% Bibliography for hypothesis h-baba5269
% Title: Partial Neuronal Reprogramming via Modified Yamanaka Cocktail
% Generated: 2026-04-28T13:52:35Z

@article{pmid41551196,
  title = {Engineered LINC MIR503HG-loaded extracellular vesicles maintain stemness and pluripotency during long-term hiPSCs culture.},
  author = {Zhu J, Zhu X, Feng W, Jin Y, Ge X et al.},
  journal = {Bioact Mater},
  year = {2026},
  pmid = {41551196},
  doi = {doi: 10.1016/j.bioactmat.2025.12.023},
  url = {https://pubmed.ncbi.nlm.nih.gov/41551196/},
}

@article{pmid41691922,
  title = {Development of a practical GMP-compliant manufacturing process for T cell-derived induced pluripotent stem cells.},
  author = {Hulspas R, Sasso C, Cunningham A, Cancelas JA, Daheron LM et al.},
  journal = {Cytotherapy},
  year = {2026},
  pmid = {41691922},
  doi = {doi: 10.1016/j.jcyt.2025.102036},
  url = {https://pubmed.ncbi.nlm.nih.gov/41691922/},
}

@article{pmid41713384,
  title = {Establishment of a human induced pluripotent stem cell line (BTHBIOi005-A) from a retinitis pigmentosa patient with a MERTK gene mutation.},
  author = {Liu ZY, Zhang H, Zhang XH, Shen RJ, Jin ZB},
  journal = {Stem Cell Res},
  year = {2026},
  pmid = {41713384},
  doi = {doi: 10.1016/j.scr.2026.103941},
  url = {https://pubmed.ncbi.nlm.nih.gov/41713384/},
}

@article{pmid38381405,
  title = {Gene Therapy-Mediated Partial Reprogramming Extends Lifespan and Reverses Age-Related Changes in Aged Mice.},
  author = {Macip CC, Hasan R, Hoznek V, Kim J, Lu YR, Metzger LE, Sethna S, Davidsohn N},
  journal = {Cellular reprogramming},
  year = {2024},
  pmid = {38381405},
  doi = {10.1089/cell.2023.0072},
  url = {https://pubmed.ncbi.nlm.nih.gov/38381405/},
}

@article{pmid39259812,
  title = {Targeted partial reprogramming of age-associated cell states improves markers of health in mouse models of aging.},
  author = {Sahu SK, Reddy P, Lu J, Shao Y, Wang C, Tsuji M, Delicado EN, Rodriguez Esteban C, Belmonte JCI},
  journal = {Science translational medicine},
  year = {2024},
  pmid = {39259812},
  doi = {10.1126/scitranslmed.adg1777},
  url = {https://pubmed.ncbi.nlm.nih.gov/39259812/},
}

@article{pmid35437332,
  title = {Development of a clinical polygenic risk score assay and reporting workflow.},
  author = {["Hao L", "Kraft P", "Berriz G", "Hynes E", "Koch C", "Korategere V Kumar P", "Parpattedar S", "Steeves M", "Yu W", "Antwi A"]},
  journal = {Nature medicine},
  year = {2022},
  pmid = {35437332},
  doi = {10.1038/s41591-022-01767-6},
}

@article{pmid32747729,
  title = {Predicting ambient PM},
  author = {["Enebish T", "Chau K", "Jadamba B", "Franklin M"]},
  journal = {Journal of exposure science & environmental epidemiology},
  year = {2021},
  pmid = {32747729},
  doi = {10.1038/s41370-020-0257-8},
}

@article{pmid33268894,
  title = {Distinct hypothalamic control of same- and opposite-sex mounting behaviour in mice.},
  author = {["Karigo T", "Kennedy A", "Yang B", "Liu M", "Tai D", "Wahle I", "Anderson D"]},
  journal = {Nature},
  year = {2021},
  pmid = {33268894},
  doi = {10.1038/s41586-020-2995-0},
}

@article{pmid33398039,
  title = {Correction: MicroRNA signatures of TRAIL resistance in human non-small cell lung cancer},
  author = {Garofalo M; Quintavalle C; Di Leva G; Zanca C; Romano G; Taccioli C; Liu C G; Croce C M; Condorelli G},
  journal = {Oncogene},
  year = {2021},
  pmid = {33398039},
  doi = {10.1038/s41388-020-01608-1},
  url = {https://pubmed.ncbi.nlm.nih.gov/33398039/},
}

@article{pmid32327602,
  title = {Mechanisms of OCT4-SOX2 motif readout on nucleosomes.},
  author = {Michael AK, Grand RS, Isbel L, Cavadini S, Kozicka Z, Kempf G, Bunker RD, Schenk AD, Graff-Meyer A, Pathare GR, Weiss J, Matsumoto S, Burger L, Schübeler D, Thomä NH},
  journal = {Science (New York, N.Y.)},
  year = {2020},
  pmid = {32327602},
  doi = {10.1126/science.abb0074},
  url = {https://pubmed.ncbi.nlm.nih.gov/32327602/},
}

@article{pmid32664640,
  title = {The Use of Stem Cell Differentiation Stage Factors (SCDSFs) Taken from Zebrafish Embryos during Organogenesis and Their Role in Regulating the Gene Expression of Normal and Pathological (Stem) Cells.},
  author = {Biava PM},
  journal = {International journal of molecular sciences},
  year = {2020},
  pmid = {32664640},
  doi = {10.3390/ijms21144914},
  url = {https://pubmed.ncbi.nlm.nih.gov/32664640/},
}

@article{pmid31292550,
  title = {Tumour lineage shapes BRCA-mediated phenotypes.},
  author = {["Jonsson P", "Bandlamudi C", "Cheng M", "Srinivasan P", "Chavan S", "Friedman N", "Rosen E", "Richards A", "Bouvier N", "Selcuklu S"]},
  journal = {Nature},
  year = {2019},
  pmid = {31292550},
  doi = {10.1038/s41586-019-1382-1},
}

@article{pmid28111071,
  title = {Cooperative Binding of Transcription Factors Orchestrates Reprogramming.},
  author = {Chronis C, Fiziev P, Papp B, Butz S, Bonora G, Sabri S, Ernst J, Plath K},
  journal = {Cell},
  year = {2017},
  pmid = {28111071},
  doi = {10.1016/j.cell.2016.12.016},
  url = {https://pubmed.ncbi.nlm.nih.gov/28111071/},
}

@article{pmid28877458,
  title = {Ketogenic Diet Reduces Midlife Mortality and Improves Memory in Aging Mice.},
  author = {["Newman J", "Covarrubias A", "Zhao M", "Yu X", "Gut P", "Ng C", "Huang Y", "Haldar S", "Verdin E"]},
  journal = {Cell metabolism},
  year = {2017},
  pmid = {28877458},
  doi = {10.1016/j.cmet.2017.08.004},
}

@article{pmid27984723,
  title = {In Vivo Amelioration of Age-Associated Hallmarks by Partial Reprogramming.},
  author = {["Ocampo A", "Reddy P", "Martinez-Redondo P", "Platero-Luengo A", "Hatanaka F", "Hishida T", "Li M", "Lam D", "Kurita M", "Beyret E"]},
  journal = {Cell},
  year = {2016},
  pmid = {27984723},
  doi = {10.1016/j.cell.2016.11.052},
}

@article{pmid25297091,
  title = {Alzheimer's disease-like pathology induced by amyloid-β oligomers in nonhuman primates.},
  author = {["Forny-Germano L", "Lyra e Silva N", "Batista A", "Brito-Moreira J", "Gralle M", "Boehnke S", "Coe B", "Lablans A", "Marques S", "Martinez A"]},
  journal = {The Journal of neuroscience : the official journal of the Society for Neuroscience},
  year = {2014},
  pmid = {25297091},
  doi = {10.1523/JNEUROSCI.1353-14.2014},
}

@article{pmid23417675,
  title = {Structure and interactions of the human programmed cell death 1 receptor.},
  author = {["Cheng X", "Veverka V", "Radhakrishnan A", "Waters L", "Muskett F", "Morgan S", "Huo J", "Yu C", "Evans E", "Leslie A"]},
  journal = {The Journal of biological chemistry},
  year = {2013},
  pmid = {23417675},
  doi = {10.1074/jbc.M112.448126},
}

@article{pmid24055329,
  title = {Location and cellular stages of natural killer cell development.},
  author = {["Yu J", "Freud A", "Caligiuri M"]},
  journal = {Trends in immunology},
  year = {2013},
  pmid = {24055329},
  doi = {10.1016/j.it.2013.07.005},
}

@article{pmid22445517,
  title = {Direct reprogramming of fibroblasts into neural stem cells by defined factors.},
  author = {["Han D", "Tapia N", "Hermann A", "Hemmer K", "H\u00f6ing S", "Ara\u00fazo-Bravo M", "Zaehres H", "Wu G", "Frank S", "Moritz S"]},
  journal = {Cell stem cell},
  year = {2012},
  pmid = {22445517},
  doi = {10.1016/j.stem.2012.02.021},
}

@article{pmid22445518,
  title = {Direct conversion of fibroblasts into stably expandable neural stem cells.},
  author = {["Thier M", "W\u00f6rsd\u00f6rfer P", "Lakes Y", "Gorris R", "Herms S", "Opitz T", "Seiferling D", "Quandel T", "Hoffmann P", "N\u00f6then M"]},
  journal = {Cell stem cell},
  year = {2012},
  pmid = {22445518},
  doi = {10.1016/j.stem.2012.03.003},
}

@article{pmid22988881,
  title = {Cellular reprogramming: a new approach to modelling Parkinson's disease.},
  author = {Hartfield EM, Fernandes HJ, Vowles J, Cowley SA, Wade-Martins R},
  journal = {Biochemical Society transactions},
  year = {2012},
  pmid = {22988881},
  doi = {10.1042/BST20120159},
  url = {https://pubmed.ncbi.nlm.nih.gov/22988881/},
}

@article{pmid23260147,
  title = {A molecular roadmap of reprogramming somatic cells into iPS cells.},
  author = {["Polo J", "Anderssen E", "Walsh R", "Schwarz B", "Nefzger C", "Lim S", "Borkent M", "Apostolou E", "Alaei S", "Cloutier J"]},
  journal = {Cell},
  year = {2012},
  pmid = {23260147},
  doi = {10.1016/j.cell.2012.11.039},
}

@article{pmid21451524,
  title = {Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells.},
  author = {["Wu H", "D'Alessio A", "Ito S", "Xia K", "Wang Z", "Cui K", "Zhao K", "Sun Y", "Zhang Y"]},
  journal = {Nature},
  year = {2011},
  pmid = {21451524},
  doi = {10.1038/nature09934},
}

@article{pmid21885018,
  title = {Genome-wide maps of histone modifications unwind in vivo chromatin states of the hair follicle lineage.},
  author = {["Lien W", "Guo X", "Polak L", "Lawton L", "Young R", "Zheng D", "Fuchs E"]},
  journal = {Cell stem cell},
  year = {2011},
  pmid = {21885018},
  doi = {10.1016/j.stem.2011.07.015},
}

@article{pmid21149730,
  title = {Regulation of global genome nucleotide excision repair by SIRT1 through xeroderma pigmentosum C.},
  author = {["Ming M", "Shea C", "Guo X", "Li X", "Soltani K", "Han W", "He Y"]},
  journal = {Proceedings of the National Academy of Sciences of the United States of America},
  year = {2010},
  pmid = {21149730},
  doi = {10.1073/pnas.1010377108},
}

@article{pmid18035408,
  title = {Induction of pluripotent stem cells from adult human fibroblasts by defined factors.},
  author = {["Takahashi K", "Tanabe K", "Ohnuki M", "Narita M", "Ichisaka T", "Tomoda K", "Yamanaka S"]},
  journal = {Cell},
  year = {2007},
  pmid = {18035408},
  doi = {10.1016/j.cell.2007.11.019},
}