% Bibliography for hypothesis h-881362dc
% Title: KDM6A-Mediated H3K27me3 Rejuvenation
% Generated: 2026-04-28T14:07:11Z

@article{pmid40918525,
  title = {Epigenetic regulation of bladder cancer in the context of aging.},
  author = {["Liu X", "Ding G", "Liu Y", "Yan X", "Zhao Y", "Lv H", "Xu X"]},
  journal = {Frontiers in pharmacology},
  year = {2025},
  pmid = {40918525},
  doi = {10.3389/fphar.2025.1617452},
}

@article{pmid41040321,
  title = {Foxh1 is a locus-specific PRC2 recruiter governing germ layer silencing.},
  author = {["Cho J", "Hendrickson C", "Mar N", "Blitz I", "Fish M", "Wang W", "Cho K"]},
  journal = {bioRxiv : the preprint server for biology},
  year = {2025},
  pmid = {41040321},
  doi = {10.1101/2025.09.21.677640},
}

@article{pmid38355622,
  title = {Epigenetic regulation of CD38/CD48 by KDM6A mediates NK cell response in multiple myeloma.},
  author = {Liu J, Xing L, Li J, Wen K, Liu N, Liu Y, Wu G, Wang S, Ogiya D, Song TY, Kurata K, Penailillo J, Morelli E, Wang T, Hong X, Gulla A, Tai YT, Munshi N, Richardson P, Carrasco R, Hideshima T, Anderson KC},
  journal = {Nature communications},
  year = {2024},
  pmid = {38355622},
  doi = {10.1038/s41467-024-45561-z},
  url = {https://pubmed.ncbi.nlm.nih.gov/38355622/},
}

@article{pmid38926506,
  title = {Loss of Kmt2c or Kmt2d drives brain metastasis via KDM6A-dependent upregulation of MMP3.},
  author = {Seehawer M, Li Z, Nishida J, Foidart P, Reiter AH, Rojas-Jimenez E, Goyette MA, Yan P, Raval S, Munoz Gomez M, Cejas P, Long HW, Papanastasiou M, Polyak K},
  journal = {Nature cell biology},
  year = {2024},
  pmid = {38926506},
  doi = {10.1038/s41556-024-01446-3},
  url = {https://pubmed.ncbi.nlm.nih.gov/38926506/},
}

@article{pmid39232216,
  title = {Wnt-deficient and hypoxic environment orchestrates squamous reprogramming of human pancreatic ductal adenocarcinoma.},
  author = {Tamagawa H, Fujii M, Togasaki K, Seino T, Kawasaki S, Takano A, Toshimitsu K, Takahashi S, Ohta Y, Matano M, Kawasaki K, Machida Y, Sekine S, Machinaga A, Sasai K, Kodama Y, Kakiuchi N, Ogawa S, Hirano T, Seno H, Kitago M, Kitagawa Y, Iwasaki E, Kanai T, Sato T},
  journal = {Nature cell biology},
  year = {2024},
  pmid = {39232216},
  doi = {10.1038/s41556-024-01498-5},
  url = {https://pubmed.ncbi.nlm.nih.gov/39232216/},
}

@article{pmid37591951,
  title = {KDM6A epigenetically regulates subtype plasticity in small cell lung cancer.},
  author = {Duplaquet L, Li Y, Booker MA, Xie Y, Olsen SN, Patel RA, Hong D, Hatton C, Denize T, Walton E, Laimon YN, Li R, Jiang Y, Bronson RT, Southard J, Li S, Signoretti S, Qiu X, Cejas P, Armstrong SA, Long HW, Tolstorukov MY, Haffner MC, Oser MG},
  journal = {Nature cell biology},
  year = {2023},
  pmid = {37591951},
  doi = {10.1038/s41556-023-01210-z},
  url = {https://pubmed.ncbi.nlm.nih.gov/37591951/},
}

@article{pmid35396277,
  title = {H3K36 dimethylation shapes the epigenetic interaction landscape by directing repressive chromatin modifications in embryonic stem cells.},
  author = {["Chen H", "Hu B", "Horth C", "Bareke E", "Rosenbaum P", "Kwon S", "Sirois J", "Weinberg D", "Robison F", "Garcia B"]},
  journal = {Genome research},
  year = {2022},
  pmid = {35396277},
  doi = {10.1101/gr.276383.121},
}

@article{pmid33593974,
  title = {High-Resolution Differentiation of Enteric Bacteria in Premature Infant Fecal Microbiomes Using a Novel rRNA Amplicon.},
  author = {Graf J, Ledala N, Caimano MJ, Jackson E, Gratalo D, Fasulo D, Driscoll MD, Coleman S, Matson AP},
  journal = {mBio},
  year = {2021},
  pmid = {33593974},
  doi = {10.1128/mBio.03656-20},
  url = {https://pubmed.ncbi.nlm.nih.gov/33593974},
}

@article{pmid33627678,
  title = {Development of a deep learning-based software for calculating cleansing score in small bowel capsule endoscopy.},
  author = {Nam JH, Hwang Y, Oh DJ, Park J, Kim KB, Jung MK, Lim YJ},
  journal = {Sci Rep},
  year = {2021},
  pmid = {33627678},
  doi = {10.1038/s41598-021-81686-7},
  url = {https://pubmed.ncbi.nlm.nih.gov/33627678},
}

@article{pmid31748738,
  title = {Bacterial siderophores in community and host interactions.},
  author = {Kramer J, Özkaya Ö, Kümmerli R},
  journal = {Nat Rev Microbiol},
  year = {2020},
  pmid = {31748738},
  doi = {10.1038/s41579-019-0284-4},
  url = {https://pubmed.ncbi.nlm.nih.gov/31748738},
}

@article{pmid32814900,
  title = {An intramembrane chaperone complex facilitates membrane protein biogenesis.},
  author = {["Chitwood PJ", "Hegde RS"]},
  journal = {Nature},
  year = {2020},
  pmid = {32814900},
  doi = {10.1038/s41586-020-2624-y},
  url = {https://pubmed.ncbi.nlm.nih.gov/32814900/},
}

@article{pmid33398264,
  title = {SARS-CoV-2 infection induces long-lived bone marrow plasma cells in humans.},
  author = {Turner JS, Kim W, Kalaidina E, Goss CW, Rauseo AM, Schmitz AJ, Hansen L, Haile A, Klebert MK, Pusic I},
  journal = {Res Sq},
  year = {2020},
  pmid = {33398264},
  doi = {10.21203/rs.3.rs-132821/v1},
  url = {https://pubmed.ncbi.nlm.nih.gov/33398264},
}

@article{pmid30683808,
  title = {ApoE-associated modulation of neuroprotection from Aβ-mediated neurodegeneration in transgenic Caenorhabditis elegans.},
  author = {Griffin EF, Scopel SE, Stephen CA, Holzhauer AC, Vaji MA, Tuckey RA, Berkowitz LA, Caldwell KA, Caldwell GA},
  journal = {Dis Model Mech},
  year = {2019},
  pmid = {30683808},
  doi = {10.1242/dmm.037218},
  url = {https://pubmed.ncbi.nlm.nih.gov/30683808},
}

@article{pmid31167141,
  title = {Endodermal Maternal Transcription Factors Establish Super-Enhancers during Zygotic Genome Activation.},
  author = {Paraiso KD, Blitz IL, Coley M, Cheung J, Sudou N, Taira M, Cho KWY},
  journal = {Cell Rep},
  year = {2019},
  pmid = {31167141},
  doi = {10.1016/j.celrep.2019.05.013},
  url = {https://pubmed.ncbi.nlm.nih.gov/31167141},
}

@article{pmid31409811,
  title = {Benefit of Adjuvant Chemoradiotherapy in Resected Gallbladder Carcinoma.},
  author = {["Kim T", "Woo S", "Lee W", "Oh E", "Youn S", "Moon S", "Kim S", "Han S", "Park S", "Kim D"]},
  journal = {Scientific reports},
  year = {2019},
  pmid = {31409811},
  doi = {10.1038/s41598-019-48099-z},
}

@article{pmid31434919,
  title = {In vitro anti-HIV-1 activity of the bioactive compound extracted and purified from two different marine macroalgae (seaweeds) (Dictyota bartayesiana J.V.Lamouroux and Turbinaria decurrens Bory).},
  author = {["Sanniyasi E", "Venkatasubramanian G", "Anbalagan M", "Raj P", "Gopal R"]},
  journal = {Scientific reports},
  year = {2019},
  pmid = {31434919},
  doi = {10.1038/s41598-019-47917-8},
}

@article{pmid31747604,
  title = {Targeting Excessive EZH1 and EZH2 Activities for Abnormal Histone Methylation and Transcription Network in Malignant Lymphomas.},
  author = {Yamagishi M, Hori M, Fujikawa D, Ohsugi T, Honma D, Adachi N, Katano H, Hishima T, Kobayashi S, Nakano K, Nakashima M, Iwanaga M, Utsunomiya A, Tanaka Y, Okada S, Tsukasaki K, Tobinai K, Araki K, Watanabe T, Uchimaru K},
  journal = {Cell reports},
  year = {2019},
  pmid = {31747604},
  doi = {10.1016/j.celrep.2019.10.083},
  url = {https://pubmed.ncbi.nlm.nih.gov/31747604/},
}

@article{pmid29618526,
  title = {Opportunities and obstacles for deep learning in biology and medicine.},
  author = {["Ching T", "Himmelstein D", "Beaulieu-Jones B", "Kalinin A", "Do B", "Way G", "Ferrero E", "Agapow P", "Zietz M", "Hoffman M"]},
  journal = {Journal of the Royal Society, Interface},
  year = {2018},
  pmid = {29618526},
  doi = {10.1098/rsif.2017.0387},
}

@article{pmid30449621,
  title = {Acetylation of Cytidine in mRNA Promotes Translation Efficiency.},
  author = {["Arango D", "Sturgill D", "Alhusaini N", "Dillman A", "Sweet T", "Hanson G", "Hosogane M", "Sinclair W", "Nanan K", "Mandler M"]},
  journal = {Cell},
  year = {2018},
  pmid = {30449621},
  doi = {10.1016/j.cell.2018.10.030},
}

@article{pmid28886680,
  title = {Outer Membrane Biogenesis.},
  author = {["Konovalova A", "Kahne D", "Silhavy T"]},
  journal = {Annual review of microbiology},
  year = {2017},
  pmid = {28886680},
  doi = {10.1146/annurev-micro-090816-093754},
}

@article{pmid27796307,
  title = {KAT2A/KAT2B-targeted acetylome reveals a role for PLK4 acetylation in preventing centrosome amplification.},
  author = {["Fournier M", "Orpinell M", "Grauffel C", "Scheer E", "Garnier J", "Ye T", "Chavant V", "Joint M", "Esashi F", "Dejaegere A"]},
  journal = {Nature communications},
  year = {2016},
  pmid = {27796307},
  doi = {10.1038/ncomms13227},
}

@article{pmid25533482,
  title = {NFκB-activated astroglial release of complement C3 compromises neuronal morphology and function associated with Alzheimer's disease.},
  author = {["Lian H", "Yang L", "Cole A", "Sun L", "Chiang AC", "Fowler SW", "Shim DJ", "Rodriguez-Rivera J", "Taglialatela G", "Jankowsky JL", "Lu HC", "Zheng H"]},
  journal = {Neuron},
  year = {2015},
  pmid = {25533482},
  doi = {10.1016/j.neuron.2014.11.018},
  url = {https://pubmed.ncbi.nlm.nih.gov/25533482/},
}

@article{pmid25219498,
  title = {Modification of ASC1 by UFM1 is crucial for ERα transactivation and breast cancer development.},
  author = {Yoo HM, Kang SH, Kim JY, Lee JE, Seong MW, Lee SW, Ka SH, Sou YS, Komatsu M, Tanaka K},
  journal = {Mol Cell},
  year = {2014},
  pmid = {25219498},
  doi = {10.1016/j.molcel.2014.08.007},
  url = {https://pubmed.ncbi.nlm.nih.gov/25219498},
}

@article{pmid23912945,
  title = {Top3β is an RNA topoisomerase that works with fragile X syndrome protein to promote synapse formation.},
  author = {["Xu D", "Shen W", "Guo R", "Xue Y", "Peng W", "Sima J", "Yang J", "Sharov A", "Srikantan S", "Yang J"]},
  journal = {Nature neuroscience},
  year = {2013},
  pmid = {23912945},
  doi = {10.1038/nn.3479},
}

@article{pmid22729224,
  title = {De novo germline and postzygotic mutations in AKT3, PIK3R2 and PIK3CA cause a spectrum of related megalencephaly syndromes},
  author = {["Rivi\u00e8re J", "Mirzaa G", "O'Roak B", "Beddaoui M", "Alcantara D", "Conway R", "St-Onge J", "Schwartzentruber J", "Gripp K", "Nikkel S"]},
  journal = {Nature Genetics},
  year = {2012},
  pmid = {22729224},
  doi = {10.1038/ng.2331},
}