% Bibliography for hypothesis h-63b7bacd
% Title: Context-Dependent CRISPR Activation in Specific Neuronal Subtypes
% Generated: 2026-04-28T13:52:39Z

@article{pmid39929729,
  title = {Exploring Parkinson's through the Lens of Genomics and Bioinformatics.},
  author = {Menon V},
  journal = {Cold Spring Harb Perspect Med},
  year = {2026},
  pmid = {39929729},
  doi = {pii: a041621. doi: 10.1101/cshperspect.a041621},
  url = {https://pubmed.ncbi.nlm.nih.gov/39929729/},
}

@article{pmid40618260,
  title = {Neuromodulatory role and therapeutic potential of N 6 -methyladenosine RNA methylation in neurodegenerative diseases.},
  author = {Zhang J, Ma W, Liu R, Li X, Yuan Z, Cheng J},
  journal = {Neural regeneration research},
  year = {2026},
  pmid = {40618260},
  doi = {10.4103/NRR.NRR-D-24-01648},
  url = {https://pubmed.ncbi.nlm.nih.gov/40618260/},
}

@article{pmid41576950,
  title = {Cell-type resolved protein atlas of brain lysosomes identifies SLC45A1-associated disease as a lysosomal disorder.},
  author = {["Ghoochani A", "Heiby J", "Rawat E", "Medoh U", "Di Fraia D", "Dong W", "Gastou M", "Rastogi M", "Hernandez V", "Nyame K"]},
  journal = {Cell},
  year = {2026},
  pmid = {41576950},
  doi = {10.1016/j.cell.2025.12.012},
}

@article{pmid41676679,
  title = {Single-Cell Atlas of Transcription and Chromatin States Reveals Regulatory Programs in the Human Brain.},
  author = {Xie Y, Chang L, Zhong G, Rink JA, Báez-Becerra T, Armand E, Ding W, Li K, Bonne E, Lie A, Indralingam HS, Dong K, Loe T, Huang B, Wang Z, Barcoma AS, Willier JK, Knutson KW, Liu J, Cho S, Cao S, Russo KG, Young CK, Arzavala J, Sanchez Y, Bikkina A, Schenker-Ahmed N, Kern C, Zhao Z, Klein A},
  journal = {bioRxiv : the preprint server for biology},
  year = {2026},
  pmid = {41676679},
  doi = {10.64898/2026.02.02.703166},
  url = {https://pubmed.ncbi.nlm.nih.gov/41676679/},
}

@article{pmid41707523,
  title = {Decoding Alzheimer's genetic risk through intercellular communication in the human brain: Lessons from Clusterin.},
  author = {Lish AM, Young-Pearse TL},
  journal = {Current opinion in neurobiology},
  year = {2026},
  pmid = {41707523},
  doi = {10.1016/j.conb.2026.103165},
  url = {https://pubmed.ncbi.nlm.nih.gov/41707523/},
}

@article{pmid41805030,
  title = {A Simple Method for RNA-Seq of Manually Isolated Chromatophores in Oryzias Fishes.},
  author = {Goda M, Miyagi A, Sugiwaka K, Watanabe M, Bessho-Uehara M et al.},
  journal = {Dev Growth Differ},
  year = {2026},
  pmid = {41805030},
  doi = {doi: 10.1111/dgd.70044},
  url = {https://pubmed.ncbi.nlm.nih.gov/41805030/},
}

@article{pmid39893321,
  title = {Focused ultrasound widely broadens AAV-delivered Cas9 distribution and activity.},
  author = {Gumusgoz E, Kasiri S, Youssef I, Verma M, Chopra R, Villarreal Acha D, Wu J, Marriam U, Alao E, Chen X, Guisso DR, Gray SJ, Shah BR, Minassian BA},
  journal = {Gene therapy},
  year = {2025},
  pmid = {39893321},
  doi = {10.1038/s41434-025-00517-w},
  url = {https://pubmed.ncbi.nlm.nih.gov/39893321/},
}

@article{pmid41151583,
  title = {Metabolic rewiring prevents neurodegeneration caused by chronic mitochondrial dysfunction.},
  author = {Richhariya S, Shin D, Schlichting M, Rosbash M},
  journal = {Current biology : CB},
  year = {2025},
  pmid = {41151583},
  doi = {10.1016/j.cub.2025.09.063},
  url = {https://pubmed.ncbi.nlm.nih.gov/41151583/},
}

@article{pmid39464040,
  title = {Cell-Type Resolved Protein Atlas of Brain Lysosomes Identifies SLC45A1-Associated Disease as a Lysosomal Disorder.},
  author = {["Ghoochani A", "Heiby J", "Rawat E", "Medoh U", "Di Fraia D", "Dong W", "Gastou M", "Nyame K", "Laqtom N", "Gomez-Ospina N"]},
  journal = {bioRxiv : the preprint server for biology},
  year = {2024},
  pmid = {39464040},
  doi = {10.1101/2024.10.14.618295},
}

@article{pmid38111016,
  title = {Amyloid-β specific regulatory T cells attenuate Alzheimer's disease pathobiology in APP/PS1 mice.},
  author = {Yeapuri P, Machhi J, Lu Y, Abdelmoaty MM, Kadry R, Patel M, Bhattarai S, Lu E, Namminga KL, Olson KE, Foster EG, Mosley RL, Gendelman HE},
  journal = {Molecular neurodegeneration},
  year = {2023},
  pmid = {38111016},
  doi = {10.1186/s13024-023-00692-7},
  url = {https://pubmed.ncbi.nlm.nih.gov/38111016/},
}

@article{pmid34057020,
  title = {Autophagy and ALS: mechanistic insights and therapeutic implications.},
  author = {Chua JP, De Calbiac H, Kabashi E, Barmada SJ},
  journal = {Autophagy},
  year = {2022},
  pmid = {34057020},
  doi = {10.1080/15548627.2021.1926656},
  url = {https://pubmed.ncbi.nlm.nih.gov/34057020},
}

@article{pmid35173339,
  title = {Magnetic control of tokamak plasmas through deep reinforcement learning.},
  author = {Degrave J, Felici F, Buchli J, Neunert M, Tracey B, Carpanese F, Ewalds T, Hafner R, Abdolmaleki A, de Las Casas D, Donner C, Fritz L, Galperti C, Huber A, Keeling J, Tsimpoukelli M, Kay J, Merle A, Moret JM, Noury S, Pesamosca F, Pfau D, Sauter O, Sommariva C, Coda S, Duval B, Fasoli A, Kohli P, Kavukcuoglu K, Hassabis D},
  journal = {Nature},
  year = {2022},
  pmid = {35173339},
  doi = {10.1038/s41586-021-04301-9},
  url = {https://pubmed.ncbi.nlm.nih.gov/35173339/},
}

@article{pmid35526014,
  title = {BIN1 is a key regulator of proinflammatory and neurodegeneration-related activation in microglia.},
  author = {Sudwarts A, Ramesha S, Gao T},
  journal = {Mol Neurodegener},
  year = {2022},
  pmid = {35526014},
  doi = {10.1186/s13024-022-00535-x},
  url = {https://pubmed.ncbi.nlm.nih.gov/35526014/},
}

@article{pmid33199879,
  title = {Cardiomyocyte-derived calcitonin regulates atrial fibrosis and AF.},
  author = {Fernández-Ruiz I},
  journal = {Nature reviews. Cardiology},
  year = {2021},
  pmid = {33199879},
  doi = {10.1038/s41569-020-00479-z},
  url = {https://pubmed.ncbi.nlm.nih.gov/33199879/},
}

@article{pmid34469734,
  title = {SMS2 deficiency impairs PKCδ-regulated B cell tolerance in the germinal center.},
  author = {Ou P, Stanek A, Huan Z, Roman CAJ, Huan C},
  journal = {Cell reports},
  year = {2021},
  pmid = {34469734},
  doi = {10.1016/j.celrep.2021.109624},
  url = {https://pubmed.ncbi.nlm.nih.gov/34469734/},
}

@article{pmid31636395,
  title = {Functional characterization of 84 PALB2 variants of uncertain significance.},
  author = {Wiltshire T, Ducy M, Foo TK, Hu C, Lee KY, Belur Nagaraj A, Rodrigue A, Gomes TT, Simard J, Monteiro ANA, Xia B, Carvalho MA, Masson JY, Couch FJ},
  journal = {Genetics in medicine : official journal of the American College of Medical Genetics},
  year = {2020},
  pmid = {31636395},
  doi = {10.1038/s41436-019-0682-z},
  url = {https://pubmed.ncbi.nlm.nih.gov/31636395/},
}

@article{pmid33046621,
  title = {Safety and efficacy of AMG 820, an anti-colony-stimulating factor 1 receptor antibody, in combination with pembrolizumab in adults with advanced solid tumors.},
  author = {Razak AR, Cleary JM, Moreno V, Boyer M, Calvo Aller E, Edenfield W, Tie J, Harvey RD, Rutten A, Shah MA, Olszanski AJ, Jäger D, Lakhani N, Ryan DP, Rasmussen E, Juan G, Wong H, Soman N, Smit MD, Nagorsen D, Papadopoulos KP},
  journal = {Journal for immunotherapy of cancer},
  year = {2020},
  pmid = {33046621},
  doi = {10.1136/jitc-2020-001006},
  url = {https://pubmed.ncbi.nlm.nih.gov/33046621/},
}

@article{pmid30778238,
  title = {Long-term evaluation of AAV-CRISPR genome editing for Duchenne muscular dystrophy.},
  author = {Nelson CE, Wu Y, Gemberling MP, Oliver ML, Waller MA, Bohning JD, Robinson-Hamm JN, Bulaklak K, Castellanos Rivera RM, Collier JH, Asokan A, Gersbach CA},
  journal = {Nature medicine},
  year = {2019},
  pmid = {30778238},
  doi = {10.1038/s41591-019-0344-3},
  url = {https://pubmed.ncbi.nlm.nih.gov/30778238/},
}

@article{pmid28523558,
  title = {Epigenome Editing in the Brain.},
  author = {Bashtrykov P, Jeltsch A},
  journal = {Advances in experimental medicine and biology},
  year = {2017},
  pmid = {28523558},
  doi = {10.1007/978-3-319-53889-1_21},
  url = {https://pubmed.ncbi.nlm.nih.gov/28523558/},
}

@article{pmid29078412,
  title = {Rising hazard of storm-surge flooding.},
  author = {Stefan Rahmstorf},
  journal = {Proceedings of the National Academy of Sciences of the United States of America},
  year = {2017},
  pmid = {29078412},
  doi = {10.1073/pnas.1715895114},
  url = {https://pubmed.ncbi.nlm.nih.gov/29078412/},
}

@article{pmid29083409,
  title = {Computational correction of copy number effect improves specificity of CRISPR-Cas9 essentiality screens in cancer cells.},
  author = {Meyers RM, Bryan JG, McFarland JM, Weir BA, Sizemore AE, Xu H, Dharia NV, Montgomery PG, Cowley GS, Pantel S, Goodale A, Lee Y, Ali LD, Jiang G, Lubonja R, Harrington WF, Strickland M, Wu T, Hawes DC, Zhivich VA, Wyatt MR, Kalani Z, Chang JJ, Okamoto M, Stegmaier K, Golub TR, Boehm JS, Vazquez F, Root DE, Hahn WC},
  journal = {Nature genetics},
  year = {2017},
  pmid = {29083409},
  doi = {10.1038/ng.3984},
  url = {https://pubmed.ncbi.nlm.nih.gov/29083409/},
}

@article{pmid24107444,
  title = {Function and dysfunction of presenilin.},
  author = {Shen J},
  journal = {Neuro-degenerative diseases},
  year = {2014},
  pmid = {24107444},
  doi = {10.1159/000354971},
  url = {https://pubmed.ncbi.nlm.nih.gov/24107444/},
}