% Bibliography for hypothesis h-e23f05fb
% Title: Multi-Modal CRISPR Platform for Simultaneous Editing and Monitoring
% Generated: 2026-04-28T19:25:26Z

@article{pmid41588889,
  title = {Targeting Non-coding RNAs in Neurodegeneration: Advances in Therapeutic RNA Modalities and Next-Gen Delivery Technologies.},
  author = {["Thakur A", "Chowdhury K", "Kumar A", "Sharma V", "Bhatia R"]},
  journal = {Current Alzheimer research},
  year = {2026},
  pmid = {41588889},
  doi = {10.2174/0115672050421604251108045622},
}

@article{pmid41595476,
  title = {Hereditary Polyneuropathies in the Era of Precision Medicine: Genetic Complexity and Emerging Strategies.},
  author = {["Chrysostomaki M", "Chatzi D", "Kyriakoudi S", "Meditskou S", "Manthou M", "Gargani S", "Theotokis P", "Dermitzakis I"]},
  journal = {Genes},
  year = {2026},
  pmid = {41595476},
  doi = {10.3390/genes17010056},
}

@article{pmid41905621,
  title = {Genome editing in Parkinson's disease: Unlocking therapeutic avenues through CRISPR-Cas systems.},
  author = {["Singh R", "Maity P", "Jaiswal C"]},
  journal = {Neurochemistry international},
  year = {2026},
  pmid = {41905621},
  doi = {10.1016/j.neuint.2026.106149},
}

@article{pmid41918200,
  title = {Neuroinflammation, Autophagy, and Neurodegeneration: Mechanisms and Therapeutic Insights.},
  author = {["Khanal P", "Balmik A"]},
  journal = {CNS & neurological disorders drug targets},
  year = {2026},
  pmid = {41918200},
  doi = {10.2174/0118715273440234260304000039},
}

@article{pmid41674784,
  title = {CRISPR-Cas technologies in neurodegenerative disorders: mechanistic insights, therapeutic potential, and translational challenges.},
  author = {["Yashooa R", "Nabi A", "Smail S", "Azeez S", "Nooh W", "Mustafa S", "Al-Farha A", "Capitanio N", "Shekha M"]},
  journal = {Frontiers in neurology},
  year = {2025},
  pmid = {41674784},
  doi = {10.3389/fneur.2025.1737468},
}

@article{pmid35173339,
  title = {Magnetic control of tokamak plasmas through deep reinforcement learning.},
  author = {Degrave J, Felici F, Buchli J, Neunert M, Tracey B, Carpanese F, Ewalds T, Hafner R, Abdolmaleki A, de Las Casas D, Donner C, Fritz L, Galperti C, Huber A, Keeling J, Tsimpoukelli M, Kay J, Merle A, Moret JM, Noury S, Pesamosca F, Pfau D, Sauter O, Sommariva C, Coda S, Duval B, Fasoli A, Kohli P, Kavukcuoglu K, Hassabis D},
  journal = {Nature},
  year = {2022},
  pmid = {35173339},
  doi = {10.1038/s41586-021-04301-9},
  url = {https://pubmed.ncbi.nlm.nih.gov/35173339/},
}

@article{pmid33199879,
  title = {Cardiomyocyte-derived calcitonin regulates atrial fibrosis and AF.},
  author = {Fernández-Ruiz I},
  journal = {Nature reviews. Cardiology},
  year = {2021},
  pmid = {33199879},
  doi = {10.1038/s41569-020-00479-z},
  url = {https://pubmed.ncbi.nlm.nih.gov/33199879/},
}

@article{pmid33462442,
  title = {Precision genome editing using cytosine and adenine base editors in mammalian cells.},
  author = {Huang TP, Newby GA, Liu DR},
  journal = {Nature protocols},
  year = {2021},
  pmid = {33462442},
  doi = {10.1038/s41596-020-00450-9},
  url = {https://pubmed.ncbi.nlm.nih.gov/33462442/},
}

@article{pmid33892188,
  title = {Co-opting regulation bypass repair as a gene-correction strategy for monogenic diseases.},
  author = {Hu J, Bourne RA, McGrath BC, Lin A, Pei Z, Cavener DR},
  journal = {Molecular therapy : the journal of the American Society of Gene Therapy},
  year = {2021},
  pmid = {33892188},
  doi = {10.1016/j.ymthe.2021.04.017},
  url = {https://pubmed.ncbi.nlm.nih.gov/33892188/},
}

@article{pmid34469734,
  title = {SMS2 deficiency impairs PKCδ-regulated B cell tolerance in the germinal center.},
  author = {Ou P, Stanek A, Huan Z, Roman CAJ, Huan C},
  journal = {Cell reports},
  year = {2021},
  pmid = {34469734},
  doi = {10.1016/j.celrep.2021.109624},
  url = {https://pubmed.ncbi.nlm.nih.gov/34469734/},
}

@article{pmid30778238,
  title = {Long-term evaluation of AAV-CRISPR genome editing for Duchenne muscular dystrophy.},
  author = {Nelson CE, Wu Y, Gemberling MP, Oliver ML, Waller MA, Bohning JD, Robinson-Hamm JN, Bulaklak K, Castellanos Rivera RM, Collier JH, Asokan A, Gersbach CA},
  journal = {Nature medicine},
  year = {2019},
  pmid = {30778238},
  doi = {10.1038/s41591-019-0344-3},
  url = {https://pubmed.ncbi.nlm.nih.gov/30778238/},
}

@article{pmid31733438,
  title = {Application of CRISPR/Cas9 editing and digital droplet PCR in human iPSCs to generate novel knock-in reporter lines to visualize dopaminergic neurons.},
  author = {Überbacher C, Obergasteiger J, Volta M, Venezia S, Müller S, Pesce I, Pizzi S, Lamonaca G, Picard A, Cattelan G, Malpeli G, Zoli M, Beccano-Kelly D, Flynn R, Wade-Martins R, Pramstaller PP, Hicks AA, Cowley SA, Corti C},
  journal = {Stem cell research},
  year = {2019},
  pmid = {31733438},
  doi = {10.1016/j.scr.2019.101656},
  url = {https://pubmed.ncbi.nlm.nih.gov/31733438/},
}

@article{pmid30540754,
  title = {Multiplexed CRISPR/Cas9-mediated knockout of 19 Fanconi anemia pathway genes in zebrafish revealed their roles in growth, sexual development and fertility.},
  author = {Ramanagoudr-Bhojappa R, Carrington B, Ramaswami M, Bishop K, Robbins GM, Jones M, Harper U, Frederickson SC, Kimble DC, Sood R, Chandrasekharappa SC},
  journal = {PLoS genetics},
  year = {2018},
  pmid = {30540754},
  doi = {10.1371/journal.pgen.1007821},
  url = {https://pubmed.ncbi.nlm.nih.gov/30540754/},
}

@article{pmid29083409,
  title = {Computational correction of copy number effect improves specificity of CRISPR-Cas9 essentiality screens in cancer cells.},
  author = {Meyers RM, Bryan JG, McFarland JM, Weir BA, Sizemore AE, Xu H, Dharia NV, Montgomery PG, Cowley GS, Pantel S, Goodale A, Lee Y, Ali LD, Jiang G, Lubonja R, Harrington WF, Strickland M, Wu T, Hawes DC, Zhivich VA, Wyatt MR, Kalani Z, Chang JJ, Okamoto M, Stegmaier K, Golub TR, Boehm JS, Vazquez F, Root DE, Hahn WC},
  journal = {Nature genetics},
  year = {2017},
  pmid = {29083409},
  doi = {10.1038/ng.3984},
  url = {https://pubmed.ncbi.nlm.nih.gov/29083409/},
}

@article{pmid11814055,
  title = {Transformation: a tool for studying fungal pathogens of plants.},
  author = {Mullins ED, Kang S},
  journal = {Cellular and molecular life sciences : CMLS},
  year = {2001},
  pmid = {11814055},
  doi = {10.1007/PL00000835},
  url = {https://pubmed.ncbi.nlm.nih.gov/11814055/},
}