% Bibliography for hypothesis h-7f0f1ffd
% Title: Autophagy-Epigenetic Feedback Loop Creates a Compounding Biomarker Signal — Autophagy Flux Methylation as an AD Stage Chronometer
% Generated: 2026-04-28T17:01:51Z

@article{pmid39406236,
  title = {Autophagy, aging, and age-related neurodegeneration.},
  author = {Palmer JE, Wilson N, Son SM, Obrocki P, Wrobel L, Rob M, Takla M, Korolchuk VI, Rubinsztein DC},
  journal = {Neuron},
  year = {2025},
  pmid = {39406236},
  doi = {10.1016/j.neuron.2024.09.015},
  url = {https://pubmed.ncbi.nlm.nih.gov/39406236/},
}

@article{pmid39406236,
  title = {Autophagy, aging, and age-related neurodegeneration.},
  author = {Palmer JE, Wilson N, Son SM},
  journal = {Neuron},
  year = {2025},
  pmid = {39406236},
}

@article{pmid40277323,
  title = {SMAD3 and PINK1 constitute a new positive feedback loop in regulation of mitophagy.},
  author = {Tang M, Lu G, Shen HM},
  journal = {Autophagy},
  year = {2025},
  pmid = {40277323},
}

@article{pmid39259382,
  title = {Autophagy-lysosomal-associated neuronal death in neurodegenerative disease.},
  author = {Nixon RA},
  journal = {Acta neuropathologica},
  year = {2024},
  pmid = {39259382},
  doi = {10.1007/s00401-024-02799-7},
  url = {https://pubmed.ncbi.nlm.nih.gov/39259382/},
}

@article{pmid39259382,
  title = {Autophagy-lysosomal-associated neuronal death in neurodegenerative disease.},
  author = {Nixon Ralph A},
  journal = {Acta neuropathologica},
  year = {2024},
  pmid = {39259382},
  doi = {10.1007/s00401-024-02799-7},
}

@article{pmid37127681,
  title = {ROS-induced lipid peroxidation modulates cell death outcome: mechanisms behind apoptosis, autophagy, and ferroptosis.},
  journal = {Archives of toxicology},
  year = {2023},
  pmid = {37127681},
  doi = {10.1007/s00204-023-03476-6},
}

@article{pmid37127681,
  title = {ROS-induced lipid peroxidation modulates cell death outcome: mechanisms behind apoptosis, autophagy, and ferroptosis.},
  author = {Wang, Wang, Zhang, Hu, Jiang et al.},
  journal = {Archives of toxicology},
  year = {2023},
  pmid = {37127681},
}

@article{pmid37148553,
  title = {Adaptive Deep Brain Stimulation: From Experimental Evidence Toward Practical Implementation.},
  author = {Neumann WJ, Gilron R, Little S},
  journal = {Mov Disord},
  year = {2023},
  pmid = {37148553},
}

@article{pmid33442914,
  title = {The interplay of ROS and the PI3K/Akt pathway in autophagy regulation.},
  journal = {Biotechnology and applied biochemistry},
  year = {2022},
  pmid = {33442914},
  doi = {10.1002/bab.2104},
}

@article{pmid33442914,
  title = {The interplay of ROS and the PI3K/Akt pathway in autophagy regulation.},
  author = {Kma, Baruah},
  journal = {Biotechnology and applied biochemistry},
  year = {2022},
  pmid = {33442914},
}

@article{pmid34161185,
  title = {Autophagy in ovary and polycystic ovary syndrome: role, dispute and future perspective.},
  journal = {Autophagy},
  year = {2022},
  pmid = {34161185},
  doi = {10.1080/15548627.2021.1938914},
}

@article{pmid34161185,
  title = {Autophagy in ovary and polycystic ovary syndrome: role, dispute and future perspective.},
  author = {Kumariya, Ubba, Jha, Gayen},
  journal = {Autophagy},
  year = {2022},
  pmid = {34161185},
}

@article{pmid33682185,
  title = {Cancer-Associated Fibroblast-Mediated Cellular Crosstalk Supports Hepatocellular Carcinoma Progression.},
  author = {Song M, He J, Pan QZ},
  journal = {Hepatology},
  year = {2021},
  pmid = {33682185},
}

@article{pmid31931659,
  title = {Autophagy drives fibroblast senescence through MTORC2 regulation.},
  author = {Bernard M, Yang B, Migneault F},
  journal = {Autophagy},
  year = {2020},
  pmid = {31931659},
}

@article{pmid25722131,
  title = {ROS and Autophagy: Interactions and Molecular Regulatory Mechanisms.},
  author = {Li L, Tan J, Miao Y, Lei P, Zhang Q},
  journal = {Cellular and molecular neurobiology},
  year = {2015},
  pmid = {25722131},
  doi = {10.1007/s10571-015-0166-x},
  url = {https://pubmed.ncbi.nlm.nih.gov/25722131/},
}

@article{pmid25722131,
  title = {ROS and Autophagy: Interactions and Molecular Regulatory Mechanisms.},
  author = {Li L, Tan J, Miao Y, Lei P, Zhang Q},
  journal = {Cellular and molecular neurobiology},
  year = {2015},
  pmid = {25722131},
}