% Bibliography for hypothesis h-637a53c9
% Title: Chaperone-Mediated APOE4 Refolding Enhancement
% Generated: 2026-04-28T21:01:35Z

@article{pmid39936620,
  title = {Heat-shock chaperone HSPB1 mitigates poly-glycine-induced neurodegeneration via restoration of autophagic flux.},
  author = {Ding N, Song Y, Zhang Y, Yu W, Li X, Li W, Li L},
  journal = {Autophagy},
  year = {2025},
  pmid = {39936620},
  doi = {10.1080/15548627.2025.2466144},
  url = {https://pubmed.ncbi.nlm.nih.gov/39936620/},
}

@article{pmid39936620,
  title = {Heat-shock chaperone HSPB1 mitigates poly-glycine-induced neurodegeneration via restoration of autophagic flux.},
  author = {Ding N, Song Y, Zhang Y, Yu W, Li X et al.},
  journal = {Autophagy},
  year = {2025},
  pmid = {39936620},
  doi = {doi: 10.1080/15548627.2025.2466144},
  url = {https://pubmed.ncbi.nlm.nih.gov/39936620/},
}

@article{pmid40319428,
  title = {Chaperone-mediated autophagy, heat shock protein 70, and serotonin: novel targets of beta-hydroxybutyrate in HFFD/LPS-induced sporadic Alzheimer's disease model.},
  author = {["Mohamed R", "Abdallah D", "El-Abhar H"]},
  journal = {Inflammopharmacology},
  year = {2025},
  pmid = {40319428},
  doi = {10.1007/s10787-025-01754-6},
}

@article{pmid40661327,
  title = {Downregulation of NEAT1 due to loss of TDP-43 function exacerbates motor neuron degeneration in amyotrophic lateral sclerosis.},
  author = {Kawakami Y, Iguchi Y, Li J},
  journal = {Brain Commun},
  year = {2025},
  pmid = {40661327},
  doi = {10.1093/braincomms/fcaf261},
  url = {https://pubmed.ncbi.nlm.nih.gov/40661327/},
}

@article{pmid40715263,
  title = {Single nucleus RNA sequencing profile analysis to reveal cell type specific common molecular drivers of Parkinson's disease and therapeutic agents.},
  author = {Pappu MAA, Alamin M, Sultana MH},
  journal = {Sci Rep},
  year = {2025},
  pmid = {40715263},
  doi = {10.1038/s41598-025-09417-w},
  url = {https://pubmed.ncbi.nlm.nih.gov/40715263/},
}

@article{pmid38308871,
  title = {Integrating network pharmacology and drug side-effect data to explore mechanism of liver injury-induced by tyrosine kinase inhibitors.},
  author = {["Tang M", "Wu Z", "Li F"]},
  journal = {Computers in biology and medicine},
  year = {2024},
  pmid = {38308871},
  doi = {10.1016/j.compbiomed.2024.108040},
}

@article{pmid39080645,
  title = {Magnetothermal-activated gene editing strategy for enhanced tumor cell apoptosis.},
  author = {["Li M", "Li S", "Guo Y", "Hu P", "Shi J"]},
  journal = {Journal of nanobiotechnology},
  year = {2024},
  pmid = {39080645},
  doi = {10.1186/s12951-024-02734-8},
}

@article{pmid34151764,
  title = {Understanding the Role of Histone Deacetylase and their Inhibitors in Neurodegenerative Disorders: Current Targets and Future Perspective.},
  author = {Kumar V, Kundu S, Singh A, Singh S},
  journal = {Current neuropharmacology},
  year = {2022},
  pmid = {34151764},
  doi = {10.2174/1570159X19666210609160017},
  url = {https://pubmed.ncbi.nlm.nih.gov/34151764/},
}

@article{pmid34151764,
  title = {Understanding the Role of Histone Deacetylase and their Inhibitors in Neurodegenerative Disorders: Current Targets and Future Perspective.},
  author = {Kumar V, Kundu S, Singh A, Singh S},
  journal = {Curr Neuropharmacol},
  year = {2022},
  pmid = {34151764},
  doi = {doi: 10.2174/1570159X19666210609160017},
  url = {https://pubmed.ncbi.nlm.nih.gov/34151764/},
}

@article{pmid34440849,
  title = {YAP-Dependent BiP Induction Is Involved in Nicotine-Mediated Oral Cancer Malignancy.},
  author = {["Chien C", "Chen Y", "Hsu C", "Chou Y", "Shiah S", "Liu S", "Hsieh A", "Yen C", "Lee C", "Shieh Y"]},
  journal = {Cells},
  year = {2021},
  pmid = {34440849},
  doi = {10.3390/cells10082080},
}

@article{pmid34961819,
  title = {Transcriptome Analysis of Rat Lungs Exposed to Moxa Smoke after Acute Toxicity Testing.},
  author = {["Xu X", "Deng W", "Zhang W", "Zhang J", "Wang M", "Shan S", "Liu H"]},
  journal = {Evidence-based complementary and alternative medicine : eCAM},
  year = {2021},
  pmid = {34961819},
  doi = {10.1155/2021/5107441},
}

@article{pmid32289328,
  title = {Astrocyte-derived extracellular vesicles: Neuroreparative properties and role in the pathogenesis of neurodegenerative disorders.},
  author = {["Upadhya R", "Zingg W", "Shetty S", "Shetty A"]},
  journal = {Journal of controlled release : official journal of the Controlled Release Society},
  year = {2020},
  pmid = {32289328},
  doi = {10.1016/j.jconrel.2020.04.017},
}

@article{pmid32712350,
  title = {HSPA8 knock-down induces the accumulation of neurodegenerative disorder-associated proteins.},
  author = {["Sirtori R", "Riva C", "Ferrarese C", "Sala G"]},
  journal = {Neuroscience letters},
  year = {2020},
  pmid = {32712350},
  doi = {10.1016/j.neulet.2020.135272},
}

@article{pmid30883359,
  title = {Neuronal Apolipoprotein E4 Expression Results in Proteome-Wide Alterations and Compromises Bioenergetic Capacity by Disrupting Mitochondrial Function.},
  author = {["Orr A", "Kim C", "Jimenez-Morales D", "Newton B", "Johnson J", "Krogan N", "Swaney D", "Mahley R"]},
  journal = {Journal of Alzheimer's disease : JAD},
  year = {2019},
  pmid = {30883359},
  doi = {10.3233/JAD-181184},
}

@article{pmid30004119,
  title = {Clinical efficiency and safety of Hsp90 inhibitor Novobiocin in avian tibial dyschondroplasia.},
  author = {["Nabi F", "Iqbal M", "Zhang H", "Rehman M", "Shahzad M", "Huang S", "Han Z", "Mehmood K", "Ahmed N", "Chachar B"]},
  journal = {Journal of veterinary pharmacology and therapeutics},
  year = {2018},
  pmid = {30004119},
  doi = {10.1111/jvp.12692},
}

@article{pmid30075149,
  title = {Chaperone-Mediated Autophagy Promotes Beclin1 Degradation in Persistently Infected Hepatitis C Virus Cell Culture.},
  author = {["Aydin Y", "Stephens C", "Chava S", "Heidari Z", "Panigrahi R", "Williams D", "Wiltz K", "Bell A", "Wilson W", "Reiss K"]},
  journal = {The American journal of pathology},
  year = {2018},
  pmid = {30075149},
  doi = {10.1016/j.ajpath.2018.06.022},
}

@article{pmid30211813,
  title = {Results from phase II trial of HSP90 inhibitor, STA-9090 (ganetespib), in metastatic uveal melanoma.},
  author = {["Shah S", "Luke J", "Jacene H", "Chen T", "Giobbie-Hurder A", "Ibrahim N", "Buchbinder E", "McDermott D", "Flaherty K", "Sullivan R"]},
  journal = {Melanoma research},
  year = {2018},
  pmid = {30211813},
  doi = {10.1097/CMR.0000000000000509},
}

@article{pmid28255900,
  title = {Re-examining HSPC1 inhibitors.},
  author = {Lee SL, Dempsey-Hibbert NC, Vimalachandran D, Wardle TD, Sutton PA, Williams JH},
  journal = {Cell stress & chaperones},
  year = {2017},
  pmid = {28255900},
  doi = {10.1007/s12192-017-0774-0},
  url = {https://pubmed.ncbi.nlm.nih.gov/28255900/},
}

@article{pmid27097127,
  title = {Pharmacological Chaperones: Design and Development of New Therapeutic Strategies for the Treatment of Conformational Diseases.},
  author = {["Convertino M", "Das J", "Dokholyan N"]},
  journal = {ACS chemical biology},
  year = {2016},
  pmid = {27097127},
  doi = {10.1021/acschembio.6b00195},
}

@article{pmid21483481,
  title = {Exploring off-targets and off-systems for adverse drug reactions via chemical-protein interactome--clozapine-induced agranulocytosis as a case study.},
  author = {["Yang L", "Wang K", "Chen J", "Jegga A", "Luo H", "Shi L", "Wan C", "Guo X", "Qin S", "He G"]},
  journal = {PLoS computational biology},
  year = {2011},
  pmid = {21483481},
  doi = {10.1371/journal.pcbi.1002016},
}

@article{pmid16903824,
  title = {Role of ApoE in conformation-prone diseases and atherosclerosis.},
  author = {["Dergunov A"]},
  journal = {Biochemistry. Biokhimiia},
  year = {2006},
  pmid = {16903824},
  doi = {10.1134/s0006297906070029},
}