% Bibliography for hypothesis h-fd1562a3
% Title: Near-infrared light therapy stimulates COX4-dependent mitochondrial motility enhancement
% Generated: 2026-04-28T15:50:25Z

@article{pmid41197818,
  title = {ROS-responsive nanogels for brain targeted delivery of icariin in the treatment of Parkinson's disease.},
  author = {["Li X", "Huang J", "Zhou Y", "Chen X", "Dong Q", "Cui Y", "Chen Y"]},
  journal = {International journal of pharmaceutics},
  year = {2026},
  pmid = {41197818},
  doi = {10.1016/j.ijpharm.2025.126361},
}

@article{pmid41203052,
  title = {Complex IV deficiency due to COX4I1 deep intronic and de novo variants results in progressive motor impairment and Leigh syndrome.},
  author = {Ugarteburu O, Farré-Tarrats L, Muñoz-Pujol G, Unceta M, Las Heras J, Garcia-Ribes A, Arza-Ruesga A, de la Morena B, Arauz-Garofalo G, Gay M, Garrabou G, Corral J, Vilaseca M, Ribes A, García-Villoria J, Gort L, Tort F},
  journal = {Mitochondrion},
  year = {2026},
  pmid = {41203052},
  doi = {10.1016/j.mito.2025.102095},
  url = {https://pubmed.ncbi.nlm.nih.gov/41203052/},
}

@article{pmid41265820,
  title = {Developmental toxicity of carboxylated microplastics in zebrafish mediated by mitochondrial dysfunction and inflammatory activation.},
  author = {["Li Y", "Ni Y", "Dong C", "Zhang J", "Guo H", "Zhu S", "Du C", "Yu Q", "Wei Z", "Han Y"]},
  journal = {Environmental pollution (Barking, Essex : 1987)},
  year = {2026},
  pmid = {41265820},
  doi = {10.1016/j.envpol.2025.127390},
}

@article{pmid41596180,
  title = {Functional and Molecular Characterization of Melamine-Induced Disruption of Human Spermatozoa via Oxidative Stress and Apoptotic Pathways: An In Vitro Study.},
  author = {["Luongo F", "Annunzi E", "Ponchia R", "Girolamo F", "Morgante G", "Piomboni P", "Luddi A"]},
  journal = {Antioxidants (Basel, Switzerland)},
  year = {2026},
  pmid = {41596180},
  doi = {10.3390/antiox15010122},
}

@article{pmid41600627,
  title = {Integrated Profiling of DEHP-Induced Hippocampal Neurotoxicity in Adult Female Rats Based on Transcriptomic and Neurobiological Analyses.},
  author = {Bai J, Li J, Tang L, Sun W, Gao F, Zhang X, Bian R, Wang R},
  journal = {Toxics},
  year = {2026},
  pmid = {41600627},
  doi = {10.3390/toxics14010079},
  url = {https://pubmed.ncbi.nlm.nih.gov/41600627/},
}

@article{pmid41610872,
  title = {Single-Cell RNA Sequencing and Network Pharmacology Reveal the Potential Role of Oxidative Phosphorylation Inactivation in Diagnosing and Treating Chronic Tendon Injuries.},
  author = {["Niu J", "Wang L", "Qi J", "Lu G"]},
  journal = {The journal of gene medicine},
  year = {2026},
  pmid = {41610872},
  doi = {10.1002/jgm.70085},
}

@article{pmid41612594,
  title = {PRKAB2 as a tumor suppressor in renal cell carcinoma: inhibiting mitophagy via the LRPPRC-PRKN/parkin interaction and cardiolipin biosynthesis.},
  author = {Chen K, Zhang Y, Ruan H, Wei Z, Wang K, Cao Q, Wang Q, Dong Z, Wu Y, Yang H, Liu L, Liu Y, Zhang X},
  journal = {Autophagy},
  year = {2026},
  pmid = {41612594},
  doi = {10.1080/15548627.2026.2623985},
  url = {https://pubmed.ncbi.nlm.nih.gov/41612594/},
}

@article{pmid41815173,
  title = {Exploring the lactate-metabolism related characteristics during the development of medulloblastoma through single-cell and bulk RNA-seq.},
  author = {Wang C, Zhang R, Li S, Kang Z, Xia S, Li W},
  journal = {Translational cancer research},
  year = {2026},
  pmid = {41815173},
  doi = {10.21037/tcr-2025-1008},
  url = {https://pubmed.ncbi.nlm.nih.gov/41815173/},
}

@article{pmid39851493,
  title = {810-nm Photobiomodulation Evokes Glutamate Release in Normal and Rotenone-Dysfunctional Cortical Nerve Terminals by Modulating Mitochondrial Energy Metabolism.},
  author = {["Ravera S", "Farsetti E", "Maura G", "Marcoli M", "Bozzo M", "Cervetto C", "Amaroli A"]},
  journal = {Cells},
  year = {2025},
  pmid = {39851493},
  doi = {10.3390/cells14020067},
}

@article{pmid40430568,
  title = {Near-Infrared Photoimmunotherapy in Brain Tumors-An Unexplored Frontier.},
  author = {["Yamaguchi H", "Okada M", "Otani T", "On J", "Shibuma S", "Takino T", "Watanabe J", "Tsukamoto Y", "Ogura R", "Oishi M"]},
  journal = {Pharmaceuticals (Basel, Switzerland)},
  year = {2025},
  pmid = {40430568},
  doi = {10.3390/ph18050751},
}

@article{pmid40531278,
  title = {Evaluation of local and systemic photobiomodulation in only single-implant insertion: a randomized clinical trial.},
  author = {["Pucca D", "Pinheiro S"]},
  journal = {Oral and maxillofacial surgery},
  year = {2025},
  pmid = {40531278},
  doi = {10.1007/s10006-025-01424-5},
}

@article{pmid40533746,
  title = {Exosomes as nanocarriers for brain-targeted delivery of therapeutic nucleic acids: advances and challenges.},
  author = {["Sanadgol N", "Abedi M", "Hashemzaei M", "Kamran Z", "Khalseh R", "Beyer C", "Voelz C"]},
  journal = {Journal of nanobiotechnology},
  year = {2025},
  pmid = {40533746},
  doi = {10.1186/s12951-025-03528-2},
}

@article{pmid40821981,
  title = {Comparison of the efficacy of 12 interventions in the treatment of diabetic foot ulcers: a network meta-analysis.},
  author = {["Hu X", "Meng H", "Liang J", "An H", "Zhou J", "Gao Y", "You C", "Zhang Z", "Gong X", "Liu Y"]},
  journal = {PeerJ},
  year = {2025},
  pmid = {40821981},
  doi = {10.7717/peerj.19809},
}

@article{pmid41199078,
  title = {Bionanoconjugates in Neurodegeneration: Peptide-Nanoparticle Alliances for Next-Generation Therapies.},
  author = {["Ranjitha V", "Kumar A", "Kaalappa P"]},
  journal = {Pharmaceutical research},
  year = {2025},
  pmid = {41199078},
  doi = {10.1007/s11095-025-03941-0},
}

@article{pmid41586357,
  title = {Mongolian medicine Wulanwendusu-11 alleviates myocardial ischemia-reperfusion injury by modulating the intestinal microbiota and associated metabolic pathways.},
  author = {["Wuyunsiqin", "Bai T", "Yang D", "Hashentuya", "Namila", "Jin C", "Tana", "Zhao P", "Wang M", "Menggenduxi"]},
  journal = {Frontiers in microbiology},
  year = {2025},
  pmid = {41586357},
  doi = {10.3389/fmicb.2025.1693472},
}

@article{pmid38812393,
  title = {Photobiomodulation Therapy: A Novel Therapeutic Approach to Alzheimer's Disease Made Possible by the Evidence of a Brain-Gut Interconnection.},
  author = {["Blivet G", "Roman F", "Lelouvier B", "Ribi\u00e8re C", "Touchon J"]},
  journal = {Journal of integrative neuroscience},
  year = {2024},
  pmid = {38812393},
  doi = {10.31083/j.jin2305092},
}

@article{pmid38891098,
  title = {Photobiomodulation Therapy on Brain: Pioneering an Innovative Approach to Revolutionize Cognitive Dynamics.},
  author = {["Nairuz T", "Sangwoo-Cho", "Lee J"]},
  journal = {Cells},
  year = {2024},
  pmid = {38891098},
  doi = {10.3390/cells13110966},
}

@article{pmid39370461,
  title = {Dose-dependent effects of transcranial photobiomodulation on brain temperature in patients with major depressive disorder: a spectroscopy study.},
  author = {["Weerasekera A", "Coelho D", "Ratai E", "Collins K", "Puerto A", "De Taboada L", "Gersten M", "Clancy J", "Hoptman M", "Irvin M"]},
  journal = {Lasers in medical science},
  year = {2024},
  pmid = {39370461},
  doi = {10.1007/s10103-024-04198-6},
}

@article{pmid39695746,
  title = {Mystery of gamma wave stimulation in brain disorders.},
  author = {["Deng Q", "Wu C", "Parker E", "Zhu J", "Liu T", "Duan R", "Yang L"]},
  journal = {Molecular neurodegeneration},
  year = {2024},
  pmid = {39695746},
  doi = {10.1186/s13024-024-00785-x},
}

@article{pmid35471096,
  title = {Increased mitophagy protects cochlear hair cells from aminoglycoside-induced damage.},
  author = {Zhang Y, Fang Q, Wang H, Qi J, Sun S, Liao M, Wu Y, Hu Y, Jiang P, Cheng C},
  journal = {Autophagy},
  year = {2023},
  pmid = {35471096},
  doi = {10.1080/15548627.2022.2062872},
  url = {https://pubmed.ncbi.nlm.nih.gov/35471096},
}

@article{pmid37434394,
  title = {Low level of ARID1A contributes to adaptive immune resistance and sensitizes triple-negative breast cancer to immune checkpoint inhibitors.},
  author = {["Chen X", "Li B", "Wang Y", "Jin J", "Yang Y", "Huang L", "Yang M", "Zhang J", "Wang B", "Shao Z"]},
  journal = {Cancer communications (London, England)},
  year = {2023},
  pmid = {37434394},
  doi = {10.1002/cac2.12465},
}

@article{pmid37981056,
  title = {Evaluating the toxic mechanism of 1,2-diacetylbenzene in neural cells/tissues: The favorable impact of silibinin.},
  author = {["Fay L", "Chien J", "Weng C", "Kuo H", "Liou D", "Weng W", "Lin C", "Chen Y", "Huang W", "Huang W"]},
  journal = {Neurotoxicology},
  year = {2023},
  pmid = {37981056},
  doi = {10.1016/j.neuro.2023.11.005},
}

@article{pmid32722981,
  title = {BNIP3L/NIX degradation leads to mitophagy deficiency in ischemic brains.},
  author = {Wu X, Zheng Y, Liu M, Li Y, Ma S, Tang W, Yan W, Cao M, Zheng W, Jiang L},
  journal = {Autophagy},
  year = {2021},
  pmid = {32722981},
  doi = {10.1080/15548627.2020.1802089},
  url = {https://pubmed.ncbi.nlm.nih.gov/32722981},
}

@article{pmid34119804,
  title = {Transcranial photobiomodulation in the management of brain disorders.},
  author = {["Montazeri K", "Farhadi M", "Fekrazad R", "Akbarnejad Z", "Chaibakhsh S", "Mahmoudian S"]},
  journal = {Journal of photochemistry and photobiology. B, Biology},
  year = {2021},
  pmid = {34119804},
  doi = {10.1016/j.jphotobiol.2021.112207},
}

@article{pmid32308618,
  title = {Mitochondrial Dysfunction and Parkinson's Disease-Near-Infrared Photobiomodulation as a Potential Therapeutic Strategy.},
  author = {["Foo A", "Soong T", "Yeo T", "Lim K"]},
  journal = {Frontiers in aging neuroscience},
  year = {2020},
  pmid = {32308618},
  doi = {10.3389/fnagi.2020.00089},
}

@article{pmid32850106,
  title = {Teriflunomide preserves peripheral nerve mitochondria from oxidative stress-mediated alterations.},
  author = {["Malla B", "Cotten S", "Ulshoefer R", "Paul F", "Hauser A", "Niesner R", "Bros H", "Infante-Duarte C"]},
  journal = {Therapeutic advances in chronic disease},
  year = {2020},
  pmid = {32850106},
  doi = {10.1177/2040622320944773},
}

@article{pmid31647776,
  title = {Treatment of Neurodegeneration: Integrating Photobiomodulation and Neurofeedback in Alzheimer's Dementia and Parkinson's: A Review.},
  author = {["Berman M", "Nichols T"]},
  journal = {Photobiomodulation, photomedicine, and laser surgery},
  year = {2019},
  pmid = {31647776},
  doi = {10.1089/photob.2019.4685},
}

@article{pmid29327206,
  title = {Brain Photobiomodulation Therapy: a Narrative Review.},
  author = {["Salehpour F", "Mahmoudi J", "Kamari F", "Sadigh-Eteghad S", "Rasta S", "Hamblin M"]},
  journal = {Molecular neurobiology},
  year = {2018},
  pmid = {29327206},
  doi = {10.1007/s12035-017-0852-4},
}

@article{pmid27871905,
  title = {The behavioural and neuroprotective outcomes when 670nm and 810nm near infrared light are applied together in MPTP-treated mice.},
  author = {["Reinhart F", "Massri N", "Torres N", "Chabrol C", "Molet J", "Johnstone D", "Stone J", "Benabid A", "Mitrofanis J", "Moro C"]},
  journal = {Neuroscience research},
  year = {2017},
  pmid = {27871905},
  doi = {10.1016/j.neures.2016.11.006},
}

@article{pmid28210202,
  title = {Mechanisms and Effects of Transcranial Direct Current Stimulation.},
  author = {["Giordano J", "Bikson M", "Kappenman E", "Clark V", "Coslett H", "Hamblin M", "Hamilton R", "Jankord R", "Kozumbo W", "McKinley R"]},
  journal = {Dose-response : a publication of International Hormesis Society},
  year = {2017},
  pmid = {28210202},
  doi = {10.1177/1559325816685467},
}

@article{pmid28499983,
  title = {Photostimulation of mitochondria as a treatment for retinal neurodegeneration.},
  author = {["Beirne K", "Rozanowska M", "Votruba M"]},
  journal = {Mitochondrion},
  year = {2017},
  pmid = {28499983},
  doi = {10.1016/j.mito.2017.05.002},
}

@article{pmid26598558,
  title = {Reducing Lissencephaly-1 levels augments mitochondrial transport and has a protective effect in adult Drosophila neurons.},
  author = {["Vagnoni A", "Hoffmann P", "Bullock S"]},
  journal = {Journal of cell science},
  year = {2016},
  pmid = {26598558},
  doi = {10.1242/jcs.179184},
}

@article{pmid27752476,
  title = {Shining light on the head: Photobiomodulation for brain disorders.},
  author = {["Hamblin M"]},
  journal = {BBA clinical},
  year = {2016},
  pmid = {27752476},
  doi = {10.1016/j.bbacli.2016.09.002},
}

@article{pmid28179878,
  title = {Geniposide Alleviates Amyloid-Induced Synaptic Injury by Protecting Axonal Mitochondrial Trafficking.},
  author = {["Zhang H", "Zhao C", "Lv C", "Liu X", "Du S", "Li Z", "Wang Y", "Zhang W"]},
  journal = {Frontiers in cellular neuroscience},
  year = {2016},
  pmid = {28179878},
  doi = {10.3389/fncel.2016.00309},
}

@article{pmid25462595,
  title = {810nm near-infrared light offers neuroprotection and improves locomotor activity in MPTP-treated mice.},
  author = {["Reinhart F", "Massri N", "Darlot F", "Torres N", "Johnstone D", "Chabrol C", "Costecalde T", "Stone J", "Mitrofanis J", "Benabid A"]},
  journal = {Neuroscience research},
  year = {2015},
  pmid = {25462595},
  doi = {10.1016/j.neures.2014.11.005},
}

@article{pmid25700560,
  title = {SIRT5 regulation of ammonia-induced autophagy and mitophagy.},
  author = {Polletta L, Vernucci E, Carnevale I, Arcangeli T, Rotili D, Palmerio S, Steegborn C, Nowak T, Schutkowski M, Pellegrini L},
  journal = {Autophagy},
  year = {2015},
  pmid = {25700560},
  doi = {10.1080/15548627.2015.1009778},
  url = {https://pubmed.ncbi.nlm.nih.gov/25700560},
}

@article{pmid25330838,
  title = {Transcranial bright light treatment via the ear canals in seasonal affective disorder: a randomized, double-blind dose-response study.},
  author = {["Jurvelin H", "Takala T", "Nissil\u00e4 J", "Timonen M", "R\u00fcger M", "Jokelainen J", "R\u00e4s\u00e4nen P"]},
  journal = {BMC psychiatry},
  year = {2014},
  pmid = {25330838},
  doi = {10.1186/s12888-014-0288-6},
}