% Bibliography for hypothesis h-d2722680
% Title: Epigenetic Memory Erasure via TET2 Activation
% Generated: 2026-04-28T14:07:10Z

@article{pmid40929507,
  title = {Clonal Hematopoiesis in Nonmalignant Disease: Functional Consequences of Mutated Immune Cells by Clonal Hematopoiesis in the Diseased Tissue.},
  author = {Koh Y, Tengesdal IW, Jaiswal S},
  journal = {Annu Rev Pathol},
  year = {2026},
  pmid = {40929507},
  doi = {10.1146/annurev-pathmechdis-111523-023442},
  url = {https://pubmed.ncbi.nlm.nih.gov/40929507},
}

@article{pmid41655693,
  title = {TET2 in epigenetic control of immune cells: Implications for inflammatory responses and age-related pathologies.},
  author = {Obrebski T, Maleszewska M, Dunin-Horkawicz S, Malik AR},
  journal = {The Journal of biological chemistry},
  year = {2026},
  pmid = {41655693},
  doi = {10.1016/j.jbc.2026.111267},
  url = {https://pubmed.ncbi.nlm.nih.gov/41655693/},
}

@article{pmid41796631,
  title = {Food-grade TiO2/TDCPP Co-exposure disrupts ACOD1/itaconate axis and is associated with TET2-NF-κB inflammation in microglia exacerbating neurotoxicity.},
  author = {Guo Q, Wang D, Zhao C, Wei S, Hu C, Liu Z, Li Y, Li R, Wang J},
  journal = {Food and chemical toxicology : an international journal published for the British Industrial Biological Research Association},
  year = {2026},
  pmid = {41796631},
  doi = {10.1016/j.fct.2026.116055},
  url = {https://pubmed.ncbi.nlm.nih.gov/41796631/},
}

@article{pmid41811389,
  title = {Tet methylcytosine dioxygenase 2(TET2)-dependent epigenetic regulation in the pathogenesis of polycystic ovary syndrome.},
  author = {Liu K, Hong Y, Gao Q, Huang J, Liu L, Li Y, Liang Y, Zhang S, He X, Nie X},
  journal = {Cellular and molecular life sciences : CMLS},
  year = {2026},
  pmid = {41811389},
  doi = {10.1007/s00018-026-06134-z},
  url = {https://pubmed.ncbi.nlm.nih.gov/41811389/},
}

@article{pmid41815912,
  title = {Huangkui capsule mitigates diabetic nephropathy via epigenetic therapy effects.},
  author = {["Yu Y", "Tang H", "Li N", "Ge H", "Wu J", "Gu H"]},
  journal = {Frontiers in pharmacology},
  year = {2026},
  pmid = {41815912},
  doi = {10.3389/fphar.2026.1775173},
}

@article{pmid41845342,
  title = {DNA hypermethylation of choline kinases drives blockage of choline-phosphatidylcholine biosynthesis: lipidomic biomarkers and epigenetic insights of hepatic steatosis induced by arsenic.},
  author = {["Fu Q", "Wang Q", "Song D", "Zhou X", "Chen H", "Wei S", "Ma L"]},
  journal = {BMC medicine},
  year = {2026},
  pmid = {41845342},
  doi = {10.1186/s12916-026-04793-0},
}

@article{pmid41859529,
  title = {Contribution of rare variation to degenerative orthopedic diseases.},
  author = {["Anker-Hansen C", "Manderstedt E", "Lind-Halld\u00e9n C", "Halld\u00e9n C", "Z\u00f6ller B"]},
  journal = {Osteoarthritis and cartilage open},
  year = {2026},
  pmid = {41859529},
  doi = {10.1016/j.ocarto.2026.100767},
}

@article{pmid41873173,
  title = {Molecular Genetic Demonstration of the Evolution of Transformed Mycosis Fungoides: A Clinicopathological and Molecular Case Study.},
  author = {["Cheng M", "Crisan L", "Zain J", "Afkhami M", "Querfeld C"]},
  journal = {Journal of cutaneous pathology},
  year = {2026},
  pmid = {41873173},
  doi = {10.1111/cup.70095},
}

@article{pmid41882294,
  title = {Expanding the genetic burden of low-evidence genes in pulmonary arterial hypertension.},
  author = {["Miranda-Alcaraz L", "Mora-G\u00f3mez M", "Gallego-Zazo N", "Cruz-Utrilla A", "Del Cerro Mar\u00edn M", "Ochoa Parra N", "Mart\u00edn de Miguel I", "Guti\u00e9rrez Ortiz E", "Jim\u00e9nez-Estrada J", "Parra A"]},
  journal = {European journal of human genetics : EJHG},
  year = {2026},
  pmid = {41882294},
  doi = {10.1038/s41431-026-02081-2},
}

@article{pmid41896302,
  title = {TET1 deficiency amplifies macrophage inflammatory signaling associated with Crohn's disease.},
  author = {["Perez R", "Paul R", "Kumar P", "Tutkun A", "Webb D", "McGorty S", "Wieckowski T", "Yap Y", "Leesang T", "Vlantis P"]},
  journal = {Inflammation research : official journal of the European Histamine Research Society ... [et al.]},
  year = {2026},
  pmid = {41896302},
  doi = {10.1007/s00011-026-02228-3},
}

@article{pmid41898318,
  title = {BRAF Mutations in Myeloid Neoplasms: Prevalence, Co-Mutation Landscape, and Clinical Outcomes-A Comprehensive Review.},
  author = {["Mohamed S", "Mohamed A", "Mudarres M", "Abdalla A", "Al-Mashdali A", "Abdulgayoom M", "Mesilhy R", "Abuasab T", "Cherif H", "Borthakur G"]},
  journal = {Biomedicines},
  year = {2026},
  pmid = {41898318},
  doi = {10.3390/biomedicines14030672},
}

@article{pmid41899316,
  title = {Clonal Hematopoiesis in Cardiovascular Risk: Focus on Inflammatory Mechanisms.},
  author = {["Sinnadurai S", "Honigberg M", "Meijers W", "Merkus D", "Niroula A", "Sharma H", "Jankowski P", "Van Der Spek P", "de Boer R", "Manintveld O"]},
  journal = {Journal of clinical medicine},
  year = {2026},
  pmid = {41899316},
  doi = {10.3390/jcm15062393},
}

@article{pmid41906498,
  title = {Exosome-transmitted microRNA-323a-3p participated in the occurrence of Hirschsprung's disease.},
  author = {Shen H, Wang C, Lv X, Gao Z, Qiu Y, Zhi Z, Tang J, Du C, Zhang R, Li H, Tang W},
  journal = {Epigenomics},
  year = {2026},
  pmid = {41906498},
  doi = {10.1080/17501911.2026.2647714},
  url = {https://pubmed.ncbi.nlm.nih.gov/41906498/},
}

@article{pmid41914034,
  title = {Chimeric antigen receptor T-cell therapies related to immune effector cell-associated hemophagocytic lymphohistiocytosis-like syndrome: Diagnosis, high-risk factors, and management.},
  author = {Zhang Y, Yang J, Xin H, Ai K, Yang M, Li Y, He Y},
  journal = {Chinese medical journal},
  year = {2026},
  pmid = {41914034},
  doi = {10.1097/CM9.0000000000004066},
  url = {https://pubmed.ncbi.nlm.nih.gov/41914034/},
}

@article{pmid41922159,
  title = {Somatic Mutations and Mutation Burden Predict Treatment Response and Survival in Adult Acquired Pure Red Cell Aplasia.},
  author = {Yang L, Zhang H, Wei Y, Niu H, Liu Y, Zhang T, Xing L, Shao Z, Fu R, Wang H},
  journal = {American journal of hematology},
  year = {2026},
  pmid = {41922159},
  doi = {10.1002/ajh.70311},
  url = {https://pubmed.ncbi.nlm.nih.gov/41922159/},
}

@article{pmid41924921,
  title = {Azacitidine-induced remission enables allogeneic transplantation in TET2/BCOR-mutant relapsed extranodal natural killer/T-cell lymphoma: a case report.},
  author = {Ortiz CR, Abouzeid H, De Bernardi C, Durham A, Mathoux G, Masouridi S, Mckee TA, Sibon D, Hermine O, Weinstock DM, Egervari K, Tamburini J},
  journal = {Haematologica},
  year = {2026},
  pmid = {41924921},
  doi = {10.3324/haematol.2025.300314},
  url = {https://pubmed.ncbi.nlm.nih.gov/41924921/},
}

@article{pmid41926089,
  title = {Clonal Hematopoiesis and Risk of Trastuzumab-Related Cardiotoxic Effects.},
  author = {Park CS, Ryu G, Ahn HJ, Sun C, Lee SP, Kim HK, Kim YJ, Jeon SY, Lee HB, Moon HG, Han W, Lee DW, Lee KH, Han SW, Im SA, Lee SE, Jaiswal S, Koh Y, Park JB},
  journal = {JAMA oncology},
  year = {2026},
  pmid = {41926089},
  doi = {10.1001/jamaoncol.2026.0455},
  url = {https://pubmed.ncbi.nlm.nih.gov/41926089/},
}

@article{pmid40067382,
  title = {TET2 suppresses vascular calcification by forming an inhibitory complex with HDAC1/2 and SNIP1 independent of demethylation.},
  author = {He D, Ma J, Zhou Z, Qi Y, Lian Y, Wang F, Yin H, Zhang H, Zhang T, Huang H},
  journal = {The Journal of clinical investigation},
  year = {2025},
  pmid = {40067382},
  doi = {10.1172/JCI186673},
  url = {https://pubmed.ncbi.nlm.nih.gov/40067382/},
}

@article{pmid39358506,
  title = {RNA m5C oxidation by TET2 regulates chromatin state and leukaemogenesis.},
  author = {Zou Z, Dou X, Li Y, Zhang Z, Wang J, Gao B, Xiao Y, Wang Y, Zhao L, Sun C, Liu Q, Yu X, Wang H, Hong J, Dai Q, Yang FC, Xu M, He C},
  journal = {Nature},
  year = {2024},
  pmid = {39358506},
  doi = {10.1038/s41586-024-07969-x},
  url = {https://pubmed.ncbi.nlm.nih.gov/39358506/},
}

@article{pmid36755094,
  title = {TET2 guards against unchecked BATF3-induced CAR T cell expansion.},
  author = {Jain N, Zhao Z, Feucht J, Koche R, Iyer A, Dobrin A, Mansilla-Soto J, Yang J, Zhan Y, Lopez M},
  journal = {Nature},
  year = {2023},
  pmid = {36755094},
  doi = {10.1038/s41586-022-05692-z},
  url = {https://pubmed.ncbi.nlm.nih.gov/36755094},
}

@article{pmid36928826,
  title = {Clonal Hematopoiesis of Indeterminate Potential: Current Understanding and Future Directions.},
  author = {Singh I, Singh A},
  journal = {Curr Oncol Rep},
  year = {2023},
  pmid = {36928826},
  doi = {10.1007/s11912-023-01382-9},
  url = {https://pubmed.ncbi.nlm.nih.gov/36928826},
}

@article{pmid35173105,
  title = {Disturbed gastric motility in patients with long-standing diabetes mellitus.},
  author = {["Kamiya T", "Fukuta H", "Hagiwara H", "Shikano M", "Kato T", "Imaeda K"]},
  journal = {Journal of smooth muscle research = Nihon Heikatsukin Gakkai kikanshi},
  year = {2022},
  pmid = {35173105},
  doi = {10.1540/jsmr.58.1},
}

@article{pmid35318375,
  title = {Psychometric investigation of the gamification Hexad user types scale in Brazilian Portuguese.},
  author = {["Santos A", "Oliveira W", "Altmeyer M", "Hamari J", "Isotani S"]},
  journal = {Scientific reports},
  year = {2022},
  pmid = {35318375},
  doi = {10.1038/s41598-022-08820-x},
}

@article{pmid35931086,
  title = {DNA methyltransferase 3 alpha and TET methylcytosine dioxygenase 2 restrain mitochondrial DNA-mediated interferon signaling in macrophages.},
  author = {Cobo I, Tanaka TN, Chandra Mangalhara K, Lana A, Yeang C, Han C, Schlachetzki J, Challcombe J, Fixsen BR, Sakai M, Li RZ, Fields H, Mokry M, Tsai RG, Bejar R, Prange K, de Winther M, Shadel GS, Glass CK},
  journal = {Immunity},
  year = {2022},
  pmid = {35931086},
  doi = {10.1016/j.immuni.2022.06.022},
  url = {https://pubmed.ncbi.nlm.nih.gov/35931086/},
}

@article{pmid36242424,
  title = {Photonic microwave frequency divider with a tunable division ratio and harmonic suppression capability.},
  author = {["Chen H", "Chan E"]},
  journal = {Optics express},
  year = {2022},
  pmid = {36242424},
  doi = {10.1364/OE.462236},
}

@article{pmid33085059,
  title = {The function and regulation of TET2 in innate immunity and inflammation.},
  author = {Cong B, Zhang Q, Cao X},
  journal = {Protein Cell},
  year = {2021},
  pmid = {33085059},
  doi = {10.1007/s13238-020-00796-6},
  url = {https://pubmed.ncbi.nlm.nih.gov/33085059},
}

@article{pmid33445678,
  title = {Inhibitory Neural Network's Impairments at Hippocampal CA1 LTP in an Aged Transgenic Mouse Model of Alzheimer's Disease.},
  author = {["Seo HJ", "Park JE", "Choi SM", "Kim T", "Cho SH", "Lee KH", "Song WK", "Song J", "Jeong HS", "Kim DH", "Kim BC"]},
  journal = {International journal of molecular sciences},
  year = {2021},
  pmid = {33445678},
  doi = {10.3390/ijms22020698},
  url = {https://pubmed.ncbi.nlm.nih.gov/33445678/},
}

@article{pmid33637704,
  title = {Direct imaging and electronic structure modulation of moiré superlattices at the 2D/3D interface.},
  author = {["Reidy K", "Varnavides G", "Thomsen J", "Kumar A", "Pham T", "Blackburn A", "Anikeeva P", "Narang P", "LeBeau J", "Ross F"]},
  journal = {Nature communications},
  year = {2021},
  pmid = {33637704},
  doi = {10.1038/s41467-021-21363-5},
}

@article{pmid34341416,
  title = {Prognostic significance of the albumin-to-globulin ratio for advanced urothelial carcinoma treated with pembrolizumab: a multicenter retrospective study.},
  author = {["Taguchi S", "Kawai T", "Nakagawa T", "Nakamura Y", "Kamei J", "Obinata D", "Yamaguchi K", "Kaneko T", "Kakutani S", "Tokunaga M"]},
  journal = {Scientific reports},
  year = {2021},
  pmid = {34341416},
  doi = {10.1038/s41598-021-95061-z},
}

@article{pmid34567890,
  title = {Multiple Primary Malignancies in Head and Neck Cancer: A University Hospital Experience Over a Five-Year Period.},
  author = {["Batista MV", "Ulrich J", "Costa L", "Ribeiro LA"]},
  journal = {Cureus},
  year = {2021},
  pmid = {34567890},
  doi = {10.7759/cureus.17349},
  url = {https://pubmed.ncbi.nlm.nih.gov/34567890/},
}

@article{pmid31911489,
  title = {Computational and Experimental Investigation of Biofilm Disruption Dynamics Induced by High-Velocity Gas Jet Impingement.},
  author = {["Prades L", "Fabbri S", "Dorado A", "Gamisans X", "Stoodley P", "Picioreanu C"]},
  journal = {mBio},
  year = {2020},
  pmid = {31911489},
  doi = {10.1128/mBio.02813-19},
}

@article{pmid32877690,
  title = {Alpha-Ketoglutarate, an Endogenous Metabolite, Extends Lifespan and Compresses Morbidity in Aging Mice.},
  author = {["Asadi Shahmirzadi A", "Edgar D", "Liao C", "Hsu Y", "Lucanic M", "Asadi Shahmirzadi A", "Wiley C", "Gan G", "Kim D", "Kasler H"]},
  journal = {Cell metabolism},
  year = {2020},
  pmid = {32877690},
  doi = {10.1016/j.cmet.2020.08.004},
}

@article{pmid33298875,
  title = {Initial whole-genome sequencing and analysis of the host genetic contribution to COVID-19 severity and susceptibility.},
  author = {["Wang F", "Huang S", "Gao R", "Zhou Y", "Lai C", "Li Z", "Xian W", "Qian X", "Li Z", "Huang Y"]},
  journal = {Cell discovery},
  year = {2020},
  pmid = {33298875},
  doi = {10.1038/s41421-020-00231-4},
}

@article{pmid29784781,
  title = {C-4 sterol demethylation enzymes distinguish bacterial and eukaryotic sterol synthesis.},
  author = {["Lee A", "Banta A", "Wei J", "Kiemle D", "Feng J", "Giner J", "Welander P"]},
  journal = {Proceedings of the National Academy of Sciences of the United States of America},
  year = {2018},
  pmid = {29784781},
  doi = {10.1073/pnas.1802930115},
}

@article{pmid30127997,
  title = {CREB1, a direct target of miR-122, promotes cell proliferation and invasion in bladder cancer.},
  author = {["Guo L", "Yin M", "Wang Y"]},
  journal = {Oncology letters},
  year = {2018},
  pmid = {30127997},
  doi = {10.3892/ol.2018.9118},
}

@article{pmid23828890,
  title = {Global epigenomic reconfiguration during mammalian brain development.},
  author = {Lister R, Mukamel EA, Nery JR, Urich M, Puddifoot CA, Johnson ND, Lucero J, Huang Y, Dwork AJ, Schultz MD},
  journal = {Science},
  year = {2013},
  pmid = {23828890},
  doi = {10.1126/science.1237905},
  url = {https://pubmed.ncbi.nlm.nih.gov/23828890},
}