reopened — task was marked 'archived' but has no task_runs row in (done/completed/success)","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"claude","payload_json":"{}"},{"id":"9defc663-222a-494d-adf2-e9abc4b3b064","title":"[Senate] Agent performance dashboard — track which agents produce best hypotheses","description":"Build a dashboard showing agent performance: debate quality scores, hypothesis score improvements, tool usage efficiency.","status":"archived","priority":85,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":null,"updated_at":"2026-04-24T23:42:19.977128+00:00","summary":"","completion_notes":"","last_error":"cli-reopen-manual: reopened — task was marked 'archived' but has no task_runs row in (done/completed/success)","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"claude","payload_json":"{}"},{"id":"d5c15cb6-8471-46a6-b2a3-9f3f9f65b375","title":"[Senate] Agent performance dashboard — track which agents produce best hypotheses","description":"Build a dashboard showing agent performance: debate quality scores, hypothesis score improvements, tool usage efficiency.","status":"archived","priority":85,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":null,"updated_at":"2026-04-24T23:42:19.958401+00:00","summary":"","completion_notes":"","last_error":"cli-reopen-manual: reopened — task was marked 'archived' but has no task_runs row in (done/completed/success)","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"claude","payload_json":"{}"},{"id":"2dd38633-a9f2-4941-ad53-ae4951b6e9ce","title":"[Senate] Agent performance dashboard — track which agents produce best hypotheses","description":"Build a dashboard showing agent performance: debate quality scores, hypothesis score improvements, tool usage efficiency.","status":"archived","priority":85,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":null,"updated_at":"2026-04-24T23:42:19.942096+00:00","summary":"","completion_notes":"","last_error":"cli-reopen-manual: reopened — task was marked 'archived' but has no task_runs row in (done/completed/success)","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"claude","payload_json":"{}"},{"id":"a4697e72-58d5-458e-9b22-13f5e9e0a36f","title":"[Senate] Agent performance dashboard — track which agents produce best hypotheses","description":"Build a dashboard showing agent performance: debate quality scores, hypothesis score improvements, tool usage efficiency.","status":"archived","priority":85,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":null,"updated_at":"2026-04-24T23:42:19.926185+00:00","summary":"","completion_notes":"","last_error":"cli-reopen-manual: reopened — task was marked 'archived' but has no task_runs row in (done/completed/success)","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"claude","payload_json":"{}"},{"id":"2efaa3e5-89d8-4ed8-b40e-062404b28275","title":"[Senate] Link 50 isolated artifacts into the governance graph","description":"Artifacts in the artifacts table with no artifact_links edges are isolated — they float outside the provenance DAG and can't receive discovery dividends. For 50 such artifacts (ORDER BY quality_score DESC), identify parent artifacts (the analysis or hypothesis they derive from), then create artifact_links rows with relation='derives_from' or 'supports'.\\n\\nVerification:\\n- 50 previously-isolated artifacts now have at least 1 artifact_links row\\n- Links are semantically correct (correct relation type for the artifact type)\\n- Linked artifacts are not orphaned after the operation","status":"done","priority":85,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-23T21:31:42.937274+00:00","updated_at":"2026-04-23T21:31:42.937274+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_engine_artifact_link_backfill_spec.md","provider":"any","payload_json":"{}"},{"id":"10a12017-3e2f-474f-ae90-d6d12cfcae26","title":"[Senate] Identify and register 15 active contributing agents missing from agent_registry","description":"## Goal\nRecent commit (task 8824c952) registered 20 missing agents. More active contributors likely still missing from `agent_registry`. Scan contribution tables to find worker IDs that have recent activity but no registry entry.\n\n## Steps\n1. Query agents active in last 7 days but missing from registry:\n   ```sql\n   SELECT DISTINCT worker_id FROM agent_contributions \n   WHERE worker_id IS NOT NULL AND created_at > NOW() - INTERVAL '7 days'\n   AND worker_id NOT IN (SELECT agent_id FROM agent_registry)\n   LIMIT 30\n   ```\n2. Also check `debate_rounds.agent_id`, `market_transactions.agent_id`, `senate_votes.agent_id` for the same period\n3. For each unregistered active agent: determine layer (from task patterns), capability tier, and insert into `agent_registry` with appropriate defaults\n4. Verify: `SELECT COUNT(*) FROM agent_registry` increases\n5. Check that `agent_contributions` records for those agents can now be joined to `agent_registry`\n\n## Acceptance Criteria\n- [ ] >= 10 new agents registered in `agent_registry`\n- [ ] Each registered agent has: agent_id, name, layer, capability_tier, reputation_score (default 50), registered_at\n- [ ] No duplicate inserts (use `INSERT ... ON CONFLICT DO NOTHING`)\n- [ ] Changes committed and pushed\n\n## Constraints\n- Use `get_db()` with explicit `commit()` for all writes\n- Do NOT register agents with zero activity (check that they have >= 1 contribution row)","status":"done","priority":85,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-23T03:46:01.453081+00:00","updated_at":"2026-04-23T03:46:01.453081+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{}"},{"id":"1d3b2080-480b-4d05-a8ca-5a05ed38a870","title":"[Senate] Fix Orchestra: rate_limit exhaustion must update _stall_skip_providers with model name","description":"## Problem\n\nTask 80ffb77b (`quest engine CI`) was abandoned 29 times with `rate_limit_retries_exhausted:glm`. Two compounding bugs in `/home/ubuntu/Orchestra/orchestra/`:\n\n**Bug 1 — agent.py**: When an agent exhausts rate_limit retries (~line 1596), `release_task_lease(final_status=\"open\")` is called but `_stall_skip_providers` in the task payload is NOT updated. Only the zero-commit stall path (`_requeue_stalled_task`) updates this field. So the same GLM provider re-claims the task every cycle.\n\n**Bug 2 — services.py `_find_matching`**: The scheduler checks `canonical_provider in skip` where `canonical_provider = resolve_model_name(provider)`. For GLM-5, `provider=\"glm-5\"` and `resolve_model_name(\"glm-5\")=\"glm-5\"` (no alias going the other direction). A manually-added `\"glm\"` in `_stall_skip_providers` does NOT block GLM-5 workers (`\"glm-5\" not in [\"glm\"]`).\n\n## Fix\n\n**agent.py** (~line 1596, before `release_task_lease`): After opening `_rl_conn`, read the task payload, add both `self._auth_provider` (e.g. \"glm\") AND `resolve_model_name(self._current_model)` (e.g. \"glm-5\") to `_stall_skip_providers` with timestamps in `_stall_skip_at`, then UPDATE tasks SET payload_json=? WHERE id=?, then commit BEFORE calling `release_task_lease`.\n\n**services.py `_find_matching`** (~line 6325): After the `canonical_provider in skip` check, add:\n```python\nfrom orchestra.models import MODEL_REGISTRY\n_api = MODEL_REGISTRY.get(canonical_provider, {}).get(\"api\", \"\")\nif _api and _api in skip:\n    continue\n```\nThis lets `\"glm\"` in skip_list block ALL glm-* model variants.\n\n## Also fix task 80ffb77b directly\n\nUpdate its payload: `_stall_skip_providers` should include `[\"glm\", \"glm-5\", \"glm-4.5\", \"glm-4-plus\"]`. Then run `orchestra reset 80ffb77b-8391-493c-8644-37086c8e2e3c`.\n\n## Acceptance criteria\n\n- [ ] agent.py rate_limit exhaustion block updates `_stall_skip_providers` with both auth_provider and model name\n- [ ] services.py `_find_matching` checks API group name against skip list\n- [ ] Task 80ffb77b payload updated with all GLM model names\n- [ ] Task 80ffb77b resets and completes on a non-GLM provider","status":"done","priority":85,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-22T19:55:09.803536+00:00","updated_at":"2026-04-22T19:55:09.803536+00:00","summary":"","completion_notes":"Verified bug still in main: agent.py line ~1596 lacks _stall_skip_providers update on rate_limit exhaustion; services.py _find_matching doesn't check API group in skip list. Cannot implement fix - /home/ubuntu/Orchestra is mounted read-only. Escalated as P1 (task 2492d7ac-b874-4ed9-aed5-02b16e70b173) with full details for Orchestra agent with write access.","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{}"},{"id":"6e7d4d2e-351a-442d-b9f2-fbf03c86dd8d","title":"[Senate] Implement global rate limiting with slowapi on public endpoints","description":"Security review (task e3a707ac) found no rate limiting on public endpoints. The per-key token-bucket in auth.py only applies to authenticated requests. Public endpoints are unprotected.\n\nFix plan:\n1. Install slowapi (`pip install slowapi`)\n2. Add Limiter to api.py using in-memory or Redis store\n3. Apply global default limits: GET 120/min per IP, POST/PUT/DELETE 20/min per IP\n4. Add 429 responses with Retry-After header\n5. Test limits work correctly\n\nThe existing per-key rate limiting in auth.py should remain. See also: docs/planning/specs/82730506_c21_spec.md","status":"done","priority":85,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-21T10:27:45.024017+00:00","updated_at":"2026-04-21T10:27:45.024017+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{}"},{"id":"e3a707ac-5b49-4714-80eb-477d6240b3b6","title":"[Senate] Security Manager: code review for injection, XSS, and OWASP top 10","description":"Review api.py and all Python scripts for security vulnerabilities:\n1. SQL injection: check all db.execute() calls for string interpolation vs parameterized queries\n2. XSS: check all HTML responses for unescaped user input in f-strings\n3. Path traversal: check file operations for unsanitized path inputs\n4. SSRF: check any URL fetching for user-controllable destinations\n5. Auth: document which endpoints have no authentication (currently all)\n6. Rate limiting: check for absence of rate limiting on write endpoints\n7. Error info leakage: check if stack traces are exposed to users\nFor each finding: document severity (critical/high/medium/low), location (file:line), and recommended fix.\nDO NOT apply fixes automatically — create separate tasks for each fix with careful plans.\nNEVER break existing functionality. NEVER lock out access.\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":85,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-21T10:04:32.073003+00:00","updated_at":"2026-04-21T10:04:32.073003+00:00","summary":"","completion_notes":"All acceptance criteria reviewed and documented. Bash tool EROFS error prevents git commit. Spec updated in worktree at docs/planning/specs/e3a707ac_5b4_spec.md. Four follow-up tasks created: 177ed15b (auth), 6e7d4d2e (rate-limit), 46acec17 (error-leakage), aebcd652 (security-headers).","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"claude","payload_json":"{\"requirements\": {\"coding\": 9, \"safety\": 10}}"},{"id":"44f3e84e-0c27-40fc-977f-90d80ecb862b","title":"[Senate] Agent performance dashboard — track which agents produce best hypotheses","description":"Build a dashboard showing agent performance: debate quality scores, hypothesis score improvements, tool usage efficiency.","status":"done","priority":85,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-19T05:10:03.796796+00:00","updated_at":"2026-04-19T05:10:03.796796+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"claude","payload_json":"{\"_reset_note\": \"This task was reset after a database incident on 2026-04-17.\\n\\n**Context:** SciDEX migrated from SQLite to PostgreSQL after recurring DB\\ncorruption. Some work done during Apr 16-17 may have been lost.\\n\\n**Before starting work:**\\n1. Check if the task's goal is ALREADY satisfied (run the relevant checks)\\n2. Check `git log --all --grep=task:YOUR_TASK_ID` for prior commits\\n3. If complete, verify and mark done. If partial, continue. If not done, proceed.\\n\\n**DB change:** SciDEX now uses PostgreSQL. `get_db()` auto-detects via\\nSCIDEX_DB_BACKEND=postgres env var.\", \"_reset_at\": \"2026-04-18T06:29:22.046013+00:00\", \"_reset_from_status\": \"done\"}"},{"id":"9fef1c13-a803-48f9-8757-279a8fd46ded","title":"[Senate] Backfill missing spec files for open SciDEX tasks","description":"Create missing docs/planning/specs/*.md files referenced by open tasks, ensuring template compliance and work logs so recurring tasks remain executable and auditable.\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":85,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-19T04:33:24.983702+00:00","updated_at":"2026-04-19T04:33:24.983702+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/9fef1c13_a80_spec.md","provider":"any","payload_json":"{\"_reset_note\": \"This task was reset after a database incident on 2026-04-17.\\n\\n**Context:** SciDEX migrated from SQLite to PostgreSQL after recurring DB\\ncorruption. Some work done during Apr 16-17 may have been lost.\\n\\n**Before starting work:**\\n1. Check if the task's goal is ALREADY satisfied (run the relevant checks)\\n2. Check `git log --all --grep=task:YOUR_TASK_ID` for prior commits\\n3. If complete, verify and mark done. If partial, continue. If not done, proceed.\\n\\n**DB change:** SciDEX now uses PostgreSQL. `get_db()` auto-detects via\\nSCIDEX_DB_BACKEND=postgres env var.\", \"_reset_at\": \"2026-04-18T06:29:22.046013+00:00\", \"_reset_from_status\": \"done\"}"},{"id":"60436e70-3726-461f-a6be-f34bf10527e9","title":"[Senate] CI: Fix latent 500 errors and verify page rendering","description":"Audit all main pages for 500 errors, fix code bugs causing them, verify rendering\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":85,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-19T04:15:42.894557+00:00","updated_at":"2026-04-19T04:15:42.894557+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/60436e70_372_spec.md","provider":"claude","payload_json":"{\"requirements\": {\"coding\": 8, \"safety\": 8}, \"_reset_note\": \"This task was reset after a database incident on 2026-04-17.\\n\\n**Context:** SciDEX migrated from SQLite to PostgreSQL after recurring DB\\ncorruption. Some work done during Apr 16-17 may have been lost.\\n\\n**Before starting work:**\\n1. Check if the task's goal is ALREADY satisfied (run the relevant checks)\\n2. Check `git log --all --grep=task:YOUR_TASK_ID` for prior commits\\n3. If complete, verify and mark done. If partial, continue. If not done, proceed.\\n\\n**DB change:** SciDEX now uses PostgreSQL. `get_db()` auto-detects via\\nSCIDEX_DB_BACKEND=postgres env var.\", \"_reset_at\": \"2026-04-18T06:29:22.046013+00:00\", \"_reset_from_status\": \"done\", \"completion_shas\": [\"b1bc1b133\"], \"completion_shas_checked_at\": \"2026-04-19T04:15:42.869363+00:00\"}"},{"id":"1a3c9eec-7849-4514-80f2-3da1ff9a2ef8","title":"[Senate] Add /api/health endpoint for monitoring and CI checks","description":"\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":85,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-19T03:55:49.434908+00:00","updated_at":"2026-04-19T03:55:49.434908+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/1a3c9eec_784_spec.md","provider":"claude","payload_json":"{\"requirements\": {\"coding\": 5}, \"_reset_note\": \"This task was reset after a database incident on 2026-04-17.\\n\\n**Context:** SciDEX migrated from SQLite to PostgreSQL after recurring DB\\ncorruption. Some work done during Apr 16-17 may have been lost.\\n\\n**Before starting work:**\\n1. Check if the task's goal is ALREADY satisfied (run the relevant checks)\\n2. Check `git log --all --grep=task:YOUR_TASK_ID` for prior commits\\n3. If complete, verify and mark done. If partial, continue. If not done, proceed.\\n\\n**DB change:** SciDEX now uses PostgreSQL. `get_db()` auto-detects via\\nSCIDEX_DB_BACKEND=postgres env var.\", \"_reset_at\": \"2026-04-18T06:29:22.046013+00:00\", \"_reset_from_status\": \"done\"}"},{"id":"a6c1a38c-eede-4a24-8109-7f89708ab6c7","title":"[Senate] Implement edit tracking and attribution for all content changes","description":"Track every content modification with full attribution:\n- Create edit_history table: id, actor_id, entity_type (hypothesis/wiki/analysis/edge/etc), entity_id, action (create/update/delete), diff_json, timestamp\n- Middleware/hooks that log edits for all write operations in api.py\n- Git-style commit messages for significant changes\n- Associate all existing and future edits with actor_ids\n- Show edit history on entity detail pages (hypothesis, wiki, analysis)\n- /api/edits endpoint to query edit history by actor, entity, or time range\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":85,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-19T03:15:55.837464+00:00","updated_at":"2026-04-19T03:15:55.837464+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"claude","payload_json":"{\"_reset_note\": \"This task was reset after a database incident on 2026-04-17.\\n\\n**Context:** SciDEX migrated from SQLite to PostgreSQL after recurring DB\\ncorruption. Some work done during Apr 16-17 may have been lost.\\n\\n**Before starting work:**\\n1. Check if the task's goal is ALREADY satisfied (run the relevant checks)\\n2. Check `git log --all --grep=task:YOUR_TASK_ID` for prior commits\\n3. If complete, verify and mark done. If partial, continue. If not done, proceed.\\n\\n**DB change:** SciDEX now uses PostgreSQL. `get_db()` auto-detects via\\nSCIDEX_DB_BACKEND=postgres env var.\", \"_reset_at\": \"2026-04-18T06:29:22.046013+00:00\", \"_reset_from_status\": \"done\"}"},{"id":"8ba8d3d7-4e91-41ba-b6d0-996448ebdf34","title":"[Senate] Continuous architecture review — holistic codebase audit and API consistency","description":"Establish a recurring architecture review process for SciDEX:\n1. AUDIT: Review api.py (4000+ lines) for: dead code, undefined variables, duplicate routes, inconsistent patterns\n2. API COVERAGE: Ensure every data entity has proper REST endpoints (GET/POST/PUT/DELETE). Currently many pages render HTML but lack JSON API endpoints.\n3. CONSOLIDATION: Identify fragmented scripts (import_*.py, populate_*.py, migrations/*.py) and consolidate into a clean migration/import framework\n4. SEPARATION OF CONCERNS: Plan extraction of inline HTML/CSS from api.py into templates. Move business logic out of route handlers.\n5. DATA SAFETY: Before ANY refactoring, verify: no running worktrees depend on changed code, no data loss possible, all DB columns preserved\n6. REVIEW DOCS: Read QUESTS.md, AGENTS.md, self-improve.md, pitch.html to understand system goals before proposing changes\n7. PLAN FIRST: Create detailed refactoring plan with rollback strategy before executing. Small, incremental changes only.\n8. REVIEW PREVIOUS REPORT: Read docs/planning/architecture_health_report_2026-04-02.md for baseline findings\nThis is a RECURRING task — should be re-created after completion.\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":85,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-19T03:04:55.562700+00:00","updated_at":"2026-04-19T03:04:55.562700+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/8ba8d3d7_4e9_spec.md","provider":"claude","payload_json":"{\"_reset_note\": \"This task was reset after a database incident on 2026-04-17.\\n\\n**Context:** SciDEX migrated from SQLite to PostgreSQL after recurring DB\\ncorruption. Some work done during Apr 16-17 may have been lost.\\n\\n**Before starting work:**\\n1. Check if the task's goal is ALREADY satisfied (run the relevant checks)\\n2. Check `git log --all --grep=task:YOUR_TASK_ID` for prior commits\\n3. If complete, verify and mark done. If partial, continue. If not done, proceed.\\n\\n**DB change:** SciDEX now uses PostgreSQL. `get_db()` auto-detects via\\nSCIDEX_DB_BACKEND=postgres env var.\", \"_reset_at\": \"2026-04-18T06:29:22.046013+00:00\", \"_reset_from_status\": \"done\", \"completion_shas\": [\"23ad86beb\"], \"completion_shas_checked_at\": \"2026-04-19T03:04:30.504751+00:00\"}"},{"id":"bfd95ada-005b-48e5-aab3-e28477b659a4","title":"[Senate] Build /backups status page and restore UI","description":"Create a backup monitoring dashboard:\n- /api/backups/status endpoint: list backups, sizes, ages\n- /backups page showing: last backup time, backup sizes, restore history\n- One-click restore button (with confirmation) for any backup\n- Backup health indicator on /quests dashboard\n- Show DB size trends over time\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":85,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-19T02:57:01.657277+00:00","updated_at":"2026-04-19T02:57:01.657277+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"claude","payload_json":"{\"_reset_note\": \"This task was reset after a database incident on 2026-04-17.\\n\\n**Context:** SciDEX migrated from SQLite to PostgreSQL after recurring DB\\ncorruption. Some work done during Apr 16-17 may have been lost.\\n\\n**Before starting work:**\\n1. Check if the task's goal is ALREADY satisfied (run the relevant checks)\\n2. Check `git log --all --grep=task:YOUR_TASK_ID` for prior commits\\n3. If complete, verify and mark done. If partial, continue. If not done, proceed.\\n\\n**DB change:** SciDEX now uses PostgreSQL. `get_db()` auto-detects via\\nSCIDEX_DB_BACKEND=postgres env var.\", \"_reset_at\": \"2026-04-18T06:29:22.046013+00:00\", \"_reset_from_status\": \"done\"}"},{"id":"98a473db-b4f9-4584-b110-5ab376355834","title":"[Senate] Triage 20 recent quality gate failures for root cause","description":"Quality gates reject content below acceptable standards, but failures accumulate without triage. Understanding root causes enables systematic improvements to prevent recurring failures.\n\nVerification:\n- 20 recent quality_gate_failures rows are triaged with root_cause classification\n- Each triage entry has: failure_type, root_cause (schema_violation / content_too_short / missing_citations / format_error / other), recommended_fix\n- quality_gate_failures table updated with triage results in PostgreSQL\n- Recurring failure patterns are identified and documented for systemic fixes\n\nQuery: SELECT id, artifact_type, artifact_id, gate_name, failure_reason FROM quality_gate_failures WHERE root_cause IS NULL ORDER BY created_at DESC LIMIT 20. Classify each by root cause, propose fix, update table. Summarize patterns for systemic improvement.","status":"done","priority":84,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-23T02:08:45.958033+00:00","updated_at":"2026-04-23T02:08:45.958033+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{}"},{"id":"33bd3344-ee6a-4e9e-a379-d190a175aa05","title":"[Senate] Task effectiveness scoring and agent feedback loop","description":"Score completed tasks by their actual impact on the system:\n\n1. For each completed task, measure:\n   - Code delta: lines added/removed (net meaningful changes)\n   - DB delta: rows added to key tables (hypotheses, edges, papers, etc.)\n   - Site impact: did any page status change (404->200, 500->200)?\n   - Knowledge growth: new KG edges, new hypotheses, new papers linked\n   - Resource cost: tokens spent on the task (from resource_usage)\n2. Compute task_effectiveness_score = impact / cost\n3. Track per-quest effectiveness: which quests produce the most value per token?\n4. Feed back into task priority: quests with high effectiveness get priority boosts\n5. Identify anti-patterns: tasks that churn (modify same file repeatedly), tasks that break other tasks\n6. Store in task_effectiveness table and display on /senate\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":84,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-19T04:56:25.933089+00:00","updated_at":"2026-04-19T04:56:25.933089+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{\"_reset_note\": \"This task was reset after a database incident on 2026-04-17.\\n\\n**Context:** SciDEX migrated from SQLite to PostgreSQL after recurring DB\\ncorruption. Some work done during Apr 16-17 may have been lost.\\n\\n**Before starting work:**\\n1. 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Unregistered agents cannot receive economic rewards or reputation updates.\n\nVerification:\n- 20 contributing agents are registered in agent_registry with name, model, capabilities, and initial reputation\n- Each registration derives agent metadata from git commit history or debate session records\n- agent_registry rows created in PostgreSQL\n- Remaining unregistered contributing agents count is reduced\n\nQuery: SELECT DISTINCT worker_id FROM agent_contributions WHERE worker_id NOT IN (SELECT agent_id FROM agent_registry) ORDER BY COUNT(*) DESC LIMIT 20. For each contributing agent, infer capabilities from their contribution types (commits→coding, debates→analysis, senate votes→reasoning). Register with initial reputation = 0.5 and appropriate capability ratings. Verify counts.","status":"done","priority":83,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-23T03:25:30.178299+00:00","updated_at":"2026-04-23T03:25:30.178299+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{}"},{"id":"f19da64b-ccdd-46d6-8698-1b8461f93d91","title":"[Senate] Identify and archive 15 stale open Senate proposals older than 30 days","description":"Some Senate governance proposals have been open for 30+ days with no voting activity. Stale proposals block the governance queue and reduce signal-to-noise for active decision-making.\n\nVerification:\n- 15 stale governance proposals (open 30+ days, no votes in 14+ days) are reviewed\n- Each is either: advanced with a casting vote, documented as blocked with next step, or archived with rationale\n- governance_decisions table updated with appropriate status transitions\n- Remaining 30+-day-old open proposal count is reduced\n\nQuery: SELECT id, decision_type, rationale, proposed_by, created_at FROM governance_decisions WHERE status IN ('proposed','open','pending_vote') AND created_at < NOW() - INTERVAL '30 days' ORDER BY created_at ASC LIMIT 15. For each: check if artifact still exists, if proposer is active, if decision is still relevant. Archive or advance with documented rationale.","status":"done","priority":83,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-23T02:01:05.801348+00:00","updated_at":"2026-04-23T02:01:05.801348+00:00","summary":"","completion_notes":"Verification: Query confirmed 0 stale governance decisions (created_at > NOW() - INTERVAL '30 days'). The governance_decisions table was initialized on 2026-04-12 (earliest created_at = 2026-04-12 00:45:01). As of 2026-04-22, oldest decisions are ~10 days old, not 30+ days. All 3423 decisions have status in ('approved', 'rejected', 'pending', 'escalated') - no 'proposed', 'open', or 'pending_vote' statuses exist. Task verification complete - no stale open Senate proposals exist to archive.","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{}"},{"id":"759b089c-b8dc-4ac9-986c-2a460fc15c97","title":"[Senate] Automated quality gates — flag hypotheses with missing evidence or low scores","description":"Create automated quality checks: hypotheses without evidence, debates without synthesis, analyses without KG edges. Surface on /senate.\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":83,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-19T05:12:25.964133+00:00","updated_at":"2026-04-19T05:12:25.964133+00:00","summary":"","completion_notes":"Verification confirm: automated quality gates already shipped to main. Evidence: git log shows commits 975cc5d05/820000a53 confirm task; api.py contains full implementation at lines 4391 (/api/quality-gates), 56609 (/senate/quality-gates), with 13 gate categories. No code changes needed.","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/759b089c-b8d_senate_automated_quality_gates_flag_hyp_spec.md","provider":"any","payload_json":"{\"requirements\": {\"coding\": 8, \"safety\": 9}, \"_reset_note\": \"This task was reset after a database incident on 2026-04-17.\\n\\n**Context:** SciDEX migrated from SQLite to PostgreSQL after recurring DB\\ncorruption. Some work done during Apr 16-17 may have been lost.\\n\\n**Before starting work:**\\n1. Check if the task's goal is ALREADY satisfied (run the relevant checks)\\n2. Check `git log --all --grep=task:YOUR_TASK_ID` for prior commits\\n3. If complete, verify and mark done. If partial, continue. If not done, proceed.\\n\\n**DB change:** SciDEX now uses PostgreSQL. `get_db()` auto-detects via\\nSCIDEX_DB_BACKEND=postgres env var.\", \"_reset_at\": \"2026-04-18T06:29:22.046013+00:00\", \"_reset_from_status\": \"done\"}"},{"id":"793f514e-eed1-4804-a03d-f7d3bfd894f4","title":"[Senate] Automated quality gates — flag hypotheses with missing evidence or low scores","description":"Create automated quality checks: hypotheses without evidence, debates without synthesis, analyses without KG edges. Surface on /senate.","status":"done","priority":83,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-19T05:00:30.524047+00:00","updated_at":"2026-04-19T05:00:30.524047+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"claude","payload_json":"{\"_reset_note\": \"This task was reset after a database incident on 2026-04-17.\\n\\n**Context:** SciDEX migrated from SQLite to PostgreSQL after recurring DB\\ncorruption. Some work done during Apr 16-17 may have been lost.\\n\\n**Before starting work:**\\n1. Check if the task's goal is ALREADY satisfied (run the relevant checks)\\n2. Check `git log --all --grep=task:YOUR_TASK_ID` for prior commits\\n3. If complete, verify and mark done. If partial, continue. If not done, proceed.\\n\\n**DB change:** SciDEX now uses PostgreSQL. `get_db()` auto-detects via\\nSCIDEX_DB_BACKEND=postgres env var.\", \"_reset_at\": \"2026-04-18T06:29:22.046013+00:00\", \"_reset_from_status\": \"done\"}"},{"id":"e6e1fc6a-69a2-49f4-aa66-7ef4c42cab1e","title":"[Senate] CI: Run site health check and fix broken links","description":"Run link_checker.py on all main routes. Report broken links (true failures, not transient 502s). Fix any real issues found.","status":"blocked","priority":82,"task_type":"recurring","frequency":"daily","assigned_slot":"","started_at":null,"completed_at":"2026-04-21T13:37:11.285107+00:00","updated_at":"2026-04-24T13:13:26.348598+00:00","summary":"","completion_notes":"Auto-release: recurring task had no work this cycle","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/e6e1fc6a-69a_senate_ci_run_site_health_check_and_fix_spec.md","provider":"any","payload_json":"{\"requirements\": {\"coding\": 8, \"safety\": 9}, \"auto_tagged_at\": \"2026-04-03T22:29:52.509378\", \"completion_shas\": [\"fdd8e6ad643ed5dee7fb4a7bc0b55d3c404ff568\", \"7526cf07dda84d86e1d11680f65ef5b9f230dcf2\"], \"completion_shas_checked_at\": \"2026-04-12T18:23:13.485853+00:00\", \"completion_shas_missing\": [\"64fe558f83929f325045740f0d4267ba8515c472\", \"bb80043d744abb94030e3730dd1a60d48651b832\", \"7e936384d3549cb5456b71d835cdd1bde58a20f6\", \"6e1ab4b04f17af50fd37d7dd26cbdf8420d9ff05\", \"cf9cf2cab7b4ae3a150c29414e982e00424684a5\", \"3d9af869ac8cde93decfd3c5a1e8e9cf6bd1bc5e\", \"6e2e86040414591ae7b8e56bc4529c8fa291599e\", \"1a034fff6564be6cbc5256fd4578a56e0e71d119\", \"0e77076471912acad0990608ab94b12fa00dd664\", \"3d360553b4632ae4bf1813c8f359a529e27f54bc\", \"12cdaea8e0f2e0d6e11c8a9663e9efd9a333d4de\", \"8c2039f33ed35461879b322ae36f72b9859b4b27\", \"f7025915f70930c858a64a87549303058da34ada\", \"a5a9fcb47806cc9002e88e5032874e2f40d7a826\", \"87602b39c927bf74e6c7291e142c40f80b25587c\", \"ca994924bfb7dc0c88e9e2b7d0a1ac237d226446\", \"ae75c7d29c6d6800ec875582bd3d7bebae22a82b\", \"1db999568a800c444550c1585ea539d0f147d572\", \"863423b1a9fc8c73d29b44e33d319e36a5f2c507\", \"9b7576b30ec0d26368bb67585751094f3a901d72\", \"ff9f2cda30c8f1b0a5953f06e94383c8a2ccd2f0\", \"dcc1a4c36e4f50b30948bc447cb6446b0131e382\"]}"},{"id":"e7915d4f-ef19-401a-ba4d-ede61a2fee1a","title":"[Senate] Reconcile agent reputation scores with recent contribution history","description":"Agent reputation scores in agent_registry may be stale or inconsistent with actual contribution counts. Accurate reputation enables fair reward distribution.\n\n## Steps\n1. Query: `SELECT ar.agent_id, ar.reputation_score, COUNT(ac.id) as contribution_count FROM agent_registry ar LEFT JOIN agent_contributions ac ON ar.agent_id = ac.worker_id AND ac.created_at > NOW() - INTERVAL '30 days' GROUP BY ar.agent_id, ar.reputation_score HAVING ABS(ar.reputation_score - (COALESCE(COUNT(ac.id), 0) * 2)) > 10 LIMIT 25`\n2. For each misaligned agent:\n   - Count contributions in last 30 days\n   - Expected reputation = base_score + (contribution_count * contribution_weight)\n   - If actual reputation deviates > 10 points from expected, update it\n3. Update `agent_registry.reputation_score` and log change to `agent_health_history`\n\n## Acceptance Criteria\n- [ ] 25 agents audited\n- [ ] Agents with >10 point deviation have updated reputation_score\n- [ ] Changes logged to agent_health_history or equivalent table\n- [ ] Changes committed and pushed","status":"done","priority":82,"task_type":"one_shot","frequency":"","assigned_slot":"63","started_at":"2026-04-23T05:18:45.022404+00:00","completed_at":"2026-04-23T04:33:15.542376+00:00","updated_at":"2026-04-23T05:20:29.849592+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{}"},{"id":"4cfdd27b-2e80-4bf1-83ce-785992e0bccf","title":"[Senate] Capture belief snapshots for 30 hypotheses missing recent state","description":"Belief snapshots record the confidence and evidence state of a hypothesis at a point in time. Without them, we can't track how beliefs evolve as new evidence arrives.\n\n## Steps\n1. Query: `SELECT id, title, confidence, composite_score, updated_at FROM hypotheses WHERE NOT EXISTS (SELECT 1 FROM belief_snapshots bs WHERE bs.hypothesis_id = id AND bs.created_at > NOW() - INTERVAL '30 days') ORDER BY updated_at DESC LIMIT 30`\n2. For each hypothesis, insert a belief snapshot: `INSERT INTO belief_snapshots (hypothesis_id, confidence, composite_score, evidence_for_count, evidence_against_count, snapshot_date) VALUES (...)`\n3. Count evidence_for, evidence_against from the respective JSON fields (JSONB array length)\n4. Verify: `SELECT COUNT(*) FROM belief_snapshots WHERE created_at > NOW() - INTERVAL '1 day'` increases\n\n## Acceptance Criteria\n- [ ] 30 snapshots created (one per hypothesis)\n- [ ] Each snapshot has: hypothesis_id, confidence, composite_score, snapshot_date\n- [ ] Changes committed and pushed\n\n## Constraints\n- If belief_snapshots table doesn't exist, create it first or document the gap\n- Use `get_db()` with explicit commit","status":"done","priority":82,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-23T04:23:26.953182+00:00","updated_at":"2026-04-23T04:23:26.953182+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{}"},{"id":"67d7d9f9-b943-4ba4-acc2-8ab808ddb208","title":"[Senate] Distribute discovery dividends for pending world-model improvements","description":"Several world-model improvements have undistributed payout status. Discovery dividends must be settled so upstream contributions receive back-propagated credit.\n\nVerification:\n- Pending world_model_improvements are distributed or marked blocked with rationale\n- Distribution uses the existing credit-backprop economics driver and provenance graph\n- Remaining undistributed improvement count is reduced\n\nStart by reading this task's spec. Select pending world_model_improvements from PostgreSQL (dbname=scidex user=scidex_app) ordered by detected_at and payout_pool. Run or inspect the existing discovery-dividend/backprop driver for each eligible improvement. Verify token_ledger/token_reward_events effects or record explicit blocker details.","status":"done","priority":82,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-23T01:36:33.907108+00:00","updated_at":"2026-04-23T01:36:33.907108+00:00","summary":"","completion_notes":"Infrastructure issue: EROFS error on /home/ubuntu/Orchestra/data/claude_creds/max_outlook/session-env/ blocks all Bash tool calls. The dividend distribution itself succeeded in prior iterations (DB updated, token_reward_events and token_ledger entries created). Spec file modified in worktree but not committed due to bash blockage. Recommend manual push of worktree branch or escalation to fix EROFS issue.","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_engine_world_model_dividend_distribution_spec.md","provider":"any","payload_json":"{}"},{"id":"65342188-f8d9-4da3-8800-2f55d3f4e31c","title":"[Senate] Distribute discovery dividends for 3 pending world-model improvements","description":"World-model improvements have undistributed payout status. Discovery dividends must be settled so upstream contributions receive back-propagated credit.\n\nVerification:\n- 3 pending world_model_improvements are distributed or marked blocked with rationale\n- Distribution uses the existing credit-backprop economics driver and provenance graph\n- Remaining undistributed improvement count is reduced\n\nStart by reading this task's spec and checking for duplicate recent work.","status":"done","priority":82,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-22T23:24:09.152772+00:00","updated_at":"2026-04-22T23:24:09.152772+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_engine_world_model_dividend_distribution_spec.md","provider":"any","payload_json":"{\"requirements\": {\"coding\": 7, \"reasoning\": 7, \"safety\": 8}}"},{"id":"0c46779c-93e3-4516-aa28-45be72d16635","title":"[Senate] Capture belief snapshots for 30 hypotheses with stale confidence data","description":"Many active hypotheses have confidence data that hasn't been snapshotted in weeks, making it impossible to track whether beliefs are converging or diverging.\n\nVerification:\n- 30 hypotheses gain belief_snapshots rows within the last 7 days\n- Each snapshot captures composite_score, evidence_count, market_price, and confidence_score from live DB state\n- No two snapshots from the same hypothesis on the same day are created\n\nStart by selecting active hypotheses from PostgreSQL (dbname=scidex user=scidex_app) where no belief_snapshots row exists with snapshot_date >= CURRENT_DATE - 7. For each, compute current score and evidence counts from the hypotheses table and linked evidence. Insert belief_snapshots rows idempotently and verify counts.","status":"done","priority":81,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-24T15:09:42.513898+00:00","updated_at":"2026-04-24T15:09:42.513898+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_engine_belief_snapshot_backfill_spec.md","provider":"any","payload_json":"{}"},{"id":"a1cc1000-2c90-434a-af6c-cc7dbf5c4363","title":"[Senate] Capture belief snapshots for 50 hypotheses missing recent state","description":"Many hypotheses lack a belief snapshot in the last seven days. Belief snapshots are required to measure convergence and evidence-driven confidence changes.\n\nVerification:\n- 50 hypotheses gain current belief_snapshots rows\n- Snapshots capture score, evidence count, citation count, and reviewer count from live state\n- Remaining hypotheses missing recent snapshots is reduced\n\nStart by reading this task's spec. Select active hypotheses from PostgreSQL (dbname=scidex user=scidex_app) without a belief snapshot in the past seven days. Compute current score, evidence_count, citations, and reviewer_count from existing fields and links. Insert idempotent belief_snapshots rows and verify no duplicate same-day snapshots.","status":"done","priority":81,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-23T01:32:54.703704+00:00","updated_at":"2026-04-23T01:32:54.703704+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_engine_belief_snapshot_backfill_spec.md","provider":"any","payload_json":"{}"},{"id":"6195599f-5929-4a94-96d2-3ee42113ae6f","title":"[Senate] Capture belief snapshots for 50 hypotheses missing recent state","description":"Hypotheses lack a belief snapshot in the last seven days. Belief snapshots are required to measure convergence and evidence-driven confidence changes.\n\nVerification:\n- 50 hypotheses gain current belief_snapshots rows\n- Snapshots capture score, evidence count, citation count, and reviewer count from live state\n- Remaining hypotheses missing recent snapshots is reduced\n\nStart by reading this task's spec and checking for duplicate recent work.","status":"done","priority":81,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-22T22:58:31.867341+00:00","updated_at":"2026-04-22T22:58:31.867341+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_engine_belief_snapshot_backfill_spec.md","provider":"any","payload_json":"{}"},{"id":"3a5b980b-45f7-4e95-8dff-b8efae22b934","title":"[Senate] Link 50 isolated artifacts into the governance graph","description":"Many artifacts have no artifact_links edges. Isolated artifacts cannot participate in provenance, lifecycle governance, or discovery-dividend backprop.\n\nVerification:\n- 50 isolated artifacts gain artifact_links edges or documented no-link rationale\n- Each link is derived from entity_ids, parent_version_id, dependencies, provenance_chain, or related DB rows\n- Remaining isolated artifact count is reduced\n\nStart by reading this task's spec. Select isolated artifacts from PostgreSQL (dbname=scidex user=scidex_app) ordered by usage_score, citation_count, and recency. Infer relationships from entity_ids, provenance_chain, dependencies, versions, analyses, or hypotheses. Insert only high-confidence artifact_links and verify governance graph connectivity counts.","status":"done","priority":80,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-23T01:10:07.579216+00:00","updated_at":"2026-04-23T01:10:07.579216+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_engine_artifact_link_backfill_spec.md","provider":"any","payload_json":"{}"},{"id":"0fd31858-d37f-41fa-8abc-3dae2a704935","title":"[Senate] Link 50 isolated artifacts into the governance graph","description":"Artifacts have no artifact_links edges. Isolated artifacts cannot participate in provenance, lifecycle governance, or discovery-dividend backprop.\n\nVerification:\n- 50 isolated artifacts gain artifact_links edges or documented no-link rationale\n- Each link is derived from entity_ids, parent_version_id, dependencies, provenance_chain, or related DB rows\n- Remaining isolated artifact count is reduced\n\nStart by reading this task's spec and checking for duplicate recent work.","status":"done","priority":80,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-22T22:54:12.212122+00:00","updated_at":"2026-04-22T22:54:12.212122+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_engine_artifact_link_backfill_spec.md","provider":"any","payload_json":"{}"},{"id":"ebdcb998-cfec-4280-ba56-12f0ff280bea","title":"[Senate] Link 50 isolated artifacts into the governance graph","description":"Many artifacts have no artifact_links edges. Isolated artifacts cannot participate in provenance, lifecycle governance, or discovery-dividend backprop.\n\nVerification:\n- 50 isolated artifacts gain artifact_links edges or documented no-link rationale\n- Each link is derived from entity_ids, parent_version_id, dependencies, provenance_chain, or related DB rows\n- Remaining isolated artifact count is recorded before and after\n\nStart by reading this task's spec and checking for duplicate recent work.","status":"done","priority":80,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-21T20:50:20.777257+00:00","updated_at":"2026-04-21T20:50:20.777257+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_engine_artifact_link_backfill_spec.md","provider":"any","payload_json":"{}"},{"id":"a572c16b-dd61-43db-8183-ff32e284df20","title":"[Senate] Security Manager: service hardening review — nginx, systemd, permissions","description":"Review infrastructure security:\n1. nginx config: check for security headers (CSP, X-Frame-Options, HSTS, etc.)\n2. File permissions: check scidex.db, .env, config files are not world-readable\n3. Systemd services: review User/Group, PrivateTmp, NoNewPrivileges settings\n4. Network: check what ports are open (ss -tlnp), ensure only 80/443 are public\n5. SSH: verify key-based auth is working, check authorized_keys\n6. Process isolation: verify agents cant write to critical system files\n7. DB access: check if scidex.db WAL mode is set, check for locking issues\nCRITICAL SAFETY RULES:\n- NEVER modify SSH config or authorized_keys\n- NEVER change firewall rules without human approval\n- NEVER restart nginx or modify its config without human approval\n- Always ensure the human operator can SSH in and access the system\n- Document recommendations, do not implement without approval\nCreate a recovery plan: if security changes go wrong, how does the operator regain access?\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":80,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-21T10:01:27.120268+00:00","updated_at":"2026-04-21T10:01:27.120268+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"claude","payload_json":"{\"requirements\": {\"coding\": 9, \"safety\": 10}}"},{"id":"aa561240-161e-481f-8c10-34f4852bf58e","title":"[Senate] Security audit — review access controls, API keys, and data protection","description":"Audit SciDEX security posture:\n- Review all API endpoints for auth requirements\n- Check for SQL injection in query parameters\n- Ensure no secrets in git history\n- Review file permissions on DB and config files\n- Check nginx config for security headers\n- Document security architecture in SECURITY.md\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":80,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-21T09:58:56.159678+00:00","updated_at":"2026-04-21T09:58:56.159678+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"claude","payload_json":"{\"requirements\": {\"coding\": 9, \"safety\": 10}}"},{"id":"758016bf-ebcd-4a73-be2b-6fe910d76e74","title":"[Senate] Add wiki_quality_scores migration script","description":"Create migrations/add_wiki_quality_scores.py that creates the wiki_quality_scores table (if it doesn't exist) with columns: id, slug, scored_at, h1_intro, h2_prose_ratio, h3_depth, h4_crosslinks, h5_wikipedia, h6_completeness, composite_score, word_count, issues_json, improvement_plan, scorer_version. Add indexes on slug and composite_score. The table definition matches the CREATE TABLE in scripts/wiki_quality_scorer.py. Run the migration at the end of the file if __name__ == '__main__'. Add a work log entry to docs/planning/specs/q-wiki-quality_spec.md noting the migration was created.\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":80,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-19T10:24:49.621071+00:00","updated_at":"2026-04-19T10:24:49.621071+00:00","summary":"","completion_notes":"Migration already on origin/main (commit 700e194d0, verified identical to task branch). Ran migration to create missing indexes on production DB: idx_wqs_slug and idx_wqs_composite now exist. Table has 163 rows. Work log entry already present in q-wiki-quality_spec.md.","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/q-wiki-quality_spec.md","provider":"codex","payload_json":"{\"_reset_note\": \"This task was reset after a database incident on 2026-04-17.\\n\\n**Context:** SciDEX migrated from SQLite to PostgreSQL after recurring DB\\ncorruption. Some work done during Apr 16-17 may have been lost.\\n\\n**Before starting work:**\\n1. Check if the task's goal is ALREADY satisfied (run the relevant checks)\\n2. Check `git log --all --grep=task:YOUR_TASK_ID` for prior commits\\n3. If complete, verify and mark done. If partial, continue. If not done, proceed.\\n\\n**DB change:** SciDEX now uses PostgreSQL. `get_db()` auto-detects via\\nSCIDEX_DB_BACKEND=postgres env var.\", \"_reset_at\": \"2026-04-18T06:29:22.046013+00:00\", \"_reset_from_status\": \"done\"}"},{"id":"51732b3e-5680-43a9-b971-3665c14deb30","title":"[Senate] Backfill convergence scores for 50 unscored hypotheses","description":"50 hypotheses have convergence_score=0. Calculate convergence based on KG connectivity, evidence overlap with related hypotheses, and citation quality.\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":80,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-19T06:05:30.585996+00:00","updated_at":"2026-04-19T06:05:30.585996+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/51732b3e_568_spec.md","provider":"any","payload_json":"{\"_reset_note\": \"This task was reset after a database incident on 2026-04-17.\\n\\n**Context:** SciDEX migrated from SQLite to PostgreSQL after recurring DB\\ncorruption. Some work done during Apr 16-17 may have been lost.\\n\\n**Before starting work:**\\n1. Check if the task's goal is ALREADY satisfied (run the relevant checks)\\n2. Check `git log --all --grep=task:YOUR_TASK_ID` for prior commits\\n3. If complete, verify and mark done. If partial, continue. If not done, proceed.\\n\\n**DB change:** SciDEX now uses PostgreSQL. `get_db()` auto-detects via\\nSCIDEX_DB_BACKEND=postgres env var.\", \"_reset_at\": \"2026-04-18T06:29:22.046013+00:00\", \"_reset_from_status\": \"done\"}"},{"id":"390f4d5f-2c7b-4257-840e-ac11b42c891d","title":"[Senate] Clean up failed analyses and malformed debate data to reduce quality gate flags","description":"\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":80,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-19T05:52:42.661198+00:00","updated_at":"2026-04-19T05:52:42.661198+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/390f4d5f_2c7_spec.md","provider":"any","payload_json":"{\"requirements\": {\"coding\": 6, \"reasoning\": 7}, \"_reset_note\": \"This task was reset after a database incident on 2026-04-17.\\n\\n**Context:** SciDEX migrated from SQLite to PostgreSQL after recurring DB\\ncorruption. Some work done during Apr 16-17 may have been lost.\\n\\n**Before starting work:**\\n1. Check if the task's goal is ALREADY satisfied (run the relevant checks)\\n2. Check `git log --all --grep=task:YOUR_TASK_ID` for prior commits\\n3. If complete, verify and mark done. If partial, continue. If not done, proceed.\\n\\n**DB change:** SciDEX now uses PostgreSQL. `get_db()` auto-detects via\\nSCIDEX_DB_BACKEND=postgres env var.\", \"_reset_at\": \"2026-04-18T06:29:22.046013+00:00\", \"_reset_from_status\": \"done\"}"},{"id":"5235fc5a-885c-4392-93df-0fd591775df0","title":"[Senate] Add market proposal governance mechanism","description":"Governance for proposing new market types: propose → vote (reputation-weighted) → approve/reject → auto-create markets. Token cost for proposals, quorum requirements. See docs/planning/specs/market_proposal_governance_spec.md\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":80,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-19T05:50:51.971584+00:00","updated_at":"2026-04-19T05:50:51.971584+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/5235fc5a_885_spec.md","provider":"any","payload_json":"{\"requirements\": {\"coding\": 8, \"safety\": 9}, \"completion_shas\": [\"92bbbdea8687dafe21321a14e0ae3a2f73e2ed95\"], \"completion_shas_checked_at\": \"2026-04-17T08:11:20.251589+00:00\", \"_reset_note\": \"This task was reset after a database incident on 2026-04-17.\\n\\n**Context:** SciDEX migrated from SQLite to PostgreSQL after recurring DB\\ncorruption. Some work done during Apr 16-17 may have been lost.\\n\\n**Before starting work:**\\n1. Check if the task's goal is ALREADY satisfied (run the relevant checks)\\n2. Check `git log --all --grep=task:YOUR_TASK_ID` for prior commits\\n3. If complete, verify and mark done. If partial, continue. If not done, proceed.\\n\\n**DB change:** SciDEX now uses PostgreSQL. `get_db()` auto-detects via\\nSCIDEX_DB_BACKEND=postgres env var.\", \"_reset_at\": \"2026-04-18T06:29:22.046013+00:00\", \"_reset_from_status\": \"done\"}"},{"id":"23a6a827-5769-4767-9f6d-6bf701377e2f","title":"[Senate] API audit — ensure all data is accessible via JSON endpoints","description":"Audit and create missing JSON API endpoints:\n- /api/hypotheses — list/search hypotheses (JSON)\n- /api/hypotheses/{id} — hypothesis detail (JSON)\n- /api/analyses — list analyses (JSON)\n- /api/analyses/{id} — analysis detail (JSON)\n- /api/wiki — list/search wiki pages (JSON)\n- /api/wiki/{slug} — wiki page detail (JSON)\n- /api/edges — knowledge graph edges (JSON)\n- /api/papers — papers list (JSON)\n- /api/debates — debates list (JSON)\n- /api/skills — skills/tools list (JSON)\n- /api/gaps — gaps list (JSON)\nAll endpoints should support pagination (?limit=&offset=), filtering, and sorting.\nThese APIs enable: external clients, search indexing, mobile apps, agent tooling.\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":80,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-19T05:41:30.273947+00:00","updated_at":"2026-04-19T05:41:30.273947+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"claude","payload_json":"{\"_reset_note\": \"This task was reset after a database incident on 2026-04-17.\\n\\n**Context:** SciDEX migrated from SQLite to PostgreSQL after recurring DB\\ncorruption. Some work done during Apr 16-17 may have been lost.\\n\\n**Before starting work:**\\n1. Check if the task's goal is ALREADY satisfied (run the relevant checks)\\n2. Check `git log --all --grep=task:YOUR_TASK_ID` for prior commits\\n3. If complete, verify and mark done. If partial, continue. If not done, proceed.\\n\\n**DB change:** SciDEX now uses PostgreSQL. `get_db()` auto-detects via\\nSCIDEX_DB_BACKEND=postgres env var.\", \"_reset_at\": \"2026-04-18T06:29:22.046013+00:00\", \"_reset_from_status\": \"done\"}"},{"id":"d18109b2-20ac-49eb-9cc7-06f542e59592","title":"[Senate] Build rollback and version control for all content","description":"Enable reverting mistakes across all content types:\n- Store full snapshots in edit_history diff_json (before/after state)\n- /api/rollback endpoint: given edit_id, restore previous state\n- Confirmation UI before rollback executes\n- For hypotheses: revert score, evidence, metadata to previous version\n- For wiki pages: revert content_md to previous version\n- For KG edges: restore deleted edges, remove added ones\n- Use git history as secondary audit trail for api.py and script changes\n- Show \"Revert\" button on edit history entries\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":80,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-19T05:33:03.636676+00:00","updated_at":"2026-04-19T05:33:03.636676+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{\"_reset_note\": \"This task was reset after a database incident on 2026-04-17.\\n\\n**Context:** SciDEX migrated from SQLite to PostgreSQL after recurring DB\\ncorruption. Some work done during Apr 16-17 may have been lost.\\n\\n**Before starting work:**\\n1. Check if the task's goal is ALREADY satisfied (run the relevant checks)\\n2. Check `git log --all --grep=task:YOUR_TASK_ID` for prior commits\\n3. If complete, verify and mark done. If partial, continue. If not done, proceed.\\n\\n**DB change:** SciDEX now uses PostgreSQL. `get_db()` auto-detects via\\nSCIDEX_DB_BACKEND=postgres env var.\", \"_reset_at\": \"2026-04-18T06:29:22.046013+00:00\", \"_reset_from_status\": \"done\"}"},{"id":"9fa5956f-0563-4421-806a-5d39e1cbc9e8","title":"[Senate] Add user feedback mechanisms across all SciDEX pages","description":"Enable human feedback on all content:\n- Add feedback widgets to hypothesis detail pages (upvote/downvote, comments)\n- Add feedback on wiki pages (suggest edits, flag errors, add notes)\n- Add feedback on analyses (rate quality, suggest improvements)\n- Create feedback table: id, actor_id, entity_type, entity_id, feedback_type (vote/comment/flag/edit_suggestion), content, created_at\n- /api/feedback endpoint for submitting and querying feedback\n- Show feedback counts and recent comments on detail pages\n- Feedback from humans should influence hypothesis scoring over time\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":80,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-19T05:32:30.204112+00:00","updated_at":"2026-04-19T05:32:30.204112+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{\"_reset_note\": \"This task was reset after a database incident on 2026-04-17.\\n\\n**Context:** SciDEX migrated from SQLite to PostgreSQL after recurring DB\\ncorruption. Some work done during Apr 16-17 may have been lost.\\n\\n**Before starting work:**\\n1. Check if the task's goal is ALREADY satisfied (run the relevant checks)\\n2. Check `git log --all --grep=task:YOUR_TASK_ID` for prior commits\\n3. If complete, verify and mark done. If partial, continue. If not done, proceed.\\n\\n**DB change:** SciDEX now uses PostgreSQL. `get_db()` auto-detects via\\nSCIDEX_DB_BACKEND=postgres env var.\", \"_reset_at\": \"2026-04-18T06:29:22.046013+00:00\", \"_reset_from_status\": \"done\"}"},{"id":"1f6ad36e-0df7-4654-8513-2cc0ef7fc072","title":"[Senate] Implement convergence scoring for the overall system","description":"Compute and display: hypothesis coverage by disease area, evidence quality distribution, KG completeness metrics, agent productivity trends. Show on /senate.\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":80,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-19T05:29:43.029815+00:00","updated_at":"2026-04-19T05:29:43.029815+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{\"_reset_note\": \"This task was reset after a database incident on 2026-04-17.\\n\\n**Context:** SciDEX migrated from SQLite to PostgreSQL after recurring DB\\ncorruption. Some work done during Apr 16-17 may have been lost.\\n\\n**Before starting work:**\\n1. Check if the task's goal is ALREADY satisfied (run the relevant checks)\\n2. Check `git log --all --grep=task:YOUR_TASK_ID` for prior commits\\n3. If complete, verify and mark done. If partial, continue. If not done, proceed.\\n\\n**DB change:** SciDEX now uses PostgreSQL. `get_db()` auto-detects via\\nSCIDEX_DB_BACKEND=postgres env var.\", \"_reset_at\": \"2026-04-18T06:29:22.046013+00:00\", \"_reset_from_status\": \"done\", \"completion_shas\": [\"1fc978e89b7cba2d8d7a00b94cc2dc790b7f6b95\"], \"completion_shas_checked_at\": \"2026-04-19T05:29:43.011172+00:00\"}"},{"id":"fd00fcd3-2e0a-4dc8-8b82-76f6c2fdc37d","title":"[Senate] Knowledge growth rate tracking and trajectory","description":"Track the rate of knowledge growth to ensure the system is converging, not stalling:\n\n1. Every hour, snapshot: analyses_count, hypotheses_count, kg_edges_count (valid only), \n   papers_count, wiki_pages_count, causal_edges_count\n2. Store in knowledge_snapshots table (timestamp, metric, value)\n3. Calculate growth rates: edges/hour, hypotheses/hour, papers/hour\n4. Detect stalls: if growth rate drops below threshold for 2 hours, alert\n5. Detect regression: if any count decreases, investigate (data corruption? bad migration?)\n6. Track quality-adjusted growth: only count edges with non-empty source/target, hypotheses with citations\n7. Display growth chart on /senate with trend lines\n8. Project: at current rate, when will we hit 1000 hypotheses? 10,000 edges? 100 analyses?\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":80,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-19T05:28:51.444832+00:00","updated_at":"2026-04-19T05:28:51.444832+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{\"_reset_note\": \"This task was reset after a database incident on 2026-04-17.\\n\\n**Context:** SciDEX migrated from SQLite to PostgreSQL after recurring DB\\ncorruption. Some work done during Apr 16-17 may have been lost.\\n\\n**Before starting work:**\\n1. Check if the task's goal is ALREADY satisfied (run the relevant checks)\\n2. Check `git log --all --grep=task:YOUR_TASK_ID` for prior commits\\n3. If complete, verify and mark done. If partial, continue. If not done, proceed.\\n\\n**DB change:** SciDEX now uses PostgreSQL. `get_db()` auto-detects via\\nSCIDEX_DB_BACKEND=postgres env var.\", \"_reset_at\": \"2026-04-18T06:29:22.046013+00:00\", \"_reset_from_status\": \"done\"}"},{"id":"dfd2bd72-a60d-4f2c-ae7f-087e1ea8dca1","title":"[Senate] Route health check — test all FastAPI routes for 500 errors","description":"Test every registered FastAPI GET route for HTTP 500 errors. Run ci_route_health.py which extracts routes from app.routes, curls each GET route, and logs 500s to route_health table. Complements the existing link checker by catching orphaned routes, broken templates, and None-in-f-string errors.","status":"archived","priority":80,"task_type":"recurring","frequency":"every-8h","assigned_slot":"","started_at":null,"completed_at":"2026-04-13T11:31:57.259152+00:00","updated_at":"2026-04-16T19:47:42.900032+00:00","summary":"","completion_notes":"Auto-release: recurring task had no work this cycle","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"/home/ubuntu/scidex/.claude/worktrees/task-48c4932c-c441-44b4-8535-2f27c85128d3/docs/planning/specs/1771ac79_dea_spec.md","provider":"any","payload_json":"{\"requirements\": {\"analysis\": 3}, \"completion_shas\": [\"27840ec0933acb688cf1082ddfa570bd4912a98f\"], \"completion_shas_checked_at\": \"2026-04-13T01:55:50.218827+00:00\"}"},{"id":"5f8f9aa4-979a-4e6c-b1bf-8e06f2fa84fc","title":"[Senate] Triage 15 governance decisions pending policy compliance review","description":"Governance decisions pending review block artifact lifecycle transitions and agent ownership changes. For 15 governance decisions with status='pending' (SELECT id, decision_type, artifact_ids, rationale FROM governance_decisions WHERE status='pending' ORDER BY created_at ASC LIMIT 15): (1) read decision_type (deprecate/merge/promote/archive) and rationale; (2) check policy compliance: is the rationale evidence-based? does it conflict with active quests? are required approvals obtained?; (3) if compliant: UPDATE status='approved', trigger the decision action; (4) if non-compliant: UPDATE status='rejected' with rejection_reason; (5) for borderline cases: UPDATE status='needs_review', add a structured comment with missing requirements. Verification: 15 decisions processed; status changed from 'pending' for all rows.","status":"done","priority":79,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-22T23:15:32.367993+00:00","updated_at":"2026-04-22T23:15:32.367993+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_engine_governance_decision_triage_spec.md","provider":"any","payload_json":"{\"requirements\": {\"coding\": 7, \"reasoning\": 7, \"safety\": 8}}"},{"id":"1771ac79-dea7-47c4-a5c0-602b39ca9b34","title":"[Senate] CI: Route health check — test all known routes for 500 errors","description":"The existing link checker (scidex-linkcheck service) crawls pages and checks links found in HTML content. But it missed /agent-performance returning 500 because no page links to it directly (orphaned decorator with no function body).\n\nNeed: a ROUTE-level health check that tests every registered FastAPI route, not just links found in crawled HTML. Every 8 hours:\n\n1. Extract all routes from the FastAPI app: app.routes → list of paths\n2. For each GET route, curl it and check for HTTP 500\n3. For 500s: log the route, error message, and traceback (from journalctl)\n4. Report: total routes tested, routes passing, routes with 500s\n5. Log to a route_health table for dashboarding\n\nDon't go crazy running it — every 8h is sufficient. The goal is catching orphaned routes, broken templates, and None-in-f-string errors before users report them.\n\nAlso: the existing link check tasks (e6e1fc6a, 5616905a) run every 6h. That's fine for link integrity. This new route check is complementary — it tests the routes themselves, not just the links between pages.","status":"blocked","priority":78,"task_type":"recurring","frequency":"every 8h","assigned_slot":"","started_at":null,"completed_at":"2026-04-23T12:42:01.340643+00:00","updated_at":"2026-04-24T13:13:28.459034+00:00","summary":"","completion_notes":"Auto-release: recurring task had no work this cycle","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/1771ac79_dea_spec.md","provider":"any","payload_json":"{\"completion_shas\": [\"0652dc49e4dd852457c74d35711f7d6f4c68ba99\", \"d611be734560882f323b87703b68e1dbf379f4e0\", \"607dabafc5582dc91af73709a8400f2a21cfea4f\", \"7fa2078b99a8ac781e1a5acfdc22fbcdb4fc1eff\", \"5ab47e6d07c2205b5f2e7253d2b29d7167a89314\", \"b959c4db9f954ace104f47be5392ddc951519336\", \"a884ea87888d6ad0510b06bb8fab1b39e3b36e75\", \"6baeec23566db4ba9082b698088f56eaf1738072\", \"6311dece3e18220b2b6101d246a441ed3111903d\", \"cd4b79cffca8af0f9c8013f93667f4b17d9c7992\", \"a5495ab8005d16e634f6d3b4806105b70c5b47f1\", \"1775a7c3bfd903c65da141e82dce1374485d649d\", \"2258b59ef82e6f5b99561969d5fc3d876e735644\", \"8abc1361c67cc4ea94cdd3a605154a70b21ac307\"], \"completion_shas_checked_at\": \"2026-04-12T23:11:45.131384+00:00\", \"completion_shas_missing\": [\"ae21acf57ec95bbc80598916384cb0674fbae1d4\", \"ebed2e29b1d0c1e8c48f472f955fb943a702f6cd\", \"5c0a25ec9362a01e4fff3e7e005178faad39e344\", \"85dada9b4e046c610976c74883f6e82b28be0307\", \"a0556b113ed552595b838cd384fb58a4c72a09c0\", \"d6fa283ac9db3af3bade2c297b8b5006c6234334\", \"a6f1a784ebc49230a373231a208eb047700485aa\", \"7acc5e123608d425ad3953c12591f3de126dca58\", \"58a497aa8d25868b53509be0f097163db888f0e2\", \"1418ec657bfea1764485141cde898ea47e0b5fa6\", \"95fa9481c0e2c04b1a078c70ebdbc74d281f610f\", \"fbf4af673ba9f2546df471db9930c2093638d1da\", \"b0caf209cb976511af06519481619049157a60c6\", \"3ee013f3081e938d5b863a6c5c071dbcd553b92c\", \"d98da97d87f9090a922cc2ba9f2111c8261a1f07\", \"45dffbd7bcd6eb273b30d50fe3383aa2f532b198\", \"f46115918a342bd8d1fc45f4cad4baa18c64bcb7\", \"e61e397f042fd2b7eb855290242546426cf20e39\", \"018611a51c2a3b012507b0c401e22a66395be0b2\"], \"requirements\": {\"coding\": 5}}"},{"id":"abb5a7d8-30d5-4a8e-ac33-9fac21cc9b3a","title":"[Senate] Validate 30 spec files for completeness against required sections","description":"Task spec files in docs/planning/specs/ that are missing required sections (Goal, Acceptance Criteria, Work Log) cause merge gate failures and agent confusion.\n\n## Steps\n1. List all spec files: `ls docs/planning/specs/*.md`\n2. For each spec file, check for required sections:\n   - `## Goal` or `## What the agent does`\n   - `## Acceptance Criteria` (or equivalent)\n3. For specs missing sections, add minimal placeholder content with a TODO marker\n4. Focus on 30 spec files with the most recent task associations (check task spec_path links)\n5. Verify: all checked specs have at minimum 2 required sections\n\n## Acceptance Criteria\n- [ ] 30 spec files checked\n- [ ] All missing required sections are added (even as stubs)\n- [ ] No spec file is left with zero headings\n- [ ] Changes committed and pushed\n\n## Constraints\n- Do NOT add fabricated acceptance criteria — use \"[To be defined]\" placeholders\n- This is governance work, not feature work — keep edits minimal","status":"done","priority":78,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-23T03:54:37.123256+00:00","updated_at":"2026-04-23T03:54:37.123256+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{\"completion_shas\": [\"603d1f4a9\", \"710264e7c\"], \"completion_shas_checked_at\": \"2026-04-23T03:54:12.873853+00:00\"}"},{"id":"a0bc8d1d-7ef4-4e62-9425-79c942f95c05","title":"[Senate] Build agent activity timeline — visual history of all system events","description":"Create /api/timeline endpoint and /senate/timeline page showing chronological feed of: analyses run, hypotheses generated, debates held, tasks completed, DB changes. Filterable by type and time range.\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":78,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-19T10:36:45.538613+00:00","updated_at":"2026-04-19T10:36:45.538613+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{\"_reset_note\": \"This task was reset after a database incident on 2026-04-17.\\n\\n**Context:** SciDEX migrated from SQLite to PostgreSQL after recurring DB\\ncorruption. Some work done during Apr 16-17 may have been lost.\\n\\n**Before starting work:**\\n1. Check if the task's goal is ALREADY satisfied (run the relevant checks)\\n2. Check `git log --all --grep=task:YOUR_TASK_ID` for prior commits\\n3. If complete, verify and mark done. If partial, continue. If not done, proceed.\\n\\n**DB change:** SciDEX now uses PostgreSQL. `get_db()` auto-detects via\\nSCIDEX_DB_BACKEND=postgres env var.\", \"_reset_at\": \"2026-04-18T06:29:22.046013+00:00\", \"_reset_from_status\": \"done\"}"},{"id":"c2625099-3ea3-426e-8113-c32c9ba45c56","title":"[Senate] Triage 15 failed quality gate evaluations and resolve blockers","description":"Failed quality gates block hypothesis promotion, wiki publication, and artifact registration from completing. For 15 quality_gate_evaluations with status='failed' (SELECT id, gate_type, artifact_id, failure_reason FROM quality_gate_evaluations WHERE status='failed' ORDER BY created_at DESC LIMIT 15): (1) read failure_reason and gate_type; (2) classify failure: missing field (fix by populating), score below threshold (fix by improving content), dependency missing (create a task to fill it); (3) for fixable failures: apply the fix and rerun the gate evaluation; (4) for structural blockers: UPDATE status='blocked', add resolution_path note; (5) for stale/invalid gates: UPDATE status='archived'. Verification: 15 gates processed; at minimum 5 resolved from 'failed' to 'passed' or 'blocked'.","status":"done","priority":77,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-22T23:21:49.305488+00:00","updated_at":"2026-04-22T23:21:49.305488+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_engine_quality_gate_failure_triage_spec.md","provider":"any","payload_json":"{\"requirements\": {\"coding\": 7, \"reasoning\": 7, \"safety\": 8}}"},{"id":"86621ea6-c8aa-452e-a04e-9d350679d882","title":"[Senate] Audit content ownership for 25 orphan artifacts without owners","description":"Artifacts without content_owner_id cannot receive governance notifications, vote on decisions, or be credited when downstream work validates them. For 25 artifacts where content_owner_id IS NULL (SELECT id, artifact_type, title, created_by FROM artifacts WHERE content_owner_id IS NULL LIMIT 25): (1) check created_by field — if it's an agent_id, set content_owner_id=created_by; (2) if created_by is missing, search git log for commits referencing this artifact_id to find the creating agent; (3) if still no owner, assign to the quest agent for the relevant layer (Agora=c488a683, Atlas=415b277f); (4) UPDATE artifacts SET content_owner_id=<agent_id> WHERE id=<id>. Verification: 25 artifacts have non-null content_owner_id.","status":"done","priority":77,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-22T22:56:50.186300+00:00","updated_at":"2026-04-22T22:56:50.186300+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/quest_engine_content_owner_backfill_spec.md","provider":"any","payload_json":"{}"},{"id":"a0fb31dd-b590-4fa2-9947-2b11a89a8440","title":"[Senate] Populate agent_performance table","description":"agent_performance table has 0 rows. Backfill from debate_sessions - extract per-persona (Theorist/Skeptic/Expert/Synthesizer) quality metrics: token counts from debate_rounds, quality_score from debate_sessions. This powers the /senate governance dashboard.","status":"done","priority":76,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-25T12:54:25.732072+00:00","updated_at":"2026-04-25T12:54:25.732072+00:00","summary":"","completion_notes":"Auto-release: non-recurring task produced no commits this iteration; requeuing for next cycle","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{}"},{"id":"dcf8f1f1-4a41-4820-b377-2218cce3df29","title":"[Senate] Implement automated quality scoring for completed tasks","description":"After each task completes, auto-evaluate: did api.py pass syntax? were new DB rows added? any 500 errors introduced? Score task quality 0-1 and store in task_effectiveness.\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":76,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-19T10:54:05.660490+00:00","updated_at":"2026-04-19T10:54:05.660490+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{\"_reset_note\": \"This task was reset after a database incident on 2026-04-17.\\n\\n**Context:** SciDEX migrated from SQLite to PostgreSQL after recurring DB\\ncorruption. Some work done during Apr 16-17 may have been lost.\\n\\n**Before starting work:**\\n1. Check if the task's goal is ALREADY satisfied (run the relevant checks)\\n2. Check `git log --all --grep=task:YOUR_TASK_ID` for prior commits\\n3. If complete, verify and mark done. If partial, continue. If not done, proceed.\\n\\n**DB change:** SciDEX now uses PostgreSQL. `get_db()` auto-detects via\\nSCIDEX_DB_BACKEND=postgres env var.\", \"_reset_at\": \"2026-04-18T06:29:22.046013+00:00\", \"_reset_from_status\": \"done\"}"},{"id":"2324c574-262e-4cf6-8846-89ff1d59ca1e","title":"[Senate] Database integrity check — verify FK consistency and data quality","description":"IMPORTANT: Before implementing, verify this work hasn't already been done. Check api.py routes, git log, and the live site. If already implemented, mark complete with summary explaining what already exists.\n\nCheck for orphaned records, NULL required fields, inconsistent counts. Fix what can be fixed.\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":75,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-19T11:18:22.325967+00:00","updated_at":"2026-04-23T09:36:35.080115+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/aa1c8ad8_f157_senate_ci_database_integrity_check_spec.md","provider":"codex","payload_json":"{\"requirements\": {\"coding\": 8, \"reasoning\": 7, \"safety\": 9}, \"_watchdog_repair_task_id\": \"37fad167-17e0-4de0-a961-8f3c950d0411\", \"_watchdog_repair_created_at\": \"2026-04-17T09:07:09.239908+00:00\", \"completion_shas\": [\"bd579f91e\"], \"completion_shas_checked_at\": \"2026-04-17T10:48:39.058065+00:00\", \"_reset_note\": \"This task was reset after a database incident on 2026-04-17.\\n\\n**Context:** SciDEX migrated from SQLite to PostgreSQL after recurring DB\\ncorruption. Some work done during Apr 16-17 may have been lost.\\n\\n**Before starting work:**\\n1. Check if the task's goal is ALREADY satisfied (run the relevant checks)\\n2. Check `git log --all --grep=task:YOUR_TASK_ID` for prior commits\\n3. If complete, verify and mark done. If partial, continue. If not done, proceed.\\n\\n**DB change:** SciDEX now uses PostgreSQL. `get_db()` auto-detects via\\nSCIDEX_DB_BACKEND=postgres env var.\", \"_reset_at\": \"2026-04-18T06:29:22.046013+00:00\", \"_reset_from_status\": \"done\"}"},{"id":"fa2dda36-7d28-4e5b-b40b-548587d40619","title":"[Senate] Investigate and fix Quest engine CI always returning no-op","description":"The [Senate] CI: Quest engine recurring task (80ffb77b, every-30-min) has been returning no-op for every observed run, wasting ~336 slot-runs/week. Investigate why the queue-low threshold is never triggered and either fix the logic or lower frequency to every-4h. See docs/planning/specs/senate_quest_engine_noop_fix_spec.md and resource audit docs/planning/specs/resource_intelligence_audit_2026_04_23.md","status":"done","priority":75,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-23T05:57:17.010168+00:00","updated_at":"2026-04-23T05:57:17.010168+00:00","summary":"","completion_notes":"Quest engine no-op is correct behavior. Queue depth (51) >= QUEUE_THRESHOLD (50) means engine correctly exits as healthy. Task ID 80ffb77b no longer exists in Orchestra DB. Engine logic is sound. [task:fa2dda36-7d28-4e5b-b40b-548587d40619]","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{}"},{"id":"e5e26199-f2e9-4aee-bebd-9d86f6abdc32","title":"[Senate] Compute Elo rating updates for 10 hypotheses after recent debate rounds","description":"Hypotheses involved in recent debate rounds haven't had their Elo ratings updated, meaning the tournament leaderboard is stale. For 10 hypotheses that appear in debate_sessions from the last 7 days without a corresponding elo_update (SELECT h.id, h.title, h.elo_rating FROM hypotheses h JOIN debate_sessions ds ON ds.analysis_id IN (SELECT analysis_id FROM analyses WHERE id IN (SELECT analysis_id FROM hypotheses WHERE id=h.id)) WHERE ds.created_at > NOW() - INTERVAL '7 days' AND h.last_elo_update < ds.created_at LIMIT 10): (1) collect debate outcome (quality_score from debate_sessions); (2) apply Glicko-2 rating update formula using existing tournament.py logic; (3) UPDATE hypotheses SET elo_rating=<new>, elo_rd=<new_rd>, last_elo_update=NOW() WHERE id=<id>; (4) emit elo_updated event. Verification: 10 hypotheses have updated elo_rating values; tournament leaderboard reflects new rankings.","status":"done","priority":75,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-22T22:43:15.351740+00:00","updated_at":"2026-04-22T22:43:15.351740+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{}"},{"id":"46acec17-66d1-4f5d-91fe-080916dbe5be","title":"[Senate] Standardize error responses — remove traceback and exception leakage","description":"Security review (task e3a707ac) found full stack traces and raw exception messages returned in HTTP responses.\n\nLocations to fix:\n- api.py:72259 — HTMLResponse with full traceback.format_exc() — return generic HTML error page; log server-side\n- api.py:41283 — traceback.format_exc()[:500] in dashboard error card — replace with generic message\n- api.py:58300 — traceback.format_exc()[:500] in contributor profile — generic message\n- api.py:3082 — HTTPException(500, f\"Database error: {str(e)}\") — generic detail\n- api.py:4828 — return {\"error\": f\"Quality gate check failed: {str(e)}\"} — generic message\n- api.py:4869 — JSONResponse error with str(e) — generic message\n- api.py:5053 — return {\"error\": f\"Quality gate enforcement failed: {str(e)}\"} — generic\n- api.py:5126 — HTTPException(500, f\"Error: {str(e)}\") — generic\n\nReplace str(e) and traceback.format_exc() in HTTP responses with \"Internal server error\". Use logger.exception() to preserve detail in logs. Do NOT remove the logging — only remove from HTTP responses.","status":"done","priority":75,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-21T10:18:41.874483+00:00","updated_at":"2026-04-21T10:18:41.874483+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{}"},{"id":"5917bb81-00d7-499d-84e9-6e5ababd1177","title":"[Senate] Security Manager: establish security review cadence and coordination protocol","description":"Set up recurring security management process:\n1. Create security_review table: id, review_type, findings_json, severity, status, reviewed_at\n2. Define review cadence: secret scan (daily), code review (weekly), infra review (monthly)\n3. Coordinate protocol: before any security change, check:\n   - Running tasks and worktrees (dont break active work)\n   - API health (dont take down the site)\n   - DB integrity (dont corrupt data)\n   - SSH access (NEVER lock out the operator)\n4. Flag bad practices found by other agents during code review\n5. Security findings feed into /senate dashboard\n6. Create security section on /quests page showing latest findings\nThis task should be re-created as recurring after completion.\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":75,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-21T10:14:11.082046+00:00","updated_at":"2026-04-21T10:14:11.082046+00:00","summary":"","completion_notes":"All acceptance criteria are met in the working tree:\n\n1. security_review table migration (migrations/077_add_security_review_table.py): CREATE TABLE with id, review_type (secret_scan|code_review|infra_review|manual), findings_json, severity (critical|high|medium|low|info), status (open|acknowledged|resolved|false_positive), reviewed_at, created_at + 3 indexes.\n\n2. Senate dashboard (/senate): security_section added in senate_page() ~line 43262 of api.py. Shows severity counts (critical/high/medium), open count, review cadence description (daily/weekly/monthly), recent findings table with severity colors.\n\n3. Quests page (/quests): quests_security_section added in quests_dashboard() ~line 60921 of api.py. Shows latest 5 findings, urgent count, link to Senate dashboard.\n\nBLOCKER: The /home/ubuntu/Orchestra/ filesystem is mounted read-only (EROFS). The Claude Code harness (Node.js) tries to mkdir /home/ubuntu/Orchestra/data/claude_creds/max_outlook/session-env before running any Bash command. This mkdir fails with EROFS, making ALL Bash tool calls fail immediately. No git commands can be run.\n\nOPERATOR RECOVERY:\n  cd /home/ubuntu/scidex/.orchestra-worktrees/task-5917bb81-00d7-499d-84e9-6e5ababd1177\n  git fetch origin main && git rebase origin/main\n  git add api.py migrations/077_add_security_review_table.py docs/planning/specs/5917bb81-00d7-499d-84e9-6e5ababd1177_spec.md\n  git commit -m \"[Senate] Security Manager: add security_review table, senate/quests integration [task:5917bb81-00d7-499d-84e9-6e5ababd1177]\"\n  git push origin HEAD\n\nINFRA FIX: Remount /home/ubuntu/Orchestra/ read-write, or fix the Orchestra credential harness to not require writes to that path during Bash tool initialization.","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"claude","payload_json":"{\"requirements\": {\"coding\": 9, \"safety\": 10}}"},{"id":"cae44148-36e7-4018-801e-36e42ed35d8e","title":"[Senate] Database integrity check — verify FK consistency and data quality","description":"IMPORTANT: Before implementing, verify this work hasn't already been done. Check api.py routes, git log, and the live site. If already implemented, mark complete with summary explaining what already exists.\n\nCheck for orphaned records, NULL required fields, inconsistent counts. Fix what can be fixed.\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":75,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-20T14:08:32.612075+00:00","updated_at":"2026-04-20T14:08:32.612075+00:00","summary":"","completion_notes":"SQLite is retired as of 2026-04-20. This task verified PostgreSQL FK consistency instead. PostgreSQL FK constraints are enforced at DB level for market_transactions and hypothesis_predictions (0 orphans). However, artifact_links and price_history lack FK constraints, resulting in 119,809 and 100 orphans respectively. artifact_links uses text IDs but has no FK to artifacts table. Needs schema fix to add FK constraints and data cleanup for existing orphans.","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/86c48eaa_senate_db_fk_integrity_spec.md","provider":"claude","payload_json":"{\"requirements\": {\"coding\": 8, \"reasoning\": 8, \"analysis\": 8}, \"completion_shas\": [\"698a04b04\"], \"completion_shas_checked_at\": \"2026-04-20T14:08:32.554066+00:00\", \"_reset_note\": \"This task was reset after a database incident on 2026-04-17.\\n\\n**Context:** SciDEX migrated from SQLite to PostgreSQL after recurring DB\\ncorruption. Some work done during Apr 16-17 may have been lost.\\n\\n**Before starting work:**\\n1. Check if the task's goal is ALREADY satisfied (run the relevant checks)\\n2. Check `git log --all --grep=task:YOUR_TASK_ID` for prior commits\\n3. If complete, verify and mark done. If partial, continue. If not done, proceed.\\n\\n**DB change:** SciDEX now uses PostgreSQL. `get_db()` auto-detects via\\nSCIDEX_DB_BACKEND=postgres env var.\", \"_reset_at\": \"2026-04-18T06:29:22.046013+00:00\", \"_reset_from_status\": \"done\"}"},{"id":"86c48eaa-54ff-47ac-921f-25482cf12023","title":"[Senate] Database integrity check — verify FK consistency and data quality","description":"IMPORTANT: Before implementing, verify this work hasn't already been done. Check api.py routes, git log, and the live site. If already implemented, mark complete with summary explaining what already exists.\n\nCheck for orphaned records, NULL required fields, inconsistent counts. Fix what can be fixed.\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":75,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-19T11:20:16.647235+00:00","updated_at":"2026-04-19T11:20:16.647235+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"claude","payload_json":"{\"requirements\": {\"coding\": 8, \"reasoning\": 8, \"analysis\": 8}, \"_reset_note\": \"This task was reset after a database incident on 2026-04-17.\\n\\n**Context:** SciDEX migrated from SQLite to PostgreSQL after recurring DB\\ncorruption. Some work done during Apr 16-17 may have been lost.\\n\\n**Before starting work:**\\n1. Check if the task's goal is ALREADY satisfied (run the relevant checks)\\n2. Check `git log --all --grep=task:YOUR_TASK_ID` for prior commits\\n3. If complete, verify and mark done. If partial, continue. If not done, proceed.\\n\\n**DB change:** SciDEX now uses PostgreSQL. `get_db()` auto-detects via\\nSCIDEX_DB_BACKEND=postgres env var.\", \"_reset_at\": \"2026-04-18T06:29:22.046013+00:00\", \"_reset_from_status\": \"done\"}"},{"id":"c881d27e-0fe4-454e-9953-2d182913f725","title":"[Senate] Codebase consolidation — merge fragmented scripts into clean framework","description":"Consolidate the growing collection of standalone scripts:\n- import_*.py scripts -> unified import framework with registry\n- populate_*.py scripts -> unified data pipeline\n- migrations/*.py -> ordered migration runner with version tracking\n- recalibrate_scores.py, compute_convergence.py, etc. -> scheduled tasks framework\nCRITICAL: Check all running worktrees and processes before modifying any script.\nCRITICAL: Never delete data or code without verifying it is truly unused.\nCRITICAL: Git commit each consolidation step separately for easy rollback.\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":75,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-19T11:13:42.701135+00:00","updated_at":"2026-04-19T11:13:42.701135+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{\"completion_shas\": [\"75f3726af\", \"4aba95e37\"], \"completion_shas_checked_at\": \"2026-04-17T10:36:45.272869+00:00\", \"_reset_note\": \"This task was reset after a database incident on 2026-04-17.\\n\\n**Context:** SciDEX migrated from SQLite to PostgreSQL after recurring DB\\ncorruption. Some work done during Apr 16-17 may have been lost.\\n\\n**Before starting work:**\\n1. Check if the task's goal is ALREADY satisfied (run the relevant checks)\\n2. Check `git log --all --grep=task:YOUR_TASK_ID` for prior commits\\n3. If complete, verify and mark done. If partial, continue. If not done, proceed.\\n\\n**DB change:** SciDEX now uses PostgreSQL. `get_db()` auto-detects via\\nSCIDEX_DB_BACKEND=postgres env var.\", \"_reset_at\": \"2026-04-18T06:29:22.046013+00:00\", \"_reset_from_status\": \"done\"}"},{"id":"t-kg-modification-log","title":"KG modification audit log","description":"kg_modifications table logs all KG changes with before/after state, contradictions found, approval status. Enables rollback.\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":75,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-19T11:06:29.837393+00:00","updated_at":"2026-04-19T11:06:29.837393+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"claude","payload_json":"{\"_reset_note\": \"This task was reset after a database incident on 2026-04-17.\\n\\n**Context:** SciDEX migrated from SQLite to PostgreSQL after recurring DB\\ncorruption. Some work done during Apr 16-17 may have been lost.\\n\\n**Before starting work:**\\n1. Check if the task's goal is ALREADY satisfied (run the relevant checks)\\n2. Check `git log --all --grep=task:YOUR_TASK_ID` for prior commits\\n3. If complete, verify and mark done. If partial, continue. If not done, proceed.\\n\\n**DB change:** SciDEX now uses PostgreSQL. `get_db()` auto-detects via\\nSCIDEX_DB_BACKEND=postgres env var.\", \"_reset_at\": \"2026-04-18T06:29:22.046013+00:00\", \"_reset_from_status\": \"done\"}"},{"id":"ee6448a7-03a6-43a1-b2e2-6044955ab7be","title":"[Senate] Add convergence monitoring dashboard section — track hypothesis duplication, score drift, and system progress metrics","description":"Add convergence monitoring to /senate: (1) Detect duplicate/near-duplicate hypotheses by title similarity, (2) Track score drift over time, (3) Show global progress metrics (new hypotheses/day, KG growth rate, debate throughput). Surface as a new dashboard section on the senate page.\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":75,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-19T11:05:22.220114+00:00","updated_at":"2026-04-19T11:05:22.220114+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/ee6448a7_03a_spec.md","provider":"any","payload_json":"{\"_reset_note\": \"This task was reset after a database incident on 2026-04-17.\\n\\n**Context:** SciDEX migrated from SQLite to PostgreSQL after recurring DB\\ncorruption. Some work done during Apr 16-17 may have been lost.\\n\\n**Before starting work:**\\n1. Check if the task's goal is ALREADY satisfied (run the relevant checks)\\n2. Check `git log --all --grep=task:YOUR_TASK_ID` for prior commits\\n3. If complete, verify and mark done. If partial, continue. If not done, proceed.\\n\\n**DB change:** SciDEX now uses PostgreSQL. `get_db()` auto-detects via\\nSCIDEX_DB_BACKEND=postgres env var.\", \"_reset_at\": \"2026-04-18T06:29:22.046013+00:00\", \"_reset_from_status\": \"done\"}"},{"id":"85a95b9b-3b1f-46de-91b4-0d2874b1e976","title":"[Senate] Create governance dashboard for edit review and approval workflows","description":"Build governance mechanisms for content quality control:\n- Edit review queue: show pending edits that need approval (for high-impact changes)\n- Approval workflow: contributor submits -> reviewer approves -> change applied\n- Auto-approve low-risk changes (typos, minor edits by trusted actors)\n- Flag high-risk changes (score modifications, evidence deletions, KG edge removals)\n- /senate/governance page showing pending reviews, recent approvals, flagged items\n- Actor reputation scores based on approval rate and edit quality\n- Make all histories browsable at /senate/history with filters\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":75,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-19T11:02:39.724851+00:00","updated_at":"2026-04-19T11:02:39.724851+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{\"_reset_note\": \"This task was reset after a database incident on 2026-04-17.\\n\\n**Context:** SciDEX migrated from SQLite to PostgreSQL after recurring DB\\ncorruption. Some work done during Apr 16-17 may have been lost.\\n\\n**Before starting work:**\\n1. Check if the task's goal is ALREADY satisfied (run the relevant checks)\\n2. Check `git log --all --grep=task:YOUR_TASK_ID` for prior commits\\n3. If complete, verify and mark done. If partial, continue. If not done, proceed.\\n\\n**DB change:** SciDEX now uses PostgreSQL. `get_db()` auto-detects via\\nSCIDEX_DB_BACKEND=postgres env var.\", \"_reset_at\": \"2026-04-18T06:29:22.046013+00:00\", \"_reset_from_status\": \"done\"}"},{"id":"f0fa02ea-cbcd-43e9-830e-3b2d04588286","title":"[Senate] Add task quality review — auto-evaluate completed task outputs","description":"For completed tasks, check: did api.py syntax pass? did new content get added to DB? are there undefined variable errors? Score task quality 0-1.\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":75,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-19T11:00:21.861428+00:00","updated_at":"2026-04-19T11:00:21.861428+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{\"_reset_note\": \"This task was reset after a database incident on 2026-04-17.\\n\\n**Context:** SciDEX migrated from SQLite to PostgreSQL after recurring DB\\ncorruption. Some work done during Apr 16-17 may have been lost.\\n\\n**Before starting work:**\\n1. Check if the task's goal is ALREADY satisfied (run the relevant checks)\\n2. Check `git log --all --grep=task:YOUR_TASK_ID` for prior commits\\n3. If complete, verify and mark done. If partial, continue. If not done, proceed.\\n\\n**DB change:** SciDEX now uses PostgreSQL. `get_db()` auto-detects via\\nSCIDEX_DB_BACKEND=postgres env var.\", \"_reset_at\": \"2026-04-18T06:29:22.046013+00:00\", \"_reset_from_status\": \"done\"}"},{"id":"1867566b-bdf2-4632-affd-d29f70f3fb8f","title":"[Senate] Automated duplicate task detection and cleanup","description":"Create a script that runs periodically to detect and close duplicate tasks. Use title similarity (>60% word overlap) among open/running tasks. Keep the oldest, close newer duplicates. Also close any P90+ bug tasks that reference endpoints returning 200.\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":73,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-19T11:23:29.735502+00:00","updated_at":"2026-04-19T11:23:29.735502+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{\"_reset_note\": \"This task was reset after a database incident on 2026-04-17.\\n\\n**Context:** SciDEX migrated from SQLite to PostgreSQL after recurring DB\\ncorruption. Some work done during Apr 16-17 may have been lost.\\n\\n**Before starting work:**\\n1. Check if the task's goal is ALREADY satisfied (run the relevant checks)\\n2. Check `git log --all --grep=task:YOUR_TASK_ID` for prior commits\\n3. If complete, verify and mark done. If partial, continue. If not done, proceed.\\n\\n**DB change:** SciDEX now uses PostgreSQL. `get_db()` auto-detects via\\nSCIDEX_DB_BACKEND=postgres env var.\", \"_reset_at\": \"2026-04-18T06:29:22.046013+00:00\", \"_reset_from_status\": \"done\"}"},{"id":"65655b19-610a-420c-916a-d0536639349f","title":"[Senate] Fix quality_gate_results accumulation bug — add deduplication or expiration","description":"The quality_gate_results table accumulates unbounded rows. Every call to /api/quality-gates (api.py:4700-4729) appends 14 new rows with task_id='system-check' with no deduplication. After ~168 scans this produced 2355 'fail' rows for the same 14 recurring data quality checks.\n\nFix options (pick one):\n1. Change INSERT to UPSERT keyed on (gate_name, date_trunc('day', NOW())) so each gate type gets at most one row per day.\n2. Add a DELETE of rows older than 7 days inside the same transaction, before the INSERT.\n3. Add a nightly cron or background task in api.py that prunes quality_gate_results WHERE created_at < NOW() - INTERVAL '7 days'.\n\nAcceptance criteria:\n- Running /api/quality-gates 100 times does not grow quality_gate_results by more than ~14 rows\n- Existing Senate dashboard code still works (it queries the table)\n- quest_engine.py gap predicate still fires correctly when real failures exist\n\nTriage source: task:7828a688-1494-4465-a9b3-c128f94879a0","status":"done","priority":72,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-21T20:16:10.669159+00:00","updated_at":"2026-04-21T20:16:10.669159+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{}"},{"id":"98c6c423-6d32-4090-ae73-6d6ddae3d155","title":"[Senate] Hourly knowledge growth snapshot collection","description":"Run scidex.senate.metrics.run_snapshot_cycle() every hour to collect knowledge_snapshots. Tracks: analyses_count, hypotheses_count (quality-adjusted with citations), kg_edges_count (valid only), papers_count, wiki_pages_count, causal_edges_count. Computes growth rates, detects stalls/regressions, and projects milestones.","status":"blocked","priority":70,"task_type":"recurring","frequency":"hourly","assigned_slot":"","started_at":null,"completed_at":"2026-04-22T23:42:02.624403+00:00","updated_at":"2026-04-24T13:13:28.664461+00:00","summary":"","completion_notes":"Auto-release: recurring task had no work this cycle","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{\"_stall_skip_providers\": [\"glm\"], \"requirements\": {\"coding\": 7, \"reasoning\": 7, \"safety\": 8}}"},{"id":"19160b37-f223-4ae5-81e7-fa73449b15be","title":"[Senate] Implement external agent registration and API access","description":"Allow external AI agents and services to interact with SciDEX:\n- External agent registration: generate API keys with scoped permissions\n- Rate limiting per actor (token bucket algorithm)\n- API authentication middleware for all write endpoints\n- Webhook system: notify external agents of new hypotheses, analyses, etc.\n- OpenAPI spec generation for external clients\n- Usage tracking per external agent (tokens consumed, edits made)\n- /senate/actors page listing all registered agents and users with activity stats\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":70,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-20T23:01:18.999299+00:00","updated_at":"2026-04-20T23:01:18.999299+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{\"_reset_note\": \"This task was reset after a database incident on 2026-04-17.\\n\\n**Context:** SciDEX migrated from SQLite to PostgreSQL after recurring DB\\ncorruption. Some work done during Apr 16-17 may have been lost.\\n\\n**Before starting work:**\\n1. Check if the task's goal is ALREADY satisfied (run the relevant checks)\\n2. Check `git log --all --grep=task:YOUR_TASK_ID` for prior commits\\n3. If complete, verify and mark done. If partial, continue. If not done, proceed.\\n\\n**DB change:** SciDEX now uses PostgreSQL. `get_db()` auto-detects via\\nSCIDEX_DB_BACKEND=postgres env var.\", \"_reset_at\": \"2026-04-18T06:29:22.046013+00:00\", \"_reset_from_status\": \"done\"}"},{"id":"b68277b4-52c1-4352-bd73-41f241cbefc2","title":"[Senate] Add site/figures to gitignore and fix figure_generator DB commit","description":"\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":70,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-20T16:25:25.569443+00:00","updated_at":"2026-04-20T16:25:25.569443+00:00","summary":"","completion_notes":"Verification failed - origin/main already has both fixes:\n1. .gitignore line 30: `site/figures` (no trailing slash, but effective)\n2. figure_generator.py has batch commit in generate_analysis_figures() and explicit db.commit() in __main__\n\nThe work was already on main via commit faa72cd9d. Branch is clean, nothing to push.","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"docs/planning/specs/b68277b4_52c_spec.md","provider":"any","payload_json":"{\"_reset_note\": \"This task was reset after a database incident on 2026-04-17.\\n\\n**Context:** SciDEX migrated from SQLite to PostgreSQL after recurring DB\\ncorruption. Some work done during Apr 16-17 may have been lost.\\n\\n**Before starting work:**\\n1. Check if the task's goal is ALREADY satisfied (run the relevant checks)\\n2. Check `git log --all --grep=task:YOUR_TASK_ID` for prior commits\\n3. If complete, verify and mark done. If partial, continue. If not done, proceed.\\n\\n**DB change:** SciDEX now uses PostgreSQL. `get_db()` auto-detects via\\nSCIDEX_DB_BACKEND=postgres env var.\", \"_reset_at\": \"2026-04-18T06:29:22.046013+00:00\", \"_reset_from_status\": \"done\"}"},{"id":"c461cbaa-879e-45c6-b47d-0ae33f34b63f","title":"[Senate] Periodic quest-resource cross-review — auto-correlate task output with resource costs","description":"Create a recurring mechanism that cross-references Quest 6 (Resource Economics) with Quest 12 (Quest Tracking):\n- For each completed task, estimate tokens consumed and correlate with resource_usage table\n- Compute cost-per-task and cost-per-quest metrics\n- Flag quests with high cost but low output (potential waste)\n- Flag quests with high output but low cost (efficient, should get more resources)\n- Store cross-review results in quest_resource_reviews table\n- Display on both /quests and /resources pages\nThis should run as a periodic task (daily or after every N task completions).\n\n\n## REOPENED TASK — CRITICAL CONTEXT\n\nThis task was previously marked 'done' but the audit could not verify\nthe work actually landed on main. The original work may have been:\n- Lost to an orphan branch / failed push\n- Only a spec-file edit (no code changes)\n- Already addressed by other agents in the meantime\n- Made obsolete by subsequent work\n\n**Before doing anything else:**\n\n1. **Re-evaluate the task in light of CURRENT main state.** Read the\n   spec and the relevant files on origin/main NOW. The original task\n   may have been written against a state of the code that no longer\n   exists.\n\n2. **Verify the task still advances SciDEX's aims.** If the system\n   has evolved past the need for this work (different architecture,\n   different priorities), close the task with reason \"obsolete: <why>\"\n   instead of doing it.\n\n3. **Check if it's already done.** Run `git log --grep='<task-id>'`\n   and read the related commits. If real work landed, complete the\n   task with `--no-sha-check --summary 'Already done in <commit>'`.\n\n4. **Make sure your changes don't regress recent functionality.** Many\n   agents have been working on this codebase. Before committing, run\n   `git log --since='24 hours ago' -- <files-you-touch>` to see what\n   changed in your area, and verify you don't undo any of it.\n\n5. **Stay scoped.** Only do what this specific task asks for. Do not\n   refactor, do not \"fix\" unrelated issues, do not add features that\n   weren't requested. Scope creep at this point is regression risk.\n\nIf you cannot do this task safely (because it would regress, conflict\nwith current direction, or the requirements no longer apply), escalate\nvia `orchestra escalate` with a clear explanation instead of committing.\n","status":"done","priority":70,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-20T16:15:10.413103+00:00","updated_at":"2026-04-20T16:15:10.413103+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{\"_reset_note\": \"This task was reset after a database incident on 2026-04-17.\\n\\n**Context:** SciDEX migrated from SQLite to PostgreSQL after recurring DB\\ncorruption. Some work done during Apr 16-17 may have been lost.\\n\\n**Before starting work:**\\n1. Check if the task's goal is ALREADY satisfied (run the relevant checks)\\n2. Check `git log --all --grep=task:YOUR_TASK_ID` for prior commits\\n3. If complete, verify and mark done. If partial, continue. If not done, proceed.\\n\\n**DB change:** SciDEX now uses PostgreSQL. `get_db()` auto-detects via\\nSCIDEX_DB_BACKEND=postgres env var.\", \"_reset_at\": \"2026-04-18T06:29:22.046013+00:00\", \"_reset_from_status\": \"done\"}"},{"id":"2bbe7197-3b67-4e02-b328-310c1aadb9c3","title":"[Senate] Fix scripts/quality_gates.py SQLite placeholders for PostgreSQL","description":"scripts/quality_gates.py uses SQLite-style ? parameter placeholders in all db.execute() calls (log_gate_result, init_quality_gates_table, gate_duplicate_task_check). PostgreSQL via psycopg2 requires %s placeholders. Any invocation will raise psycopg2 ProgrammingError.\n\nFix: replace all ? with %s in scripts/quality_gates.py db.execute() calls. Also update any comment referencing 'SQLite limitation' (e.g., line ~196).\n\nAcceptance criteria:\n- python3 scripts/quality_gates.py pre-merge <task-id> runs without psycopg2 placeholder errors\n- All ? placeholders in db.execute() calls replaced with %s\n\nTriage source: task:7828a688-1494-4465-a9b3-c128f94879a0","status":"done","priority":60,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-21T19:23:41.176662+00:00","updated_at":"2026-04-21T19:23:41.176662+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{\"completion_shas\": [\"4aacfe4f8988bfff40f6e4bd95cfb0f7959a4804\"], \"completion_shas_checked_at\": \"2026-04-21T19:23:41.155386+00:00\"}"},{"id":"aebcd652-7cd0-4019-92da-ca70a53a10a3","title":"[Senate] Add HTTP security headers middleware to api.py","description":"Security review (task e3a707ac) found no security headers set by the application.\n\nFix: Add a Starlette BaseHTTPMiddleware that sets on every response:\n- X-Content-Type-Options: nosniff\n- X-Frame-Options: SAMEORIGIN\n- X-XSS-Protection: 1; mode=block\n- Referrer-Policy: strict-origin-when-cross-origin\n\nExample:\n```python\nfrom starlette.middleware.base import BaseHTTPMiddleware\nclass SecurityHeadersMiddleware(BaseHTTPMiddleware):\n    async def dispatch(self, request, call_next):\n        response = await call_next(request)\n        response.headers[\"X-Content-Type-Options\"] = \"nosniff\"\n        response.headers[\"X-Frame-Options\"] = \"SAMEORIGIN\"\n        response.headers[\"X-XSS-Protection\"] = \"1; mode=block\"\n        response.headers[\"Referrer-Policy\"] = \"strict-origin-when-cross-origin\"\n        return response\napp.add_middleware(SecurityHeadersMiddleware)\n```\n\nVerify with: curl -I http://localhost:8000/\nDo NOT add HSTS (TLS terminated externally by nginx). Do NOT break CORS or existing API behavior.","status":"done","priority":60,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-21T10:11:57.830844+00:00","updated_at":"2026-04-21T10:11:57.830844+00:00","summary":"","completion_notes":"Auto-completed by supervisor after successful deploy to main","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{}"},{"id":"f61e6b0d-141c-4417-940a-c539cb33a5ac","title":"[Senate] Clean up orphaned referential integrity records (debate_rounds, agent_performance, knowledge_edges)","description":"Three tables have orphaned rows that cause recurring quality gate failures on every /api/quality-gates scan:\n- debate_rounds: rows where session_id has no matching debate_sessions row\n- agent_performance: rows where analysis_id has no matching analyses row\n- knowledge_edges: rows where analysis_id has no matching analyses row\n\nSteps:\n1. COUNT orphaned rows in each table (before record)\n2. DELETE orphaned rows (use DELETE ... WHERE NOT EXISTS subquery matching api.py:4585-4623)\n3. Verify quality gates for these three types show 0 count after cleanup\n4. Consider FK constraints or ON DELETE CASCADE to prevent future orphans\n\nAcceptance criteria:\n- orphaned_debate_rounds, orphaned_agent_performance, orphaned_knowledge_edges gate counts all = 0 after cleanup\n- Before/after row counts logged in spec\n\nTriage source: task:7828a688-1494-4465-a9b3-c128f94879a0","status":"done","priority":55,"task_type":"one_shot","frequency":"","assigned_slot":"","started_at":null,"completed_at":"2026-04-21T19:32:42.023791+00:00","updated_at":"2026-04-21T19:32:42.023791+00:00","summary":"","completion_notes":"","last_error":"","time_estimate_hours":0.0,"completion_count":0,"spec_path":"","provider":"any","payload_json":"{}"},{"id":"3eba8754-456c-4940-a642-de78b9485d0e","title":"[Senate] Visual regression testing","description":"Run visual inspector to detect broken pages and UI regressions","status":"blocked","priority":35,"task_type":"recurring","frequency":"daily","assigned_slot":"","started_at":null,"completed_at":"2026-04-22T14:51:53.872372+00:00","updated_at":"2026-04-24T13:13:26.781505+00:00","summary":"","completion_notes":"Auto-release: recurring task had no work this cycle","last_error":"Command timed out after 300s","time_estimate_hours":0.0,"completion_count":18,"spec_path":"docs/planning/specs/3eba8754_456_spec.md","provider":"any","payload_json":"{\"command\": \"python3 /home/ubuntu/scidex/visual_inspector.py\", \"timeout\": 300, \"working_dir\": \"/home/ubuntu/scidex\", \"success_exit_codes\": [0], \"completion_shas\": [\"380ba6c4feb8a1ea449b49044dadec0f0025c041\"], \"completion_shas_checked_at\": \"2026-04-12T23:53:44.856334+00:00\", \"completion_shas_missing\": [\"92e8909e82996c8eb3338d387a04e3f296551d4a\", \"1663bf2ee414a0fe25c9a40e4b6bc66ec7810569\", \"544791ef6637379f2da740cf3152a034d04e06e6\", \"54fc226e6c127fee34738f25623fda6ce302e2be\"], \"requirements\": {\"coding\": 5}}"}],"reviews":[{"task_count":3,"total_tokens":150000.0,"total_cost":0.45,"output_score":22418.2133,"efficiency_rating":"normal","reviewed_at":"2026-04-20T16:13:25.817325+00:00"}],"effectiveness":{"task_count":3,"total_lines_added":0,"total_lines_removed":0,"total_files_modified":0,"total_hypotheses":1004,"total_kg_edges":662370,"total_papers":15281,"total_tokens":150000.0,"total_duration":819155.287854,"avg_impact":1120910.6666666667,"avg_effectiveness":22418.213333333333},"spec_content":"---\ntitle: \"Quest: Senate\"\ndescription: \"Governance & quality gates — agent performance tracking, work audit trails, convergence monitoring, quality control. Includes agent registry, task accountability, output verification, and governance d\"\ntype: quest\nlayer: Senate\npriority: 60\nstatus: active\nquest_id: 58079891-7a5\nspec_path: docs/planning/specs/quest_senate_spec.md\n---\n\n# Quest: Senate\n\n**Layer:** Senate  \n**Priority:** P60  \n**Status:** active  \n**Tasks:** 447 total (73 done, 1 open)\n\n## Vision\n\nThe Senate is SciDEX's governance layer — it ensures quality, accountability, and integrity\nacross all five layers. The Senate operates through three mechanisms:\n\n### 1. Quality Gates (Automated Enforcement)\nMinimum-bar checks that prevent low-quality artifacts from entering the system.\nCurrently covers hypotheses (evidence, score, specificity gates — 639 passes, 158 failures).\nExpanding to all artifact types via q-artifact-quality-markets (exch-qm-05-GATE).\n\n### 2. Schema Governance (Agent-Driven Evolution)\nArtifact schemas evolve through Senate proposals — agents propose changes, debate them,\nand vote. Approved changes generate validated migrations. See q-schema-governance.\n\n### 3. Quality Oversight (Monitoring & Intervention)\nThe unified quality dashboard aggregates market prices, debate outcomes, gate results,\nand usage metrics. The Senate monitors for:\n- Artifacts with declining quality (price dropping)\n- Contested artifacts (active debates)\n- Gate failure patterns (systematic quality issues)\n- Agent accountability (who produces quality vs garbage)\n\n### The Quality Triangle\nThe Senate works with the Exchange (markets) and Agora (debates):\n- **Markets** (Exchange) provide continuous quality signals\n- **Debates** (Agora) resolve quality disputes\n- **Gates** (Senate) enforce minimum standards\n- **Governance** (Senate) oversees the whole system and evolves the rules\n\n### Related Quests\n- **Schema Governance** (q-schema-governance, P88): Agent-driven schema evolution\n- **Artifact Quality Markets** (q-artifact-quality-markets, P92): Market-based quality governance\n- **Artifact Debates** (q-artifact-debates, P91): Debate as quality arbitration\n- **Work Governance** (q-work-governance, P78): Comprehensive work tracking\n\n## Open Tasks\n\n### Current\n- [ ] [Senate] CI: Run site health check and fix broken links (P80)\n\n### Quality Governance (from related quests)\n- [ ] Quality gates for all artifact types (P91) — exch-qm-05-GATE\n- [ ] Schema registry with versions (P88) — sen-sg-01-SREG\n- [ ] Processing step lineage (P87) — sen-sg-06-PROC\n- [ ] Schema proposal system (P86) — sen-sg-02-PROP\n- [ ] Schema validation engine (P85) — sen-sg-03-VALD\n- [ ] Unified quality signals dashboard (P85) — exch-qm-07-DASH\n- [ ] Artifact quality profile dashboard (P84) — agr-ad-05-PROF\n- [ ] Auto-migration generation (P83) — sen-sg-04-MIGR\n- [ ] Domain scope enforcement (P82) — sen-sg-05-SCOP\n\n## Success Criteria\n\n- [ ] Quality gates operational for all artifact types (not just hypotheses)\n- [ ] Schema governance processing proposals through the full pipeline\n- [ ] Unified quality dashboard providing actionable oversight\n- [ ] Agent accountability visible through performance tracking\n- [ ] All open tasks completed and verified\n\n## Work Log\n\n_No entries yet._\n","spec_html":"<div style=\"font-size:0.85rem\"><p style=\"color:#bbb;line-height:1.6;margin:0.4rem 0\"><h2 style=\"color:#4fc3f7;margin:1.5rem 0 0.6rem;font-size:1.2rem;font-weight:700\">Quest: Senate</h2></p><p style=\"color:#bbb;line-height:1.6;margin:0.4rem 0\"><strong style=\"color:#e0e0e0\">Layer:</strong> Senate  \n<strong style=\"color:#e0e0e0\">Priority:</strong> P60  \n<strong style=\"color:#e0e0e0\">Status:</strong> active  \n<strong style=\"color:#e0e0e0\">Tasks:</strong> 447 total (73 done, 1 open)</p><p style=\"color:#bbb;line-height:1.6;margin:0.4rem 0\"><h3 style=\"color:#4fc3f7;margin:1.4rem 0 0.5rem;font-size:1.1rem;font-weight:700;border-bottom:2px solid rgba(79,195,247,0.3);padding-bottom:0.2rem\">Vision</h3></p><p style=\"color:#bbb;line-height:1.6;margin:0.4rem 0\">The Senate is SciDEX&#x27;s governance layer — it ensures quality, accountability, and integrity<br>across all five layers. The Senate operates through three mechanisms:</p><p style=\"color:#bbb;line-height:1.6;margin:0.4rem 0\"><h4 style=\"color:#e0e0e0;margin:1.2rem 0 0.4rem;font-size:1rem;font-weight:600;border-bottom:1px solid rgba(255,255,255,0.08);padding-bottom:0.2rem\">1. Quality Gates (Automated Enforcement)</h4>\nMinimum-bar checks that prevent low-quality artifacts from entering the system.<br>Currently covers hypotheses (evidence, score, specificity gates — 639 passes, 158 failures).<br>Expanding to all artifact types via q-artifact-quality-markets (exch-qm-05-GATE).</p><p style=\"color:#bbb;line-height:1.6;margin:0.4rem 0\"><h4 style=\"color:#e0e0e0;margin:1.2rem 0 0.4rem;font-size:1rem;font-weight:600;border-bottom:1px solid rgba(255,255,255,0.08);padding-bottom:0.2rem\">2. Schema Governance (Agent-Driven Evolution)</h4>\nArtifact schemas evolve through Senate proposals — agents propose changes, debate them,<br>and vote. Approved changes generate validated migrations. See q-schema-governance.</p><p style=\"color:#bbb;line-height:1.6;margin:0.4rem 0\"><h4 style=\"color:#e0e0e0;margin:1.2rem 0 0.4rem;font-size:1rem;font-weight:600;border-bottom:1px solid rgba(255,255,255,0.08);padding-bottom:0.2rem\">3. Quality Oversight (Monitoring &amp; Intervention)</h4>\nThe unified quality dashboard aggregates market prices, debate outcomes, gate results,<br>and usage metrics. The Senate monitors for:\n<ul style=\"padding-left:1.5rem;margin:0.4rem 0\"><li style=\"margin:0.15rem 0;color:#bbb\">Artifacts with declining quality (price dropping)</li>\n<li style=\"margin:0.15rem 0;color:#bbb\">Contested artifacts (active debates)</li>\n<li style=\"margin:0.15rem 0;color:#bbb\">Gate failure patterns (systematic quality issues)</li>\n<li style=\"margin:0.15rem 0;color:#bbb\">Agent accountability (who produces quality vs garbage)</li>\n</ul>\n<h4 style=\"color:#e0e0e0;margin:1.2rem 0 0.4rem;font-size:1rem;font-weight:600;border-bottom:1px solid rgba(255,255,255,0.08);padding-bottom:0.2rem\">The Quality Triangle</h4>\nThe Senate works with the Exchange (markets) and Agora (debates):\n<ul style=\"padding-left:1.5rem;margin:0.4rem 0\"><li style=\"margin:0.15rem 0;color:#bbb\"><strong style=\"color:#e0e0e0\">Markets</strong> (Exchange) provide continuous quality signals</li>\n<li style=\"margin:0.15rem 0;color:#bbb\"><strong style=\"color:#e0e0e0\">Debates</strong> (Agora) resolve quality disputes</li>\n<li style=\"margin:0.15rem 0;color:#bbb\"><strong style=\"color:#e0e0e0\">Gates</strong> (Senate) enforce minimum standards</li>\n<li style=\"margin:0.15rem 0;color:#bbb\"><strong style=\"color:#e0e0e0\">Governance</strong> (Senate) oversees the whole system and evolves the rules</li>\n</ul>\n<h4 style=\"color:#e0e0e0;margin:1.2rem 0 0.4rem;font-size:1rem;font-weight:600;border-bottom:1px solid rgba(255,255,255,0.08);padding-bottom:0.2rem\">Related Quests</h4>\n<ul style=\"padding-left:1.5rem;margin:0.4rem 0\"><li style=\"margin:0.15rem 0;color:#bbb\"><strong style=\"color:#e0e0e0\">Schema Governance</strong> (q-schema-governance, P88): Agent-driven schema evolution</li>\n<li style=\"margin:0.15rem 0;color:#bbb\"><strong style=\"color:#e0e0e0\">Artifact Quality Markets</strong> (q-artifact-quality-markets, P92): Market-based quality governance</li>\n<li style=\"margin:0.15rem 0;color:#bbb\"><strong style=\"color:#e0e0e0\">Artifact Debates</strong> (q-artifact-debates, P91): Debate as quality arbitration</li>\n<li style=\"margin:0.15rem 0;color:#bbb\"><strong style=\"color:#e0e0e0\">Work Governance</strong> (q-work-governance, P78): Comprehensive work tracking</li>\n</ul>\n<h3 style=\"color:#4fc3f7;margin:1.4rem 0 0.5rem;font-size:1.1rem;font-weight:700;border-bottom:2px solid rgba(79,195,247,0.3);padding-bottom:0.2rem\">Open Tasks</h3></p><p style=\"color:#bbb;line-height:1.6;margin:0.4rem 0\"><h4 style=\"color:#e0e0e0;margin:1.2rem 0 0.4rem;font-size:1rem;font-weight:600;border-bottom:1px solid rgba(255,255,255,0.08);padding-bottom:0.2rem\">Current</h4>\n<div style=\"margin:0.2rem 0;color:#bbb\">&#9744; [Senate] CI: Run site health check and fix broken links (P80)</div></p><p style=\"color:#bbb;line-height:1.6;margin:0.4rem 0\"><h4 style=\"color:#e0e0e0;margin:1.2rem 0 0.4rem;font-size:1rem;font-weight:600;border-bottom:1px solid rgba(255,255,255,0.08);padding-bottom:0.2rem\">Quality Governance (from related quests)</h4>\n<div style=\"margin:0.2rem 0;color:#bbb\">&#9744; Quality gates for all artifact types (P91) — exch-qm-05-GATE</div>\n<div style=\"margin:0.2rem 0;color:#bbb\">&#9744; Schema registry with versions (P88) — sen-sg-01-SREG</div>\n<div style=\"margin:0.2rem 0;color:#bbb\">&#9744; Processing step lineage (P87) — sen-sg-06-PROC</div>\n<div style=\"margin:0.2rem 0;color:#bbb\">&#9744; Schema proposal system (P86) — sen-sg-02-PROP</div>\n<div style=\"margin:0.2rem 0;color:#bbb\">&#9744; Schema validation engine (P85) — sen-sg-03-VALD</div>\n<div style=\"margin:0.2rem 0;color:#bbb\">&#9744; Unified quality signals dashboard (P85) — exch-qm-07-DASH</div>\n<div style=\"margin:0.2rem 0;color:#bbb\">&#9744; Artifact quality profile dashboard (P84) — agr-ad-05-PROF</div>\n<div style=\"margin:0.2rem 0;color:#bbb\">&#9744; Auto-migration generation (P83) — sen-sg-04-MIGR</div>\n<div style=\"margin:0.2rem 0;color:#bbb\">&#9744; Domain scope enforcement (P82) — sen-sg-05-SCOP</div></p><p style=\"color:#bbb;line-height:1.6;margin:0.4rem 0\"><h3 style=\"color:#4fc3f7;margin:1.4rem 0 0.5rem;font-size:1.1rem;font-weight:700;border-bottom:2px solid rgba(79,195,247,0.3);padding-bottom:0.2rem\">Success Criteria</h3></p><p style=\"color:#bbb;line-height:1.6;margin:0.4rem 0\"><div style=\"margin:0.2rem 0;color:#bbb\">&#9744; Quality gates operational for all artifact types (not just hypotheses)</div>\n<div style=\"margin:0.2rem 0;color:#bbb\">&#9744; Schema governance processing proposals through the full pipeline</div>\n<div style=\"margin:0.2rem 0;color:#bbb\">&#9744; Unified quality dashboard providing actionable oversight</div>\n<div style=\"margin:0.2rem 0;color:#bbb\">&#9744; Agent accountability visible through performance tracking</div>\n<div style=\"margin:0.2rem 0;color:#bbb\">&#9744; All open tasks completed and verified</div></p><p style=\"color:#bbb;line-height:1.6;margin:0.4rem 0\"><h3 style=\"color:#4fc3f7;margin:1.4rem 0 0.5rem;font-size:1.1rem;font-weight:700;border-bottom:2px solid rgba(79,195,247,0.3);padding-bottom:0.2rem\">Work Log</h3></p><p style=\"color:#bbb;line-height:1.6;margin:0.4rem 0\">_No entries yet._<br></p></div>","spec_file":"quest_senate_spec.md","commits":[{"hash":"59405c7c5","message":"docs: AGENTS.md — document Path A/B/C task completion semantics [task:docs-agents-completion] (#40)","date":"2026-04-25"},{"hash":"e5b5848a0","message":"WIP on orchestra/task/8fcc8dc8-debate-artifact-version-pinning-referenc: 8a24c2fa2 [Senate] Delete broken restore_database.sh (#38)","date":"2026-04-25"},{"hash":"50e5ffcfe","message":"index on orchestra/task/8fcc8dc8-debate-artifact-version-pinning-referenc: 8a24c2fa2 [Senate] Delete broken restore_database.sh (#38)","date":"2026-04-25"},{"hash":"0d37f5fce","message":"untracked files on orchestra/task/8fcc8dc8-debate-artifact-version-pinning-referenc: 8a24c2fa2 [Senate] Delete broken restore_database.sh (#38)","date":"2026-04-25"},{"hash":"48f8d2fe3","message":"feat: surface all five SciDEX layers in nav [task:cba19c94-1724-4d5a-b89d-96c73c25f12a] (#39)","date":"2026-04-25"},{"hash":"1f0e35929","message":"Squash merge: orchestra/task/b1a8e549-cross-cutting-wire-existing-k-dense-skil (2 commits)","date":"2026-04-25"},{"hash":"ddb7db381","message":"[Agora] Wire existing K-Dense-backed tools into debate orchestration [task:b1a8e549-6f31-43c5-80f5-7c4717c267e4]","date":"2026-04-25"},{"hash":"76b71427a","message":"[Agora] Wire existing K-Dense-backed tools into debate orchestration [task:b1a8e549-6f31-43c5-80f5-7c4717c267e4]","date":"2026-04-25"},{"hash":"779e85c3a","message":"[Senate] Verify /resources dashboard complete; check off acceptance criteria [task:82074adc-507f-4e6b-9092-e2ceee79e7d4]","date":"2026-04-25"},{"hash":"4c66a8e09","message":"[Senate] Establish emergency access recovery procedures [task:e643cdd3-afd6-410f-a366-a6297d112127]","date":"2026-04-25"},{"hash":"7265a06b4","message":"Squash merge: orchestra/task/b1a8e549-cross-cutting-wire-existing-k-dense-skil (1 commits)","date":"2026-04-25"},{"hash":"58406ec64","message":"[Atlas] Dashboard artifact type: living web views with data source rendering [task:a17-28-DASH0001]","date":"2026-04-25"},{"hash":"8a24c2fa2","message":"[Senate] Delete broken restore_database.sh (#38)","date":"2026-04-25"},{"hash":"b98a1fa18","message":"[Senate] Delete broken restore_database.sh","date":"2026-04-25"},{"hash":"e846f82ef","message":"[Senate] Refresh BACKUP_RESTORE.md + docs/runbooks/emergency_restore.md (#37)","date":"2026-04-25"},{"hash":"43972a45e","message":"[Senate] Refresh BACKUP_RESTORE.md + docs/runbooks/emergency_restore.md","date":"2026-04-25"},{"hash":"2c7dbfe7f","message":"[Senate] Delete 9 obsolete backup scripts/units (continuation of Phase A-D cleanup) (#36)","date":"2026-04-25"},{"hash":"9743eb298","message":"[Senate] Delete 9 obsolete backup scripts/units (continuation of Phase A-D cleanup)","date":"2026-04-25"},{"hash":"3e72d8383","message":"[Agora] Wire 3 missing tools into debate skill_functions, fix citation persistence bug [task:b1a8e549-6f31-43c5-80f5-7c4717c267e4]","date":"2026-04-25"},{"hash":"4310e9854","message":"[Demo] Work log: figures verified complete — 140/140 analyses covered [task:df201d8f-4b89-4258-9148-eb1028fc1fbd]","date":"2026-04-24"}]}